Wall clock time and date at job start Tue Mar 31 2020 07:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00194 * 2 1 4 4 O 1.20823 * 119.99771 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99832 * 179.97438 * 3 2 1 6 6 C 1.52999 * 110.29134 * 299.32623 * 5 3 2 7 7 C 1.54374 * 110.32474 * 61.45792 * 5 3 2 8 8 N 1.48561 * 104.59956 * 95.14176 * 7 5 3 9 9 C 1.46891 * 111.00281 * 159.03857 * 8 7 5 10 10 C 1.53002 * 109.47278 * 169.99985 * 9 8 7 11 11 H 1.09000 * 109.46986 * 55.00108 * 10 9 8 12 12 C 1.47206 * 109.47021 * 295.00292 * 10 9 8 13 13 N 6.25410 * 104.02074 * 293.82890 * 2 1 3 14 14 C 1.52997 * 109.47415 * 175.00226 * 10 9 8 15 15 C 1.50702 * 109.47345 * 185.00243 * 14 10 9 16 16 H 1.08004 * 119.99515 * 359.97438 * 15 14 10 17 17 C 1.37877 * 119.99986 * 179.97438 * 15 14 10 18 18 N 1.31518 * 120.00031 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99746 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47233 * 90.00115 * 19 17 15 21 21 H 1.48500 * 109.46846 * 210.00038 * 19 17 15 22 22 H 1.48505 * 109.47120 * 329.99702 * 19 17 15 23 23 C 1.48559 * 104.21841 * 39.48367 * 8 7 5 24 24 C 1.54261 * 110.40897 * 177.14248 * 5 3 2 25 25 H 1.09003 * 110.32017 * 359.95622 * 24 5 3 26 26 C 1.52995 * 110.32566 * 122.16169 * 24 5 3 27 27 H 1.08997 * 109.46955 * 59.99698 * 1 2 3 28 28 H 1.09000 * 109.47186 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47218 * 299.99803 * 1 2 3 30 30 H 1.08996 * 109.47461 * 180.67229 * 6 5 3 31 31 H 1.09003 * 109.47275 * 300.67808 * 6 5 3 32 32 H 1.09007 * 109.47027 * 60.67306 * 6 5 3 33 33 H 1.09003 * 110.41014 * 336.36349 * 7 5 3 34 34 H 1.09002 * 110.41145 * 213.92546 * 7 5 3 35 35 H 1.09006 * 109.47007 * 50.00659 * 9 8 7 36 36 H 1.09000 * 109.47328 * 290.00129 * 9 8 7 37 37 H 1.09001 * 109.46992 * 305.00579 * 14 10 9 38 38 H 1.08998 * 109.47097 * 64.99767 * 14 10 9 39 39 H 0.96993 * 119.99693 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.41417 * 79.29647 * 23 8 7 41 41 H 1.09002 * 110.40967 * 201.74141 * 23 8 7 42 42 H 1.08999 * 109.46985 * 60.00042 * 26 24 5 43 43 H 1.09001 * 109.47371 * 179.97438 * 26 24 5 44 44 H 1.09004 * 109.47603 * 300.00302 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1325 0.6008 1.2521 7 6 4.1385 0.6118 -1.2707 8 7 4.3314 1.7346 -2.2242 9 6 5.3021 1.3785 -3.2675 10 6 5.2905 2.4481 -4.3615 11 1 5.4711 3.4261 -3.9154 12 6 3.9803 2.4494 -5.0326 13 7 2.9672 2.4514 -5.5505 14 6 6.3870 2.1437 -5.3842 15 6 6.4570 3.2609 -6.3932 16 1 5.7861 4.1035 -6.3133 17 6 7.3774 3.2072 -7.4183 18 7 8.1947 2.1813 -7.5153 19 14 7.4647 4.5923 -8.6686 20 1 8.4212 5.6256 -8.1968 21 1 7.9231 4.0527 -9.9739 22 1 6.1191 5.1997 -8.8292 23 6 4.8404 2.8464 -1.3805 24 6 4.0281 2.7448 -0.0716 25 1 3.1661 3.4110 -0.1083 26 6 4.9122 3.0838 1.1301 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 5.2199 0.6759 1.2449 31 1 3.7400 1.0958 2.1404 32 1 3.8409 -0.4495 1.2626 33 1 3.4300 -0.1118 -1.6739 34 1 5.0918 0.1305 -1.0524 35 1 5.0340 0.4143 -3.6994 36 1 6.2988 1.3165 -2.8306 37 1 7.3457 2.0549 -4.8733 38 1 6.1588 1.2076 -5.8937 39 1 8.8424 2.1438 -8.2363 40 1 5.9036 2.7149 -1.1793 41 1 4.6603 3.8054 -1.8663 42 1 5.7885 2.4355 1.1309 43 1 5.2307 4.1242 1.0650 44 1 4.3480 2.9331 2.0505 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602925787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:31 Heat of formation + Delta-G solvation = -66.505878 kcal Electronic energy + Delta-G solvation = -24249.013959 eV Core-core repulsion = 20780.236698 eV Total energy + Delta-G solvation = -3468.777261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17030 -39.16466 -36.81909 -36.30823 -34.44660 -33.32471 -31.45824 -31.40366 -27.97282 -27.63030 -26.01454 -25.63043 -23.63729 -22.05921 -21.71786 -21.17358 -19.06322 -17.45996 -17.24144 -16.67949 -16.44352 -16.39282 -15.34688 -15.10417 -14.53873 -14.33890 -14.24249 -14.10472 -13.59810 -13.12293 -13.07555 -12.98457 -12.58757 -12.35608 -12.26508 -12.18939 -11.95553 -11.86011 -11.77403 -11.39357 -11.25067 -11.11524 -11.03149 -10.93359 -10.85514 -10.69074 -10.56051 -10.52796 -10.36095 -10.16527 -9.52570 -9.22395 -8.46569 -8.41059 -6.09369 -4.12230 2.12344 2.53983 3.29690 3.36650 3.41908 3.74619 3.85486 3.96964 4.16479 4.30846 4.42040 4.61035 4.80959 4.91700 4.92976 4.96453 5.02083 5.16728 5.20971 5.28236 5.28928 5.31245 5.39940 5.47732 5.51335 5.62888 5.68253 5.69937 5.72095 5.82916 5.95182 5.96594 6.04770 6.20485 6.31243 6.35780 6.48045 6.84455 7.06568 7.42071 7.53134 7.64818 7.86208 8.23800 8.62245 8.92540 9.53276 11.01574 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.003507 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.501570 B = 7981.351307 C = 8434.097927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.480 3.520 4 O -0.501 6.501 5 C -0.053 4.053 6 C -0.139 4.139 7 C 0.046 3.954 8 N -0.515 5.515 9 C 0.052 3.948 10 C 0.014 3.986 11 H 0.099 0.901 12 C 0.255 3.745 13 N -0.480 5.480 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.035 3.965 24 C -0.090 4.090 25 H 0.102 0.898 26 C -0.144 4.144 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.262 0.738 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 -5.176 21.351 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.322 3.678 4 O -0.387 6.387 5 C -0.055 4.055 6 C -0.196 4.196 7 C -0.083 4.083 8 N -0.239 5.239 9 C -0.077 4.077 10 C -0.008 4.008 11 H 0.117 0.883 12 C -0.062 4.062 13 N -0.157 5.157 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.092 4.092 24 C -0.109 4.109 25 H 0.120 0.880 26 C -0.202 4.202 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.272 -4.813 20.163 22.319 hybrid contribution 0.993 0.561 -0.323 1.185 sum -7.279 -4.253 19.840 21.556 Atomic orbital electron populations 1.23258 0.76445 1.03591 1.02555 1.86479 1.23289 1.33454 1.84157 1.23399 0.91584 0.81230 0.71567 1.90632 1.66782 1.36370 1.44935 1.21278 0.87227 0.98773 0.98239 1.21963 1.01956 1.00697 0.95014 1.23172 1.00721 0.94390 0.89973 1.65470 1.43376 1.05024 1.10008 1.22420 0.94058 0.99265 0.91944 1.19170 0.86927 0.99933 0.94749 0.88280 1.28928 0.93581 0.91979 0.91680 1.81054 1.13395 1.09804 1.11407 1.19176 0.91311 0.98026 0.92195 1.21142 1.18505 1.05843 1.10847 0.92502 1.24945 0.95451 0.95868 0.97676 1.69937 1.20975 1.29575 1.32601 0.86596 0.78458 0.82247 0.80829 1.20475 1.21153 1.19829 1.23301 0.97144 0.96744 0.92058 1.22074 0.99930 0.93572 0.95290 0.87961 1.21951 0.99274 1.01920 0.97009 0.91757 0.88149 0.92097 0.90361 0.91680 0.91342 0.89319 0.91814 0.90116 0.92220 0.94460 0.95570 0.92815 0.92653 0.89346 0.92059 0.91988 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.10 10.26 -39.25 -0.40 -4.50 16 3 C 0.48 6.18 6.53 36.01 0.24 6.42 16 4 O -0.50 -7.84 15.02 -18.75 -0.28 -8.12 16 5 C -0.05 -0.56 0.97 -154.28 -0.15 -0.71 16 6 C -0.14 -1.05 7.20 37.16 0.27 -0.78 16 7 C 0.05 0.52 5.53 -2.18 -0.01 0.50 16 8 N -0.52 -7.11 5.04 -229.97 -1.16 -8.27 16 9 C 0.05 0.77 4.19 -3.83 -0.02 0.75 16 10 C 0.01 0.27 2.26 -93.40 -0.21 0.05 16 11 H 0.10 1.75 7.28 -51.93 -0.38 1.37 16 12 C 0.26 5.52 13.67 -20.70 -0.28 5.24 16 13 N -0.48 -11.33 18.55 42.22 0.78 -10.54 16 14 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -14.03 8.60 -34.44 -0.30 -14.32 16 16 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.04 0.42 5.45 -2.18 -0.01 0.41 16 24 C -0.09 -0.97 3.24 -89.24 -0.29 -1.26 16 25 H 0.10 1.34 6.48 -51.93 -0.34 1.00 16 26 C -0.14 -1.16 7.94 37.15 0.29 -0.86 16 27 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 30 H 0.08 0.49 6.62 -51.93 -0.34 0.15 16 31 H 0.06 0.46 6.97 -51.93 -0.36 0.10 16 32 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.09 1.06 7.64 -51.93 -0.40 0.67 16 34 H 0.06 0.60 7.71 -51.93 -0.40 0.20 16 35 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 36 H 0.06 0.78 7.77 -51.93 -0.40 0.37 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.06 0.58 7.44 -51.93 -0.39 0.20 16 41 H 0.09 1.12 7.73 -51.93 -0.40 0.72 16 42 H 0.06 0.43 6.68 -51.93 -0.35 0.08 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.44 6.88 -51.93 -0.36 0.08 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -32.63 359.19 -6.58 -39.21 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -7.02 Total: -3.86 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 0.37 Total: -0.95 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.36 Total: -43.55 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.68 Total: -12.62 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.63 -6.58 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602925787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.294 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds