Wall clock time and date at job start Tue Mar 31 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34220 * 116.99989 * 2 1 4 4 O 1.20824 * 120.00137 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99796 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.27435 * 300.70041 * 5 3 2 7 7 C 1.53990 * 110.30842 * 62.79219 * 5 3 2 8 8 N 1.47903 * 107.05845 * 117.78689 * 7 5 3 9 9 C 1.46904 * 110.99749 * 145.84229 * 8 7 5 10 10 C 1.53002 * 109.46926 * 170.00088 * 9 8 7 11 11 H 1.08998 * 109.47262 * 304.99891 * 10 9 8 12 12 C 1.47200 * 109.46824 * 65.00239 * 10 9 8 13 13 N 7.71239 * 141.43147 * 332.14911 * 2 1 3 14 14 C 1.53002 * 109.46899 * 185.00093 * 10 9 8 15 15 C 1.50699 * 109.46849 * 175.00014 * 14 10 9 16 16 H 1.07997 * 120.00316 * 0.02562 * 15 14 10 17 17 C 1.37874 * 120.00039 * 179.97438 * 15 14 10 18 18 N 1.31521 * 119.99833 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00308 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47033 * 89.99921 * 19 17 15 21 21 H 1.48496 * 109.47329 * 210.00313 * 19 17 15 22 22 H 1.48496 * 109.47047 * 330.00092 * 19 17 15 23 23 C 1.48533 * 105.81875 * 25.33283 * 8 7 5 24 24 C 1.54597 * 110.38951 * 178.55708 * 5 3 2 25 25 H 1.09005 * 110.72514 * 337.43808 * 24 5 3 26 26 C 1.52996 * 110.72714 * 100.72798 * 24 5 3 27 27 H 1.09005 * 109.47428 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47379 * 299.99899 * 1 2 3 29 29 H 1.08999 * 109.47337 * 59.99727 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.63514 * 6 5 3 31 31 H 1.09001 * 109.46832 * 60.63705 * 6 5 3 32 32 H 1.09004 * 109.47261 * 300.63686 * 6 5 3 33 33 H 1.09001 * 109.91815 * 237.14264 * 7 5 3 34 34 H 1.09001 * 109.92018 * 358.23850 * 7 5 3 35 35 H 1.08999 * 109.47096 * 290.00042 * 9 8 7 36 36 H 1.09002 * 109.46820 * 50.00078 * 9 8 7 37 37 H 1.09002 * 109.46918 * 294.99668 * 14 10 9 38 38 H 1.08999 * 109.47413 * 55.00327 * 14 10 9 39 39 H 0.97006 * 119.99718 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.66928 * 79.22560 * 23 8 7 41 41 H 1.09004 * 110.66580 * 202.19112 * 23 8 7 42 42 H 1.09008 * 109.47165 * 59.99267 * 26 24 5 43 43 H 1.08995 * 109.47533 * 179.97438 * 26 24 5 44 44 H 1.09003 * 109.46613 * 299.99931 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1336 0.5710 1.2350 7 6 4.1351 0.6430 -1.2834 8 7 4.8492 1.7127 -2.0137 9 6 6.0226 1.1772 -2.7169 10 6 6.5880 2.2468 -3.6535 11 1 5.8018 2.5957 -4.3231 12 6 7.0931 3.3779 -2.8584 13 7 7.4820 4.2513 -2.2463 14 6 7.7318 1.6509 -4.4767 15 6 8.2072 2.6657 -5.4843 16 1 7.7405 3.6385 -5.5325 17 6 9.2386 2.3526 -6.3440 18 7 9.8072 1.1682 -6.2850 19 14 9.8284 3.6107 -7.5925 20 1 10.9090 4.4341 -6.9929 21 1 10.3488 2.9096 -8.7937 22 1 8.6962 4.4884 -7.9835 23 6 5.2523 2.7056 -0.9852 24 6 4.0285 2.7496 -0.0360 25 1 3.2460 3.3890 -0.4449 26 6 4.4421 3.2222 1.3591 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 5.2211 0.6455 1.2281 31 1 3.8413 -0.4790 1.2210 32 1 3.7426 1.0450 2.1353 33 1 4.8282 -0.1584 -1.0275 34 1 3.3231 0.2501 -1.8952 35 1 6.7831 0.8922 -1.9898 36 1 5.7300 0.3029 -3.2983 37 1 8.5551 1.3834 -3.8143 38 1 7.3795 0.7601 -4.9967 39 1 10.5327 0.9478 -6.8901 40 1 6.1409 2.3680 -0.4519 41 1 5.4253 3.6813 -1.4394 42 1 5.2634 2.6048 1.7232 43 1 4.7641 4.2623 1.3098 44 1 3.5939 3.1358 2.0382 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602925788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:34 Heat of formation + Delta-G solvation = -62.343979 kcal Electronic energy + Delta-G solvation = -24265.201084 eV Core-core repulsion = 20796.604296 eV Total energy + Delta-G solvation = -3468.596788 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22933 -39.30129 -36.95807 -36.38964 -34.46327 -33.37021 -31.46338 -31.42133 -27.98038 -27.61974 -26.18256 -25.66585 -23.62729 -22.07479 -21.77317 -21.10411 -19.14366 -17.45839 -17.26903 -16.85860 -16.52795 -16.39915 -15.35882 -15.15618 -14.56337 -14.43482 -14.13882 -13.89033 -13.59164 -13.48389 -12.95150 -12.78713 -12.64373 -12.49054 -12.42061 -12.25103 -12.10033 -11.97767 -11.92525 -11.62052 -11.13591 -11.07814 -11.02415 -10.93957 -10.78029 -10.74692 -10.62000 -10.43619 -10.39985 -10.23611 -9.53805 -9.23549 -8.45755 -8.39439 -6.09922 -4.12883 2.02500 2.46421 3.30067 3.36613 3.40317 3.58164 3.64622 3.92301 4.13557 4.31333 4.41386 4.57706 4.76554 4.80060 4.85619 4.92856 4.95262 5.15943 5.23766 5.26682 5.28299 5.34549 5.40780 5.48506 5.52910 5.60489 5.66150 5.72626 5.75592 5.81796 5.96830 6.05549 6.07799 6.18773 6.24458 6.34531 6.53487 6.83860 7.06551 7.42548 7.52105 7.55972 7.85372 8.22887 8.41269 8.91667 9.52670 11.00960 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.003334 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.170090 B = 8396.160647 C = 8815.732072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.478 3.522 4 O -0.501 6.501 5 C -0.061 4.061 6 C -0.139 4.139 7 C 0.051 3.949 8 N -0.517 5.517 9 C 0.054 3.946 10 C 0.009 3.991 11 H 0.111 0.889 12 C 0.248 3.752 13 N -0.479 5.479 14 C 0.033 3.967 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.033 3.967 24 C -0.081 4.081 25 H 0.101 0.899 26 C -0.144 4.144 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.024 0.976 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.858 -5.957 14.660 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.320 3.680 4 O -0.388 6.388 5 C -0.063 4.063 6 C -0.196 4.196 7 C -0.077 4.077 8 N -0.240 5.240 9 C -0.075 4.075 10 C -0.013 4.013 11 H 0.129 0.871 12 C -0.068 4.068 13 N -0.156 5.156 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.094 4.094 24 C -0.099 4.099 25 H 0.119 0.881 26 C -0.201 4.201 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.698 -4.230 15.086 22.179 hybrid contribution 0.602 -0.017 -0.487 0.774 sum -15.097 -4.246 14.599 21.426 Atomic orbital electron populations 1.23271 0.76460 1.03660 1.02548 1.86509 1.23274 1.33412 1.84075 1.23493 0.91506 0.81260 0.71691 1.90649 1.66844 1.36387 1.44909 1.21465 0.87060 0.99148 0.98581 1.21966 1.01817 1.00490 0.95350 1.22888 0.98984 0.94062 0.91799 1.64870 1.23501 1.11414 1.24235 1.22460 0.90400 0.97743 0.96857 1.19296 1.00525 0.87664 0.93846 0.87139 1.29138 0.91518 0.94024 0.92109 1.81004 1.10974 1.11524 1.12111 1.19165 0.90786 0.96733 0.93912 1.21142 1.17832 0.99967 1.17448 0.92489 1.24949 0.96262 0.95326 0.97416 1.69941 1.24595 1.20245 1.38282 0.86593 0.79181 0.81458 0.80865 1.20691 1.21092 1.19696 1.23608 0.95602 0.98284 0.91956 1.22180 0.98444 0.92822 0.96503 0.88068 1.21845 1.01199 1.01746 0.95329 0.88080 0.92069 0.91776 0.90728 0.91147 0.91565 0.91806 0.89577 0.93745 0.88637 0.95759 0.94212 0.92807 0.93231 0.88851 0.92087 0.91936 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.66 10.47 -39.23 -0.41 -4.07 16 3 C 0.48 5.73 6.37 36.01 0.23 5.96 16 4 O -0.50 -7.29 15.19 -18.75 -0.28 -7.58 16 5 C -0.06 -0.66 0.84 -154.30 -0.13 -0.79 16 6 C -0.14 -1.19 6.98 37.16 0.26 -0.93 16 7 C 0.05 0.57 5.97 -2.76 -0.02 0.56 16 8 N -0.52 -7.10 5.24 -230.44 -1.21 -8.31 16 9 C 0.05 0.79 4.38 -3.82 -0.02 0.78 16 10 C 0.01 0.16 2.42 -93.40 -0.23 -0.07 16 11 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 12 C 0.25 4.99 10.85 -20.79 -0.23 4.76 16 13 N -0.48 -10.23 17.69 42.12 0.75 -9.49 16 14 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 15 C -0.53 -13.95 8.60 -34.44 -0.30 -14.25 16 16 H 0.06 1.51 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.03 0.46 4.37 -1.90 -0.01 0.46 16 24 C -0.08 -0.98 2.93 -88.76 -0.26 -1.24 16 25 H 0.10 1.43 6.91 -51.93 -0.36 1.07 16 26 C -0.14 -1.49 8.03 37.16 0.30 -1.19 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.07 0.61 7.46 -51.93 -0.39 0.23 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.53 6.89 -51.93 -0.36 0.17 16 33 H 0.06 0.64 7.31 -51.93 -0.38 0.26 16 34 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 35 H 0.04 0.64 7.83 -51.93 -0.41 0.23 16 36 H 0.10 1.26 8.08 -51.93 -0.42 0.84 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.05 0.70 7.69 -51.93 -0.40 0.30 16 41 H 0.09 1.51 5.73 -51.93 -0.30 1.21 16 42 H 0.06 0.57 6.60 -51.92 -0.34 0.23 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -30.96 355.74 -6.69 -37.65 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.06 Total: -2.81 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 0.45 Total: -2.39 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.27 Total: -42.46 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.70 Total: -11.64 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.96 -6.69 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602925788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.699 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds