Wall clock time and date at job start Tue Mar 31 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34220 * 116.99989 * 2 1 4 4 O 1.20824 * 120.00137 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99796 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.27435 * 300.70041 * 5 3 2 7 7 C 1.53990 * 110.30842 * 62.79219 * 5 3 2 8 8 N 1.47903 * 107.05845 * 117.78689 * 7 5 3 9 9 C 1.46904 * 110.99749 * 145.84229 * 8 7 5 10 10 C 1.53002 * 109.46926 * 170.00088 * 9 8 7 11 11 H 1.08998 * 109.47262 * 304.99891 * 10 9 8 12 12 C 1.47200 * 109.46824 * 65.00239 * 10 9 8 13 13 N 7.71239 * 141.43147 * 332.14911 * 2 1 3 14 14 C 1.53002 * 109.46899 * 185.00093 * 10 9 8 15 15 C 1.50699 * 109.46849 * 175.00014 * 14 10 9 16 16 H 1.07997 * 120.00316 * 0.02562 * 15 14 10 17 17 C 1.37874 * 120.00039 * 179.97438 * 15 14 10 18 18 N 1.31521 * 119.99833 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00308 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47033 * 89.99921 * 19 17 15 21 21 H 1.48496 * 109.47329 * 210.00313 * 19 17 15 22 22 H 1.48496 * 109.47047 * 330.00092 * 19 17 15 23 23 C 1.48533 * 105.81875 * 25.33283 * 8 7 5 24 24 C 1.54597 * 110.38951 * 178.55708 * 5 3 2 25 25 H 1.09005 * 110.72514 * 337.43808 * 24 5 3 26 26 C 1.52996 * 110.72714 * 100.72798 * 24 5 3 27 27 H 1.09005 * 109.47428 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47379 * 299.99899 * 1 2 3 29 29 H 1.08999 * 109.47337 * 59.99727 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.63514 * 6 5 3 31 31 H 1.09001 * 109.46832 * 60.63705 * 6 5 3 32 32 H 1.09004 * 109.47261 * 300.63686 * 6 5 3 33 33 H 1.09001 * 109.91815 * 237.14264 * 7 5 3 34 34 H 1.09001 * 109.92018 * 358.23850 * 7 5 3 35 35 H 1.08999 * 109.47096 * 290.00042 * 9 8 7 36 36 H 1.09002 * 109.46820 * 50.00078 * 9 8 7 37 37 H 1.09002 * 109.46918 * 294.99668 * 14 10 9 38 38 H 1.08999 * 109.47413 * 55.00327 * 14 10 9 39 39 H 0.97006 * 119.99718 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.66928 * 79.22560 * 23 8 7 41 41 H 1.09004 * 110.66580 * 202.19112 * 23 8 7 42 42 H 1.09008 * 109.47165 * 59.99267 * 26 24 5 43 43 H 1.08995 * 109.47533 * 179.97438 * 26 24 5 44 44 H 1.09003 * 109.46613 * 299.99931 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1336 0.5710 1.2350 7 6 4.1351 0.6430 -1.2834 8 7 4.8492 1.7127 -2.0137 9 6 6.0226 1.1772 -2.7169 10 6 6.5880 2.2468 -3.6535 11 1 5.8018 2.5957 -4.3231 12 6 7.0931 3.3779 -2.8584 13 7 7.4820 4.2513 -2.2463 14 6 7.7318 1.6509 -4.4767 15 6 8.2072 2.6657 -5.4843 16 1 7.7405 3.6385 -5.5325 17 6 9.2386 2.3526 -6.3440 18 7 9.8072 1.1682 -6.2850 19 14 9.8284 3.6107 -7.5925 20 1 10.9090 4.4341 -6.9929 21 1 10.3488 2.9096 -8.7937 22 1 8.6962 4.4884 -7.9835 23 6 5.2523 2.7056 -0.9852 24 6 4.0285 2.7496 -0.0360 25 1 3.2460 3.3890 -0.4449 26 6 4.4421 3.2222 1.3591 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 5.2211 0.6455 1.2281 31 1 3.8413 -0.4790 1.2210 32 1 3.7426 1.0450 2.1353 33 1 4.8282 -0.1584 -1.0275 34 1 3.3231 0.2501 -1.8952 35 1 6.7831 0.8922 -1.9898 36 1 5.7300 0.3029 -3.2983 37 1 8.5551 1.3834 -3.8143 38 1 7.3795 0.7601 -4.9967 39 1 10.5327 0.9478 -6.8901 40 1 6.1409 2.3680 -0.4519 41 1 5.4253 3.6813 -1.4394 42 1 5.2634 2.6048 1.7232 43 1 4.7641 4.2623 1.3098 44 1 3.5939 3.1358 2.0382 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602925788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:33 Heat of formation + Delta-G solvation = -81.083043 kcal Electronic energy + Delta-G solvation = -24266.013671 eV Core-core repulsion = 20796.604296 eV Total energy + Delta-G solvation = -3469.409375 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.14386 -40.31496 -38.26873 -37.43500 -35.91927 -35.04695 -33.09148 -32.31146 -29.07128 -28.62723 -27.12178 -26.93917 -24.87032 -23.52675 -23.07730 -22.14806 -20.04795 -18.55355 -18.36916 -18.31122 -18.02372 -17.40034 -16.71697 -16.24643 -16.13247 -15.43993 -15.18869 -14.90808 -14.79386 -14.51105 -14.23685 -14.13708 -13.87203 -13.79878 -13.63469 -13.32779 -13.28778 -12.99476 -12.94735 -12.88536 -12.72546 -12.51315 -12.43725 -12.11897 -11.97415 -11.90600 -11.79898 -11.73747 -11.58447 -11.34894 -11.32919 -11.09011 -10.54487 -9.45971 -8.18996 -6.26643 1.11853 1.39991 1.42245 1.51458 1.68307 1.97639 2.01423 2.41753 2.87277 3.16327 3.22266 3.27403 3.41792 3.74747 3.96540 3.98595 4.15848 4.26190 4.32396 4.34879 4.36610 4.45342 4.51372 4.61319 4.68637 4.71444 4.72482 4.77440 4.79702 4.86797 4.95835 4.98395 5.04432 5.09695 5.18932 5.33633 5.36868 5.48198 5.63521 5.78268 5.82206 5.95329 6.22286 6.68805 6.77615 6.88276 7.41685 8.91793 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.003334 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.170090 B = 8396.160647 C = 8815.732072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.480 3.520 4 O -0.534 6.534 5 C -0.058 4.058 6 C -0.136 4.136 7 C 0.051 3.949 8 N -0.527 5.527 9 C 0.064 3.936 10 C 0.018 3.982 11 H 0.116 0.884 12 C 0.255 3.745 13 N -0.503 5.503 14 C 0.040 3.960 15 C -0.539 4.539 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.922 5.922 19 Si 0.946 3.054 20 H -0.284 1.284 21 H -0.278 1.278 22 H -0.266 1.266 23 C 0.037 3.963 24 C -0.078 4.078 25 H 0.077 0.923 26 C -0.139 4.139 27 H 0.134 0.866 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.115 0.885 37 H 0.003 0.997 38 H 0.038 0.962 39 H 0.264 0.736 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.657 -7.149 15.310 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.324 3.676 4 O -0.423 6.423 5 C -0.059 4.059 6 C -0.193 4.193 7 C -0.076 4.076 8 N -0.251 5.251 9 C -0.065 4.065 10 C -0.004 4.004 11 H 0.134 0.866 12 C -0.060 4.060 13 N -0.181 5.181 14 C 0.002 3.998 15 C -0.577 4.577 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.772 3.228 20 H -0.210 1.210 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.091 4.091 24 C -0.097 4.097 25 H 0.096 0.904 26 C -0.197 4.197 27 H 0.152 0.848 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.133 0.867 37 H 0.022 0.978 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.512 -5.436 15.739 23.451 hybrid contribution 0.780 0.347 -0.688 1.097 sum -15.732 -5.089 15.051 22.359 Atomic orbital electron populations 1.23561 0.74902 1.05779 1.02369 1.86499 1.24796 1.32291 1.83493 1.23679 0.91873 0.81265 0.70809 1.90641 1.67597 1.37514 1.46565 1.21460 0.86636 0.98213 0.99633 1.21989 1.02057 1.01059 0.94193 1.22949 0.99197 0.93700 0.91772 1.64777 1.23012 1.12398 1.24901 1.22335 0.90899 0.96672 0.96583 1.19209 0.99007 0.87969 0.94205 0.86593 1.29476 0.90948 0.93926 0.91688 1.80993 1.11655 1.12335 1.13134 1.18975 0.91519 0.96043 0.93290 1.21545 1.17700 1.00433 1.18071 0.93074 1.25672 0.96694 0.96940 0.99276 1.70024 1.25221 1.21654 1.39249 0.85733 0.78627 0.79450 0.79018 1.20993 1.20271 1.19071 1.23471 0.96377 0.97082 0.92176 1.22074 0.96960 0.93733 0.96945 0.90430 1.21823 1.01938 1.01556 0.94366 0.84825 0.91933 0.92364 0.90109 0.89704 0.90920 0.89715 0.89234 0.93272 0.86662 0.97843 0.94336 0.92688 0.93225 0.91529 0.90705 0.92618 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.53 10.47 -51.32 -0.54 -7.07 16 3 C 0.48 10.84 6.37 71.24 0.45 11.30 16 4 O -0.53 -15.34 15.19 21.97 0.33 -15.00 16 5 C -0.06 -1.15 0.84 -52.05 -0.04 -1.20 16 6 C -0.14 -1.93 6.98 71.98 0.50 -1.43 16 7 C 0.05 1.04 5.97 86.44 0.52 1.56 16 8 N -0.53 -13.77 5.24 -882.99 -4.63 -18.40 16 9 C 0.06 1.77 4.38 86.30 0.38 2.14 16 10 C 0.02 0.65 2.42 -12.60 -0.03 0.62 16 11 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 12 C 0.26 10.26 10.85 89.45 0.97 11.23 16 13 N -0.50 -21.65 17.69 20.00 0.35 -21.30 16 14 C 0.04 1.85 4.42 29.85 0.13 1.98 16 15 C -0.54 -28.62 8.60 25.60 0.22 -28.40 16 16 H 0.05 2.71 7.59 -2.91 -0.02 2.69 16 17 C 0.01 0.72 5.46 84.65 0.46 1.19 16 18 N -0.92 -52.51 13.29 21.45 0.28 -52.23 16 19 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.04 1.01 4.37 86.65 0.38 1.39 16 24 C -0.08 -1.86 2.93 -9.59 -0.03 -1.89 16 25 H 0.08 2.23 6.91 -2.38 -0.02 2.21 16 26 C -0.14 -2.74 8.03 71.98 0.58 -2.17 16 27 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 29 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 30 H 0.08 1.08 7.46 -2.39 -0.02 1.06 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.96 6.89 -2.38 -0.02 0.94 16 33 H 0.08 1.40 7.31 -2.39 -0.02 1.38 16 34 H 0.09 1.78 7.66 -2.39 -0.02 1.76 16 35 H 0.05 1.33 7.83 -2.39 -0.02 1.31 16 36 H 0.12 2.75 8.08 -2.39 -0.02 2.73 16 37 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 40 H 0.05 1.35 7.69 -2.39 -0.02 1.33 16 41 H 0.07 2.19 5.73 -2.39 -0.01 2.17 16 42 H 0.07 1.26 6.60 -2.38 -0.02 1.24 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 Total: -1.00 -66.27 355.74 4.50 -61.77 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.98 Total: 8.79 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.69 Total: -2.12 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -3.99 Total: -91.93 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.20 Total: -22.07 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -66.27 4.50 -61.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602925788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.310 kcal (2) G-P(sol) polarization free energy of solvation -66.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds