Wall clock time and date at job start Tue Mar 31 2020 07:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 5 5 C 1.50708 * 109.47042 * 65.00504 * 4 2 1 6 6 H 1.08004 * 119.99423 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99744 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47735 * 89.99581 * 9 7 5 11 11 H 1.48498 * 109.46856 * 210.00092 * 9 7 5 12 12 H 1.48506 * 109.46711 * 329.99483 * 9 7 5 13 13 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 14 14 N 1.46901 * 109.46916 * 294.99594 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.47224 * 325.00460 * 15 14 13 17 17 C 1.53002 * 109.47102 * 85.00132 * 15 14 13 18 18 C 1.50702 * 109.47206 * 205.00135 * 15 14 13 19 19 O 1.21286 * 119.99719 * 0.02562 * 18 15 14 20 20 N 1.34770 * 120.00124 * 180.02562 * 18 15 14 21 21 C 1.46499 * 120.00190 * 179.97438 * 20 18 15 22 22 C 1.50696 * 109.47149 * 179.97438 * 21 20 18 23 23 C 1.34513 * 125.78767 * 89.72132 * 22 21 20 24 24 C 1.41389 * 106.84004 * 179.88602 * 23 22 21 25 25 C 1.34515 * 106.83927 * 0.37519 * 24 23 22 26 26 O 1.34301 * 108.42237 * 359.76522 * 25 24 23 27 27 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 28 28 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 29 29 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47139 * 185.00096 * 4 2 1 31 31 H 1.09001 * 109.47414 * 305.00040 * 4 2 1 32 32 H 0.97000 * 119.99957 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46889 * 174.99975 * 13 2 1 34 34 H 1.08995 * 109.47384 * 54.99615 * 13 2 1 35 35 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 36 36 H 1.09000 * 109.46959 * 59.99562 * 17 15 14 37 37 H 1.08999 * 109.47105 * 180.02562 * 17 15 14 38 38 H 1.08996 * 109.46950 * 299.99914 * 17 15 14 39 39 H 0.97006 * 120.00253 * 0.02562 * 20 18 15 40 40 H 1.09003 * 109.47448 * 300.00430 * 21 20 18 41 41 H 1.09004 * 109.46604 * 60.00278 * 21 20 18 42 42 H 1.07995 * 126.58105 * 0.02562 * 23 22 21 43 43 H 1.07995 * 126.57811 * 180.16062 * 24 23 22 44 44 H 1.07996 * 125.78628 * 179.75631 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 2.6753 -1.5195 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.5648 1.5414 -5.5825 11 1 1.3109 -0.3712 -6.3888 12 1 0.2281 1.2850 -4.9869 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1257 -0.6265 3.6672 16 1 2.0823 -1.7074 3.5335 17 6 3.5692 -0.2049 3.9491 18 6 1.2504 -0.2283 4.8276 19 8 0.3225 0.5332 4.6540 20 7 1.4987 -0.7184 6.0583 21 6 0.6482 -0.3310 7.1864 22 6 1.1348 -1.0121 8.4395 23 6 2.0500 -0.5236 9.2957 24 6 2.2016 -1.4821 10.3240 25 6 1.3761 -2.5027 10.0303 26 8 0.7324 -2.2125 8.8878 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7996 -1.2055 31 1 1.6053 -1.7199 -1.2950 32 1 2.9226 -1.8425 -4.7317 33 1 3.1262 -0.7995 1.2056 34 1 1.6052 -1.7198 1.2953 35 1 1.9882 0.9873 2.3966 36 1 3.6126 0.8760 4.0827 37 1 3.9213 -0.6979 4.8552 38 1 4.2022 -0.4929 3.1098 39 1 2.2411 -1.3272 6.1972 40 1 0.6916 0.7500 7.3198 41 1 -0.3802 -0.6313 6.9859 42 1 2.5679 0.4206 9.2145 43 1 2.8572 -1.4102 11.1792 44 1 1.2521 -3.4027 10.6140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:24 Heat of formation + Delta-G solvation = -34.701137 kcal Electronic energy + Delta-G solvation = -22796.385594 eV Core-core repulsion = 19328.987489 eV Total energy + Delta-G solvation = -3467.398104 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.00984 -39.88426 -36.98453 -35.19983 -34.45100 -33.38257 -32.23495 -30.90780 -29.35583 -26.69661 -26.44062 -25.30184 -23.58049 -22.20331 -22.16834 -21.01296 -20.38951 -19.18584 -18.04018 -16.97802 -16.70297 -16.23763 -15.90551 -15.59294 -15.02510 -14.64896 -14.60239 -14.21410 -14.04047 -13.55397 -13.38974 -13.26964 -13.09299 -12.72233 -12.56432 -12.41855 -12.29526 -12.06700 -11.52248 -11.47690 -11.30036 -10.84170 -10.71596 -10.39390 -10.27738 -10.23933 -9.85222 -9.66558 -9.33047 -9.11618 -9.00209 -8.90231 -8.30041 -8.09056 -5.95050 -3.95684 1.16789 2.11928 2.48913 2.64122 3.10745 3.35380 3.41599 3.45763 4.15147 4.38746 4.52617 4.57284 4.60891 4.65926 4.89664 4.98437 5.02691 5.21143 5.35714 5.40859 5.43744 5.49641 5.53405 5.62849 5.74092 5.81753 5.96796 6.02423 6.11901 6.19843 6.44583 6.59250 6.68237 6.76752 7.02169 7.17444 7.26818 7.28640 7.40355 7.63421 7.72510 7.88485 8.05452 8.18088 8.49973 9.10667 9.67557 11.16504 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.045505 B = 0.002163 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.172488 B =12943.580246 C =13105.359666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.664 5.664 15 C 0.069 3.931 16 H 0.103 0.897 17 C -0.179 4.179 18 C 0.520 3.480 19 O -0.512 6.512 20 N -0.737 5.737 21 C 0.204 3.796 22 C -0.034 4.034 23 C -0.186 4.186 24 C -0.218 4.218 25 C -0.031 4.031 26 O -0.171 6.171 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.027 0.973 34 H 0.067 0.933 35 H 0.345 0.655 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.401 0.599 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 -1.223 29.040 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.063 4.063 14 N -0.295 5.295 15 C -0.045 4.045 16 H 0.121 0.879 17 C -0.239 4.239 18 C 0.306 3.694 19 O -0.385 6.385 20 N -0.393 5.393 21 C 0.080 3.920 22 C -0.085 4.085 23 C -0.206 4.206 24 C -0.237 4.237 25 C -0.099 4.099 26 O -0.067 6.067 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.164 0.836 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.178 -1.216 28.622 28.648 hybrid contribution 1.375 0.283 -0.543 1.505 sum 1.553 -0.933 28.078 28.137 Atomic orbital electron populations 1.21598 0.95583 1.00589 1.00391 1.21195 0.96175 0.98939 0.93768 0.92734 1.19125 0.95841 0.95589 0.90434 1.21250 1.34455 1.08265 0.90966 0.92522 1.25022 0.95406 0.95105 0.99106 1.69964 1.39243 1.21230 1.23332 0.86622 0.78942 0.79788 0.82828 1.20800 1.21342 1.19864 1.22232 0.97255 0.97632 0.89152 1.60196 1.63707 1.05726 0.99885 1.21440 0.91718 1.00875 0.90482 0.87894 1.22475 0.96227 1.02390 1.02779 1.20832 0.85290 0.80349 0.82949 1.90718 1.29932 1.34127 1.83731 1.46136 1.34335 1.51165 1.07636 1.19525 0.95220 0.97989 0.79231 1.22363 1.00680 0.86221 0.99189 1.21728 1.00998 1.02092 0.95821 1.21896 1.04237 0.95359 1.02249 1.24154 0.96444 1.01425 0.87898 1.84065 1.55184 1.32795 1.34612 0.93585 0.92805 0.94244 0.96946 0.96545 0.93147 0.95481 0.91459 0.83580 0.91809 0.91946 0.90971 0.76467 0.88389 0.89731 0.83144 0.83217 0.77885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 8.89 37.15 0.33 -2.21 16 2 C -0.08 -1.69 2.48 -90.62 -0.22 -1.92 16 3 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.07 1.11 4.87 -3.82 -0.02 1.09 16 14 N -0.66 -9.98 5.19 -107.94 -0.56 -10.54 16 15 C 0.07 0.81 3.00 -68.86 -0.21 0.60 16 16 H 0.10 1.13 7.80 -51.93 -0.41 0.73 16 17 C -0.18 -1.65 9.06 37.16 0.34 -1.32 16 18 C 0.52 6.49 7.22 -10.99 -0.08 6.41 16 19 O -0.51 -8.55 16.43 5.55 0.09 -8.46 16 20 N -0.74 -6.71 5.44 -61.47 -0.33 -7.05 16 21 C 0.20 1.77 6.20 -5.20 -0.03 1.74 16 22 C -0.03 -0.28 6.69 -35.63 -0.24 -0.52 16 23 C -0.19 -1.35 10.81 -39.70 -0.43 -1.78 16 24 C -0.22 -1.39 10.91 -39.70 -0.43 -1.83 16 25 C -0.03 -0.19 12.09 29.42 0.36 0.16 16 26 O -0.17 -1.49 10.65 5.70 0.06 -1.43 16 27 H 0.05 0.89 7.75 -51.92 -0.40 0.48 16 28 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.03 0.44 7.44 -51.93 -0.39 0.06 16 34 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 35 H 0.35 5.10 8.47 -39.29 -0.33 4.76 16 36 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 37 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 38 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 39 H 0.40 2.84 7.88 -40.82 -0.32 2.52 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.20 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -33.71 368.27 -7.77 -41.48 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.14 Total: 2.18 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.15 Total: -12.26 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.16 Total: -43.98 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.15 Total: -9.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.71 -7.77 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.775 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds