Wall clock time and date at job start Tue Mar 31 2020 07:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47168 * 2 1 4 4 N 1.46902 * 109.47255 * 119.99785 * 2 1 3 5 5 C 1.46901 * 111.00023 * 274.99786 * 4 2 1 6 6 C 1.53000 * 109.46818 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.47398 * 305.00447 * 6 5 4 8 8 C 1.53002 * 109.47233 * 65.00620 * 6 5 4 9 9 C 1.52997 * 109.47060 * 185.00277 * 6 5 4 10 10 C 1.50698 * 109.47721 * 175.00208 * 9 6 5 11 11 H 1.08008 * 119.99163 * 0.02562 * 10 9 6 12 12 C 1.37869 * 120.00614 * 180.02562 * 10 9 6 13 13 N 1.31515 * 119.99741 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00175 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47239 * 89.99935 * 14 12 10 16 16 H 1.48495 * 109.47323 * 209.99675 * 14 12 10 17 17 H 1.48505 * 109.47112 * 330.00112 * 14 12 10 18 18 C 1.50700 * 109.47108 * 239.99954 * 2 1 3 19 19 O 1.21281 * 119.99887 * 239.99479 * 18 2 1 20 20 N 1.34775 * 119.99828 * 60.00278 * 18 2 1 21 21 C 1.46501 * 119.99776 * 179.97438 * 20 18 2 22 22 C 1.50705 * 109.47077 * 179.97438 * 21 20 18 23 23 C 1.34514 * 125.78534 * 90.00080 * 22 21 20 24 24 C 1.41387 * 106.84142 * 180.02562 * 23 22 21 25 25 C 1.34513 * 106.83695 * 359.97438 * 24 23 22 26 26 O 1.34300 * 125.79234 * 269.69164 * 22 21 20 27 27 H 1.09007 * 109.46944 * 300.00028 * 1 2 3 28 28 H 1.08996 * 109.47520 * 60.00185 * 1 2 3 29 29 H 1.08996 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.00892 * 110.99942 * 38.95900 * 4 2 1 31 31 H 1.09002 * 109.46747 * 60.00311 * 5 4 2 32 32 H 1.08991 * 109.47315 * 300.00378 * 5 4 2 33 33 H 1.09000 * 109.46986 * 299.99797 * 8 6 5 34 34 H 1.09002 * 109.47075 * 59.99068 * 8 6 5 35 35 H 1.08996 * 109.47407 * 180.02562 * 8 6 5 36 36 H 1.09000 * 109.47325 * 295.00173 * 9 6 5 37 37 H 1.09008 * 109.47017 * 55.00082 * 9 6 5 38 38 H 0.97006 * 119.99397 * 180.02562 * 13 12 10 39 39 H 0.96999 * 120.00083 * 359.97438 * 20 18 2 40 40 H 1.08994 * 109.47346 * 299.99263 * 21 20 18 41 41 H 1.09006 * 109.47132 * 59.99832 * 21 20 18 42 42 H 1.07998 * 126.58082 * 359.96786 * 23 22 21 43 43 H 1.07998 * 126.58178 * 179.97438 * 24 23 22 44 44 H 1.08001 * 125.79077 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5951 -0.5331 3.5744 7 1 1.9692 -1.4080 3.7500 8 6 4.0387 -0.9789 3.3329 9 6 2.5428 0.3851 4.7972 10 6 2.9307 -0.3940 6.0275 11 1 3.1891 -1.4395 5.9453 12 6 2.9557 0.2277 7.2578 13 7 2.6415 1.5008 7.3577 14 14 3.4358 -0.7383 8.7829 15 1 4.9042 -0.6474 8.9845 16 1 2.7379 -0.1743 9.9661 17 1 3.0469 -2.1611 8.6104 18 6 2.0323 -0.7104 -1.2305 19 8 2.7296 -1.6964 -1.1191 20 7 1.7067 -0.2499 -2.4545 21 6 2.1955 -0.9402 -3.6507 22 6 1.6926 -0.2302 -4.8812 23 6 2.3206 0.7710 -5.5235 24 6 1.4995 1.1362 -6.6150 25 6 0.4191 0.3359 -6.5747 26 8 0.5443 -0.4936 -5.5259 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.4497 -1.4979 1.4100 31 1 1.0871 0.6164 2.5525 32 1 2.7588 1.0462 2.1182 33 1 4.0760 -1.6330 2.4617 34 1 4.6646 -0.1040 3.1572 35 1 4.4037 -1.5177 4.2072 36 1 3.2365 1.2144 4.6587 37 1 1.5314 0.7734 4.9169 38 1 2.6595 1.9383 8.2233 39 1 1.1488 0.5386 -2.5435 40 1 3.2855 -0.9397 -3.6506 41 1 1.8326 -1.9681 -3.6509 42 1 3.2695 1.2121 -5.2562 43 1 1.7010 1.9093 -7.3417 44 1 -0.4066 0.3539 -7.2706 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:27 Heat of formation + Delta-G solvation = -34.742297 kcal Electronic energy + Delta-G solvation = -22795.673857 eV Core-core repulsion = 19328.273968 eV Total energy + Delta-G solvation = -3467.399889 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.00964 -39.88423 -36.98465 -35.19868 -34.45116 -33.38137 -32.23502 -30.90771 -29.35286 -26.69825 -26.44119 -25.30195 -23.57835 -22.19405 -22.17658 -21.01024 -20.38941 -19.18626 -18.03504 -16.98384 -16.70167 -16.23899 -15.90681 -15.64477 -14.90403 -14.66768 -14.54682 -14.27517 -14.16618 -13.44194 -13.37388 -13.26411 -13.06501 -12.79683 -12.60408 -12.39364 -12.25876 -12.07009 -11.52572 -11.47942 -11.30472 -10.81155 -10.73334 -10.39082 -10.29640 -10.23801 -9.85225 -9.66154 -9.33028 -9.11652 -9.00113 -8.90277 -8.30113 -8.09082 -5.95174 -3.95779 1.16740 2.12478 2.48560 2.63979 3.10917 3.35563 3.41620 3.45417 4.15252 4.38884 4.52567 4.58307 4.61409 4.64971 4.90929 4.99981 5.01161 5.21656 5.36259 5.40771 5.44603 5.50218 5.53788 5.62876 5.73971 5.82261 5.97047 6.02825 6.11974 6.19733 6.44283 6.59036 6.68051 6.76518 7.01987 7.17369 7.26475 7.28332 7.40368 7.63360 7.72433 7.88319 8.05364 8.18104 8.49919 9.10570 9.67479 11.16374 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.046001 B = 0.002161 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.533877 B =12953.800607 C =13123.498906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.069 3.931 3 H 0.103 0.897 4 N -0.664 5.664 5 C 0.066 3.934 6 C -0.082 4.082 7 H 0.054 0.946 8 C -0.124 4.124 9 C 0.028 3.972 10 C -0.511 4.511 11 H 0.057 0.943 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.520 3.480 19 O -0.512 6.512 20 N -0.737 5.737 21 C 0.204 3.796 22 C -0.035 4.035 23 C -0.185 4.185 24 C -0.217 4.217 25 C -0.032 4.032 26 O -0.172 6.172 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.345 0.655 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.016 0.984 37 H 0.012 0.988 38 H 0.259 0.741 39 H 0.401 0.599 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 0.302 -28.354 28.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.045 4.045 3 H 0.121 0.879 4 N -0.295 5.295 5 C -0.063 4.063 6 C -0.101 4.101 7 H 0.073 0.927 8 C -0.181 4.181 9 C -0.010 4.010 10 C -0.549 4.549 11 H 0.075 0.925 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.199 1.199 18 C 0.306 3.694 19 O -0.385 6.385 20 N -0.393 5.393 21 C 0.081 3.919 22 C -0.085 4.085 23 C -0.206 4.206 24 C -0.237 4.237 25 C -0.100 4.100 26 O -0.067 6.067 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.164 0.836 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.235 0.765 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.852 -0.464 -28.180 28.598 hybrid contribution -0.917 0.407 0.777 1.269 sum -5.768 -0.057 -27.403 28.003 Atomic orbital electron populations 1.22476 0.95265 1.03023 1.03132 1.21435 0.93792 0.98805 0.90455 0.87876 1.60187 1.56941 1.09613 1.02796 1.22228 0.99022 0.95112 0.89895 1.21198 0.96468 0.98671 0.93758 0.92730 1.21598 0.96111 1.00220 1.00220 1.19122 0.96874 0.94331 0.90655 1.21247 1.45068 0.96595 0.92021 0.92527 1.25023 0.95649 0.94913 0.99059 1.69970 1.49335 1.10031 1.24435 0.86622 0.78550 0.80238 0.82763 1.20727 1.21366 1.19911 1.20833 0.80012 0.84776 0.83801 1.90717 1.36048 1.25481 1.86262 1.46135 1.55312 1.32867 1.04960 1.19524 0.99160 0.95412 0.77831 1.22359 0.87199 1.00791 0.98172 1.21750 1.02372 0.99141 0.97290 1.21903 0.95967 1.04038 1.01749 1.24146 1.01499 0.92797 0.91579 1.84054 1.37033 1.50670 1.34992 0.90958 0.91961 0.91818 0.83563 0.95487 0.91456 0.93582 0.94242 0.92819 0.96557 0.96936 0.93152 0.76465 0.88318 0.89824 0.83074 0.83197 0.77901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.06 37.16 0.34 -1.36 16 2 C 0.07 0.81 3.00 -68.87 -0.21 0.61 16 3 H 0.10 1.12 7.80 -51.93 -0.40 0.71 16 4 N -0.66 -9.98 5.19 -107.95 -0.56 -10.54 16 5 C 0.07 1.11 4.87 -3.82 -0.02 1.09 16 6 C -0.08 -1.70 2.48 -90.62 -0.22 -1.92 16 7 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 8 C -0.12 -2.53 8.89 37.16 0.33 -2.20 16 9 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 10 C -0.51 -14.45 8.41 -34.44 -0.29 -14.73 16 11 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 14 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.52 6.49 7.22 -10.99 -0.08 6.41 16 19 O -0.51 -8.55 16.43 5.56 0.09 -8.46 16 20 N -0.74 -6.71 5.44 -61.47 -0.33 -7.05 16 21 C 0.20 1.78 6.20 -5.19 -0.03 1.74 16 22 C -0.04 -0.29 6.69 -35.62 -0.24 -0.53 16 23 C -0.19 -1.39 10.81 -39.70 -0.43 -1.81 16 24 C -0.22 -1.41 10.91 -39.70 -0.43 -1.84 16 25 C -0.03 -0.20 12.09 29.42 0.36 0.16 16 26 O -0.17 -1.47 10.65 5.71 0.06 -1.41 16 27 H 0.07 0.72 7.45 -51.93 -0.39 0.33 16 28 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.35 5.13 8.47 -39.30 -0.33 4.80 16 31 H 0.03 0.44 7.44 -51.93 -0.39 0.06 16 32 H 0.07 1.15 8.05 -51.93 -0.42 0.74 16 33 H 0.05 0.88 7.75 -51.93 -0.40 0.48 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 1.16 6.95 -51.93 -0.36 0.80 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.40 2.84 7.88 -40.82 -0.32 2.52 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.20 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -33.64 368.27 -7.77 -41.40 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.14 Total: 2.28 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.15 Total: -12.33 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.16 Total: -43.96 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.15 Total: -9.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.64 -7.77 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.662 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds