Wall clock time and date at job start Tue Mar 31 2020 07:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47168 * 2 1 4 4 N 1.46902 * 109.47255 * 119.99785 * 2 1 3 5 5 C 1.46901 * 111.00023 * 274.99786 * 4 2 1 6 6 C 1.53000 * 109.46818 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.47398 * 305.00447 * 6 5 4 8 8 C 1.53002 * 109.47233 * 65.00620 * 6 5 4 9 9 C 1.52997 * 109.47060 * 185.00277 * 6 5 4 10 10 C 1.50698 * 109.47721 * 175.00208 * 9 6 5 11 11 H 1.08008 * 119.99163 * 0.02562 * 10 9 6 12 12 C 1.37869 * 120.00614 * 180.02562 * 10 9 6 13 13 N 1.31515 * 119.99741 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00175 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47239 * 89.99935 * 14 12 10 16 16 H 1.48495 * 109.47323 * 209.99675 * 14 12 10 17 17 H 1.48505 * 109.47112 * 330.00112 * 14 12 10 18 18 C 1.50700 * 109.47108 * 239.99954 * 2 1 3 19 19 O 1.21281 * 119.99887 * 239.99479 * 18 2 1 20 20 N 1.34775 * 119.99828 * 60.00278 * 18 2 1 21 21 C 1.46501 * 119.99776 * 179.97438 * 20 18 2 22 22 C 1.50705 * 109.47077 * 179.97438 * 21 20 18 23 23 C 1.34514 * 125.78534 * 90.00080 * 22 21 20 24 24 C 1.41387 * 106.84142 * 180.02562 * 23 22 21 25 25 C 1.34513 * 106.83695 * 359.97438 * 24 23 22 26 26 O 1.34300 * 125.79234 * 269.69164 * 22 21 20 27 27 H 1.09007 * 109.46944 * 300.00028 * 1 2 3 28 28 H 1.08996 * 109.47520 * 60.00185 * 1 2 3 29 29 H 1.08996 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.00892 * 110.99942 * 38.95900 * 4 2 1 31 31 H 1.09002 * 109.46747 * 60.00311 * 5 4 2 32 32 H 1.08991 * 109.47315 * 300.00378 * 5 4 2 33 33 H 1.09000 * 109.46986 * 299.99797 * 8 6 5 34 34 H 1.09002 * 109.47075 * 59.99068 * 8 6 5 35 35 H 1.08996 * 109.47407 * 180.02562 * 8 6 5 36 36 H 1.09000 * 109.47325 * 295.00173 * 9 6 5 37 37 H 1.09008 * 109.47017 * 55.00082 * 9 6 5 38 38 H 0.97006 * 119.99397 * 180.02562 * 13 12 10 39 39 H 0.96999 * 120.00083 * 359.97438 * 20 18 2 40 40 H 1.08994 * 109.47346 * 299.99263 * 21 20 18 41 41 H 1.09006 * 109.47132 * 59.99832 * 21 20 18 42 42 H 1.07998 * 126.58082 * 359.96786 * 23 22 21 43 43 H 1.07998 * 126.58178 * 179.97438 * 24 23 22 44 44 H 1.08001 * 125.79077 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5951 -0.5331 3.5744 7 1 1.9692 -1.4080 3.7500 8 6 4.0387 -0.9789 3.3329 9 6 2.5428 0.3851 4.7972 10 6 2.9307 -0.3940 6.0275 11 1 3.1891 -1.4395 5.9453 12 6 2.9557 0.2277 7.2578 13 7 2.6415 1.5008 7.3577 14 14 3.4358 -0.7383 8.7829 15 1 4.9042 -0.6474 8.9845 16 1 2.7379 -0.1743 9.9661 17 1 3.0469 -2.1611 8.6104 18 6 2.0323 -0.7104 -1.2305 19 8 2.7296 -1.6964 -1.1191 20 7 1.7067 -0.2499 -2.4545 21 6 2.1955 -0.9402 -3.6507 22 6 1.6926 -0.2302 -4.8812 23 6 2.3206 0.7710 -5.5235 24 6 1.4995 1.1362 -6.6150 25 6 0.4191 0.3359 -6.5747 26 8 0.5443 -0.4936 -5.5259 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.4497 -1.4979 1.4100 31 1 1.0871 0.6164 2.5525 32 1 2.7588 1.0462 2.1182 33 1 4.0760 -1.6330 2.4617 34 1 4.6646 -0.1040 3.1572 35 1 4.4037 -1.5177 4.2072 36 1 3.2365 1.2144 4.6587 37 1 1.5314 0.7734 4.9169 38 1 2.6595 1.9383 8.2233 39 1 1.1488 0.5386 -2.5435 40 1 3.2855 -0.9397 -3.6506 41 1 1.8326 -1.9681 -3.6509 42 1 3.2695 1.2121 -5.2562 43 1 1.7010 1.9093 -7.3417 44 1 -0.4066 0.3539 -7.2706 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618888200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:26 Heat of formation + Delta-G solvation = -57.824423 kcal Electronic energy + Delta-G solvation = -22796.674773 eV Core-core repulsion = 19328.273968 eV Total energy + Delta-G solvation = -3468.400805 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.54695 -40.87392 -38.35165 -36.14462 -35.95770 -34.19587 -33.90804 -31.78087 -30.43765 -28.63529 -27.13225 -26.73399 -24.95885 -23.69894 -22.70973 -21.61569 -21.38172 -20.71956 -18.76973 -18.47967 -17.75881 -17.40067 -16.73571 -16.60743 -16.44666 -16.00528 -15.63332 -15.49503 -15.13289 -14.70080 -14.38754 -14.21343 -14.09378 -13.77141 -13.61067 -13.53460 -13.40178 -13.14905 -13.03209 -12.93340 -12.74254 -12.54746 -12.41856 -12.19632 -12.00887 -11.48080 -11.08156 -11.06617 -10.91862 -10.74317 -10.51514 -10.18593 -9.54529 -9.25412 -8.16157 -6.24388 0.61023 1.40908 1.41713 1.52676 1.61252 1.66499 1.94071 2.31590 2.43542 3.17223 3.30435 3.60957 3.78339 4.02254 4.10086 4.11184 4.13889 4.22950 4.36576 4.37682 4.50558 4.55802 4.67795 4.76990 4.88743 4.90444 4.97883 5.00176 5.04310 5.13869 5.16988 5.30072 5.31200 5.47914 5.52084 5.55982 5.57936 5.82909 5.91175 5.99775 6.15697 6.33111 6.39904 6.55832 6.91190 7.26299 7.43387 8.95667 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.046001 B = 0.002161 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.533877 B =12953.800607 C =13123.498906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.069 3.931 3 H 0.116 0.884 4 N -0.675 5.675 5 C 0.081 3.919 6 C -0.075 4.075 7 H 0.052 0.948 8 C -0.114 4.114 9 C 0.034 3.966 10 C -0.529 4.529 11 H 0.058 0.942 12 C -0.002 4.002 13 N -0.933 5.933 14 Si 0.959 3.041 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.523 3.477 19 O -0.560 6.560 20 N -0.719 5.719 21 C 0.207 3.793 22 C -0.052 4.052 23 C -0.188 4.188 24 C -0.230 4.230 25 C -0.028 4.028 26 O -0.189 6.189 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.346 0.654 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.035 0.965 35 H 0.036 0.964 36 H -0.008 1.008 37 H -0.009 1.009 38 H 0.262 0.738 39 H 0.413 0.587 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.160 0.840 43 H 0.169 0.831 44 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 0.358 -29.794 30.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.044 4.044 3 H 0.134 0.866 4 N -0.306 5.306 5 C -0.047 4.047 6 C -0.094 4.094 7 H 0.071 0.929 8 C -0.171 4.171 9 C -0.003 4.003 10 C -0.567 4.567 11 H 0.076 0.924 12 C -0.200 4.200 13 N -0.574 5.574 14 Si 0.784 3.216 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.190 1.190 18 C 0.309 3.691 19 O -0.437 6.437 20 N -0.374 5.374 21 C 0.084 3.916 22 C -0.102 4.102 23 C -0.208 4.208 24 C -0.249 4.249 25 C -0.095 4.095 26 O -0.086 6.086 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.165 0.835 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.250 0.750 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.177 0.823 43 H 0.187 0.813 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -5.535 -0.385 -29.661 30.175 hybrid contribution -0.738 0.439 1.100 1.395 sum -6.273 0.054 -28.561 29.242 Atomic orbital electron populations 1.22400 0.93161 1.03203 1.04318 1.21511 0.95394 0.98822 0.88703 0.86619 1.60057 1.57998 1.09564 1.02999 1.21897 0.99015 0.94666 0.89140 1.21017 0.96981 0.97842 0.93546 0.92926 1.21483 0.95656 1.00042 0.99937 1.18996 0.94684 0.94225 0.92426 1.21644 1.44875 0.96917 0.93248 0.92394 1.25921 0.95609 0.95928 1.02499 1.70093 1.50342 1.11632 1.25365 0.85530 0.78363 0.79030 0.78630 1.20039 1.20800 1.18961 1.20912 0.79333 0.84105 0.84732 1.90700 1.38407 1.27613 1.86975 1.45977 1.54423 1.32759 1.04253 1.19455 0.99147 0.95066 0.77969 1.22189 0.87858 1.01637 0.98512 1.22003 1.02680 0.98664 0.97409 1.22219 0.95931 1.04797 1.01951 1.24894 1.02218 0.91540 0.90884 1.84043 1.37181 1.51526 1.35831 0.91215 0.89297 0.92152 0.83528 0.94922 0.91583 0.92237 0.94553 0.94468 0.99000 0.99018 0.92958 0.75012 0.88383 0.90655 0.82282 0.81304 0.74590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.06 71.98 0.65 -2.24 16 2 C 0.07 1.53 3.00 44.17 0.13 1.66 16 3 H 0.12 2.28 7.80 -2.38 -0.02 2.26 16 4 N -0.68 -19.75 5.19 -495.45 -2.57 -22.32 16 5 C 0.08 2.72 4.87 86.30 0.42 3.14 16 6 C -0.07 -3.12 2.48 -10.79 -0.03 -3.14 16 7 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 8 C -0.11 -4.64 8.89 71.98 0.64 -4.00 16 9 C 0.03 1.80 4.45 29.85 0.13 1.93 16 10 C -0.53 -30.26 8.41 25.60 0.22 -30.05 16 11 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 12 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 13 N -0.93 -57.10 13.29 21.44 0.28 -56.82 16 14 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 15 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 C 0.52 12.57 7.22 87.66 0.63 13.20 16 19 O -0.56 -18.66 16.43 -3.03 -0.05 -18.71 16 20 N -0.72 -12.20 5.44 -466.78 -2.54 -14.74 16 21 C 0.21 3.49 6.20 85.63 0.53 4.02 16 22 C -0.05 -0.80 6.69 24.83 0.17 -0.63 16 23 C -0.19 -2.52 10.81 22.19 0.24 -2.28 16 24 C -0.23 -2.47 10.91 22.19 0.24 -2.23 16 25 C -0.03 -0.28 12.09 66.97 0.81 0.53 16 26 O -0.19 -2.95 10.65 -2.48 -0.03 -2.98 16 27 H 0.07 1.25 7.45 -2.38 -0.02 1.23 16 28 H 0.09 1.02 7.56 -2.39 -0.02 1.00 16 29 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 30 H 0.35 10.05 8.47 -89.70 -0.76 9.29 16 31 H 0.03 1.05 7.44 -2.39 -0.02 1.03 16 32 H 0.07 2.22 8.05 -2.39 -0.02 2.21 16 33 H 0.06 2.25 7.75 -2.39 -0.02 2.24 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.04 1.60 6.95 -2.39 -0.02 1.58 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 38 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 39 H 0.41 5.01 7.88 -92.71 -0.73 4.28 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.24 0.40 8.06 -2.91 -0.02 0.38 16 Total: -1.00 -72.97 368.27 1.88 -71.09 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.49 Total: 17.12 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 5.25 Total: -19.76 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -4.83 Total: -93.88 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.08 Total: -21.69 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.97 1.88 -71.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.261 kcal (2) G-P(sol) polarization free energy of solvation -72.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds