Wall clock time and date at job start Tue Mar 31 2020 07:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46736 * 2 1 4 4 C 1.52998 * 109.46919 * 120.00152 * 2 1 3 5 5 C 1.50705 * 109.47215 * 294.99678 * 4 2 1 6 6 H 1.07998 * 119.99930 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99612 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99483 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00401 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.46986 * 89.99990 * 9 7 5 11 11 H 1.48499 * 109.47484 * 209.99740 * 9 7 5 12 12 H 1.48497 * 109.47305 * 329.99993 * 9 7 5 13 13 C 1.52998 * 109.47017 * 240.00161 * 2 1 3 14 14 N 1.46897 * 109.47146 * 64.99905 * 13 2 1 15 15 C 1.46906 * 111.00172 * 180.02562 * 14 13 2 16 16 H 1.08998 * 109.46389 * 324.99645 * 15 14 13 17 17 C 1.52997 * 109.47302 * 84.99810 * 15 14 13 18 18 C 1.50697 * 109.47180 * 205.00376 * 15 14 13 19 19 O 1.21283 * 120.00261 * 359.97438 * 18 15 14 20 20 N 1.34777 * 120.00075 * 180.02562 * 18 15 14 21 21 C 1.46500 * 120.00084 * 180.02562 * 20 18 15 22 22 C 1.50696 * 109.46995 * 179.97438 * 21 20 18 23 23 C 1.34522 * 125.78707 * 89.71502 * 22 21 20 24 24 C 1.41386 * 106.83532 * 179.88790 * 23 22 21 25 25 C 1.34506 * 106.84440 * 0.37223 * 24 23 22 26 26 O 1.34301 * 125.79095 * 270.02059 * 22 21 20 27 27 H 1.09002 * 109.47279 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46904 * 300.00151 * 1 2 3 29 29 H 1.08993 * 109.47039 * 59.99958 * 1 2 3 30 30 H 1.09004 * 109.47597 * 54.99887 * 4 2 1 31 31 H 1.08999 * 109.46874 * 174.99889 * 4 2 1 32 32 H 0.97007 * 120.00240 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.46917 * 305.00085 * 13 2 1 34 34 H 1.09001 * 109.47361 * 185.00020 * 13 2 1 35 35 H 1.00896 * 111.00123 * 56.04903 * 14 13 2 36 36 H 1.09002 * 109.47153 * 180.02562 * 17 15 14 37 37 H 1.09001 * 109.46832 * 60.00356 * 17 15 14 38 38 H 1.09004 * 109.47261 * 300.00337 * 17 15 14 39 39 H 0.96996 * 119.99636 * 359.97438 * 20 18 15 40 40 H 1.09001 * 109.47049 * 299.99628 * 21 20 18 41 41 H 1.09000 * 109.47381 * 59.99594 * 21 20 18 42 42 H 1.08001 * 126.57945 * 0.02562 * 23 22 21 43 43 H 1.08001 * 126.57364 * 180.16526 * 24 23 22 44 44 H 1.08005 * 125.78921 * 179.74940 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0801 0.9742 2.3758 7 6 1.9933 -0.4018 3.7283 8 7 1.6450 0.2771 4.7994 9 14 2.9648 -1.9877 3.9027 10 1 4.4181 -1.6832 3.8783 11 1 2.6177 -2.6419 5.1898 12 1 2.6311 -2.8988 2.7785 13 6 2.0401 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1247 -0.6271 -3.6673 16 1 3.0883 -1.0986 -3.4742 17 6 1.1121 -1.6917 -4.0938 18 6 2.2757 0.3920 -4.7672 19 8 2.0142 1.5570 -4.5545 20 7 2.7002 0.0085 -5.9875 21 6 2.8475 0.9993 -7.0566 22 6 3.3329 0.3175 -8.3098 23 6 2.5533 -0.2184 -9.2661 24 6 3.4187 -0.7453 -10.2523 25 6 4.6753 -0.5072 -9.8357 26 8 4.6172 0.1369 -8.6585 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6054 -1.7199 1.2952 31 1 3.1263 -0.7995 1.2055 32 1 1.8929 -0.0454 5.6800 33 1 1.6054 -1.7198 -1.2952 34 1 3.1264 -0.7995 -1.2057 35 1 1.9882 0.9873 -2.3967 36 1 1.4636 -2.1851 -5.0000 37 1 0.1486 -1.2201 -4.2868 38 1 1.0030 -2.4288 -3.2982 39 1 2.9090 -0.9233 -6.1576 40 1 1.8843 1.4717 -7.2493 41 1 3.5695 1.7572 -6.7527 42 1 1.4736 -0.2399 -9.2792 43 1 3.1268 -1.2461 -11.1635 44 1 5.5778 -0.7868 -10.3588 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:29 Heat of formation + Delta-G solvation = -32.376458 kcal Electronic energy + Delta-G solvation = -22847.906392 eV Core-core repulsion = 19380.609093 eV Total energy + Delta-G solvation = -3467.297299 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.06618 -40.13240 -36.99402 -35.39542 -34.44887 -33.44351 -32.22816 -31.05274 -29.62864 -27.30373 -26.53091 -25.42984 -23.42787 -22.24573 -21.78906 -21.08900 -20.30445 -19.27709 -18.12810 -17.19157 -16.84856 -16.59283 -16.15790 -15.83734 -15.04500 -14.99074 -14.44108 -14.15639 -13.99762 -13.74737 -13.32112 -13.27747 -13.13334 -12.91338 -12.56999 -12.42471 -12.35555 -12.06601 -11.97288 -11.65458 -11.38457 -10.91660 -10.67065 -10.44705 -10.34544 -10.06819 -9.88083 -9.61944 -9.50186 -9.39983 -9.04802 -9.00575 -8.48179 -8.25153 -5.98284 -3.94953 1.10473 2.06635 2.38722 2.44832 2.99363 3.33241 3.40663 3.44111 4.07961 4.29339 4.48050 4.49627 4.53957 4.55948 4.88914 4.98167 5.06780 5.13181 5.30680 5.35019 5.44082 5.47214 5.57098 5.60561 5.68051 5.77435 5.94101 5.98566 6.03249 6.11898 6.32249 6.44915 6.62502 6.64484 6.87048 7.01901 7.10540 7.19474 7.26608 7.34141 7.51452 7.62063 7.86465 7.92751 8.61774 9.08156 9.64430 11.15193 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034072 B = 0.002303 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.587390 B =12152.809906 C =12395.675622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.063 3.937 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.670 5.670 15 C 0.067 3.933 16 H 0.068 0.932 17 C -0.135 4.135 18 C 0.517 3.483 19 O -0.524 6.524 20 N -0.731 5.731 21 C 0.203 3.797 22 C -0.037 4.037 23 C -0.184 4.184 24 C -0.218 4.218 25 C -0.030 4.030 26 O -0.171 6.171 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.016 0.984 31 H 0.008 0.992 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.354 0.646 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.404 0.596 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 -5.018 -31.641 32.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.305 5.305 15 C -0.046 4.046 16 H 0.086 0.914 17 C -0.193 4.193 18 C 0.303 3.697 19 O -0.399 6.399 20 N -0.386 5.386 21 C 0.080 3.920 22 C -0.087 4.087 23 C -0.204 4.204 24 C -0.237 4.237 25 C -0.098 4.098 26 O -0.067 6.067 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.176 0.824 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.238 0.762 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.712 -4.311 -31.133 31.648 hybrid contribution 1.573 -1.268 -0.114 2.023 sum 5.285 -5.580 -31.246 32.177 Atomic orbital electron populations 1.21598 0.95147 1.00589 1.00851 1.21004 0.96507 0.99131 0.92629 0.92077 1.19616 0.95329 0.96230 0.93485 1.21143 1.35209 1.09526 0.89066 0.90771 1.25041 0.95777 0.96910 0.95981 1.69919 1.47248 1.39308 0.97979 0.86797 0.80569 0.84557 0.77435 1.20488 1.21511 1.19084 1.22281 0.97042 0.97862 0.89520 1.60501 1.63701 1.06587 0.99690 1.21487 0.98801 0.94043 0.90304 0.91421 1.21749 0.99266 0.97423 1.00899 1.20867 0.75763 0.89944 0.83090 1.90728 1.48649 1.19023 1.81502 1.46059 1.69772 1.11956 1.10766 1.19560 1.01805 0.90040 0.80629 1.22315 0.81289 1.05883 0.99240 1.21749 1.01022 1.02674 0.94937 1.21904 0.92670 1.06828 1.02311 1.24166 1.00203 0.99282 0.86165 1.84060 1.28399 1.59989 1.34257 0.94244 0.92219 0.93544 0.96590 0.97418 0.92870 0.91337 0.95709 0.82437 0.92639 0.91299 0.91115 0.76160 0.88140 0.89642 0.83054 0.83153 0.77845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.07 -1.48 2.48 -90.62 -0.22 -1.71 16 3 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.63 8.96 -34.44 -0.31 -14.94 16 6 H 0.07 2.29 7.30 -52.49 -0.38 1.90 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -28.26 13.96 55.43 0.77 -27.48 16 9 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C 0.06 1.00 4.87 -3.83 -0.02 0.98 16 14 N -0.67 -9.87 5.64 -107.95 -0.61 -10.48 16 15 C 0.07 0.77 3.03 -68.86 -0.21 0.56 16 16 H 0.07 0.71 7.80 -51.93 -0.40 0.30 16 17 C -0.14 -1.29 9.31 37.16 0.35 -0.95 16 18 C 0.52 6.09 7.18 -10.99 -0.08 6.01 16 19 O -0.52 -8.14 15.65 5.55 0.09 -8.06 16 20 N -0.73 -6.23 5.44 -61.47 -0.33 -6.56 16 21 C 0.20 1.65 6.20 -5.20 -0.03 1.61 16 22 C -0.04 -0.29 6.69 -35.62 -0.24 -0.52 16 23 C -0.18 -1.26 10.81 -39.70 -0.43 -1.69 16 24 C -0.22 -1.31 10.91 -39.70 -0.43 -1.74 16 25 C -0.03 -0.17 12.09 29.41 0.36 0.18 16 26 O -0.17 -1.41 10.65 5.70 0.06 -1.35 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 29 H 0.05 0.84 7.75 -51.93 -0.40 0.43 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 33 H 0.07 1.07 7.44 -51.93 -0.39 0.69 16 34 H 0.02 0.39 8.06 -51.93 -0.42 -0.02 16 35 H 0.35 5.65 7.45 -39.29 -0.29 5.36 16 36 H 0.05 0.38 7.56 -51.93 -0.39 -0.01 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 39 H 0.40 2.64 7.88 -40.82 -0.32 2.32 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.20 0.45 8.06 -52.48 -0.42 0.03 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -33.71 363.56 -7.41 -41.12 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.07 Total: 2.91 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.14 Total: -12.86 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.17 Total: -44.53 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.15 Total: -9.41 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.71 -7.41 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.744 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds