Wall clock time and date at job start Tue Mar 31 2020 07:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46736 * 2 1 4 4 C 1.52998 * 109.46919 * 120.00152 * 2 1 3 5 5 C 1.50705 * 109.47215 * 294.99678 * 4 2 1 6 6 H 1.07998 * 119.99930 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99612 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99483 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00401 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.46986 * 89.99990 * 9 7 5 11 11 H 1.48499 * 109.47484 * 209.99740 * 9 7 5 12 12 H 1.48497 * 109.47305 * 329.99993 * 9 7 5 13 13 C 1.52998 * 109.47017 * 240.00161 * 2 1 3 14 14 N 1.46897 * 109.47146 * 64.99905 * 13 2 1 15 15 C 1.46906 * 111.00172 * 180.02562 * 14 13 2 16 16 H 1.08998 * 109.46389 * 324.99645 * 15 14 13 17 17 C 1.52997 * 109.47302 * 84.99810 * 15 14 13 18 18 C 1.50697 * 109.47180 * 205.00376 * 15 14 13 19 19 O 1.21283 * 120.00261 * 359.97438 * 18 15 14 20 20 N 1.34777 * 120.00075 * 180.02562 * 18 15 14 21 21 C 1.46500 * 120.00084 * 180.02562 * 20 18 15 22 22 C 1.50696 * 109.46995 * 179.97438 * 21 20 18 23 23 C 1.34522 * 125.78707 * 89.71502 * 22 21 20 24 24 C 1.41386 * 106.83532 * 179.88790 * 23 22 21 25 25 C 1.34506 * 106.84440 * 0.37223 * 24 23 22 26 26 O 1.34301 * 125.79095 * 270.02059 * 22 21 20 27 27 H 1.09002 * 109.47279 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46904 * 300.00151 * 1 2 3 29 29 H 1.08993 * 109.47039 * 59.99958 * 1 2 3 30 30 H 1.09004 * 109.47597 * 54.99887 * 4 2 1 31 31 H 1.08999 * 109.46874 * 174.99889 * 4 2 1 32 32 H 0.97007 * 120.00240 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.46917 * 305.00085 * 13 2 1 34 34 H 1.09001 * 109.47361 * 185.00020 * 13 2 1 35 35 H 1.00896 * 111.00123 * 56.04903 * 14 13 2 36 36 H 1.09002 * 109.47153 * 180.02562 * 17 15 14 37 37 H 1.09001 * 109.46832 * 60.00356 * 17 15 14 38 38 H 1.09004 * 109.47261 * 300.00337 * 17 15 14 39 39 H 0.96996 * 119.99636 * 359.97438 * 20 18 15 40 40 H 1.09001 * 109.47049 * 299.99628 * 21 20 18 41 41 H 1.09000 * 109.47381 * 59.99594 * 21 20 18 42 42 H 1.08001 * 126.57945 * 0.02562 * 23 22 21 43 43 H 1.08001 * 126.57364 * 180.16526 * 24 23 22 44 44 H 1.08005 * 125.78921 * 179.74940 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0801 0.9742 2.3758 7 6 1.9933 -0.4018 3.7283 8 7 1.6450 0.2771 4.7994 9 14 2.9648 -1.9877 3.9027 10 1 4.4181 -1.6832 3.8783 11 1 2.6177 -2.6419 5.1898 12 1 2.6311 -2.8988 2.7785 13 6 2.0401 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1247 -0.6271 -3.6673 16 1 3.0883 -1.0986 -3.4742 17 6 1.1121 -1.6917 -4.0938 18 6 2.2757 0.3920 -4.7672 19 8 2.0142 1.5570 -4.5545 20 7 2.7002 0.0085 -5.9875 21 6 2.8475 0.9993 -7.0566 22 6 3.3329 0.3175 -8.3098 23 6 2.5533 -0.2184 -9.2661 24 6 3.4187 -0.7453 -10.2523 25 6 4.6753 -0.5072 -9.8357 26 8 4.6172 0.1369 -8.6585 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6054 -1.7199 1.2952 31 1 3.1263 -0.7995 1.2055 32 1 1.8929 -0.0454 5.6800 33 1 1.6054 -1.7198 -1.2952 34 1 3.1264 -0.7995 -1.2057 35 1 1.9882 0.9873 -2.3967 36 1 1.4636 -2.1851 -5.0000 37 1 0.1486 -1.2201 -4.2868 38 1 1.0030 -2.4288 -3.2982 39 1 2.9090 -0.9233 -6.1576 40 1 1.8843 1.4717 -7.2493 41 1 3.5695 1.7572 -6.7527 42 1 1.4736 -0.2399 -9.2792 43 1 3.1268 -1.2461 -11.1635 44 1 5.5778 -0.7868 -10.3588 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618888202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:29 Heat of formation + Delta-G solvation = -56.540966 kcal Electronic energy + Delta-G solvation = -22848.954244 eV Core-core repulsion = 19380.609093 eV Total energy + Delta-G solvation = -3468.345150 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.56212 -41.05725 -38.32436 -36.25270 -35.88825 -34.22936 -33.92893 -31.93083 -30.63402 -29.13367 -27.18624 -26.74527 -24.77010 -23.27540 -22.71959 -21.64409 -21.20330 -20.79386 -19.03342 -18.72345 -17.86594 -17.54540 -16.98224 -16.60628 -16.36615 -16.00376 -15.71210 -15.46278 -15.21745 -14.86895 -14.53414 -14.20624 -14.15191 -13.77680 -13.60174 -13.55871 -13.42136 -13.17258 -12.99135 -12.95210 -12.78846 -12.63261 -12.25769 -12.07180 -11.77645 -11.44591 -11.27094 -11.08866 -10.96902 -10.82870 -10.71990 -10.29177 -9.54422 -9.37707 -8.24318 -6.27035 0.59001 1.37211 1.39471 1.50399 1.51467 1.59907 1.92504 2.27900 2.39486 3.10598 3.20572 3.57095 3.69809 4.07908 4.09437 4.10796 4.16578 4.19341 4.33765 4.39118 4.47663 4.50777 4.73938 4.87339 4.87558 4.91023 4.95225 4.97585 4.99260 5.11941 5.12423 5.20722 5.34983 5.40496 5.42335 5.55278 5.56889 5.71358 5.74396 6.01638 6.14586 6.30323 6.37795 6.45501 6.80792 7.09156 7.36122 8.92636 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034072 B = 0.002303 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.587390 B =12152.809906 C =12395.675622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.072 4.072 3 H 0.042 0.958 4 C -0.005 4.005 5 C -0.520 4.520 6 H 0.030 0.970 7 C -0.003 4.003 8 N -0.955 5.955 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.242 1.242 13 C 0.076 3.924 14 N -0.679 5.679 15 C 0.066 3.934 16 H 0.087 0.913 17 C -0.130 4.130 18 C 0.518 3.482 19 O -0.569 6.569 20 N -0.713 5.713 21 C 0.205 3.795 22 C -0.055 4.055 23 C -0.184 4.184 24 C -0.230 4.230 25 C -0.028 4.028 26 O -0.191 6.191 27 H 0.049 0.951 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.016 0.984 32 H 0.264 0.736 33 H 0.083 0.917 34 H 0.032 0.968 35 H 0.345 0.655 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.416 0.584 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.162 0.838 43 H 0.170 0.830 44 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 -7.956 -34.364 35.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 H 0.061 0.939 4 C -0.043 4.043 5 C -0.558 4.558 6 H 0.049 0.951 7 C -0.199 4.199 8 N -0.597 5.597 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.165 1.165 13 C -0.053 4.053 14 N -0.313 5.313 15 C -0.047 4.047 16 H 0.104 0.896 17 C -0.188 4.188 18 C 0.305 3.695 19 O -0.447 6.447 20 N -0.367 5.367 21 C 0.082 3.918 22 C -0.105 4.105 23 C -0.204 4.204 24 C -0.248 4.248 25 C -0.096 4.096 26 O -0.088 6.088 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.165 0.835 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.180 0.820 43 H 0.188 0.812 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.979 -7.284 -33.913 35.042 hybrid contribution 1.151 -0.270 0.637 1.343 sum 6.129 -7.554 -33.276 34.669 Atomic orbital electron populations 1.21486 0.95047 1.00882 0.99817 1.20892 0.96567 0.98275 0.93359 0.93925 1.19558 0.95775 0.96031 0.92923 1.21470 1.34314 1.08593 0.91410 0.95118 1.26074 0.97164 1.01199 0.95463 1.70090 1.49158 1.41721 0.98717 0.85628 0.78963 0.79706 0.78139 1.19414 1.21269 1.16535 1.22019 0.97324 0.97774 0.88187 1.60462 1.64207 1.06210 1.00455 1.21611 1.00240 0.94064 0.88749 0.89581 1.21749 0.98140 0.96645 1.02311 1.20942 0.75364 0.89280 0.83912 1.90715 1.50960 1.20752 1.82304 1.45915 1.68167 1.12732 1.09874 1.19497 1.01679 0.89787 0.80798 1.22177 0.81527 1.07287 0.99469 1.22010 1.01720 1.01859 0.94768 1.22226 0.92614 1.07077 1.02916 1.24895 1.01592 0.97865 0.85229 1.84047 1.28636 1.60667 1.35409 0.93186 0.95628 0.92111 0.95815 0.96585 0.92726 0.89900 0.94969 0.83502 0.89498 0.92541 0.91098 0.74715 0.87974 0.90727 0.82017 0.81229 0.74705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.53 8.89 71.99 0.64 -3.89 16 2 C -0.07 -2.86 2.48 -10.79 -0.03 -2.89 16 3 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.00 -0.23 3.52 29.85 0.10 -0.13 16 5 C -0.52 -30.51 8.96 25.60 0.23 -30.28 16 6 H 0.03 2.00 7.30 -2.91 -0.02 1.98 16 7 C 0.00 -0.19 5.47 84.65 0.46 0.27 16 8 N -0.96 -61.41 13.96 21.45 0.30 -61.11 16 9 Si 0.95 44.77 27.47 68.60 1.88 46.66 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 13 C 0.08 2.30 4.87 86.30 0.42 2.72 16 14 N -0.68 -19.10 5.64 -495.45 -2.79 -21.89 16 15 C 0.07 1.37 3.03 44.17 0.13 1.50 16 16 H 0.09 1.51 7.80 -2.39 -0.02 1.49 16 17 C -0.13 -2.10 9.31 71.98 0.67 -1.43 16 18 C 0.52 11.57 7.18 87.66 0.63 12.20 16 19 O -0.57 -17.71 15.65 -3.04 -0.05 -17.76 16 20 N -0.71 -11.00 5.44 -466.79 -2.54 -13.54 16 21 C 0.21 3.19 6.20 85.63 0.53 3.73 16 22 C -0.05 -0.78 6.69 24.83 0.17 -0.61 16 23 C -0.18 -2.18 10.81 22.19 0.24 -1.94 16 24 C -0.23 -2.20 10.91 22.19 0.24 -1.96 16 25 C -0.03 -0.26 12.09 66.97 0.81 0.55 16 26 O -0.19 -2.87 10.65 -2.51 -0.03 -2.89 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.02 1.14 6.95 -2.39 -0.02 1.12 16 29 H 0.06 2.19 7.75 -2.39 -0.02 2.17 16 30 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 31 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 32 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 33 H 0.08 2.31 7.44 -2.38 -0.02 2.29 16 34 H 0.03 0.94 8.06 -2.39 -0.02 0.92 16 35 H 0.34 10.93 7.45 -89.70 -0.67 10.26 16 36 H 0.09 0.84 7.56 -2.39 -0.02 0.83 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.17 7.45 -2.38 -0.02 1.16 16 39 H 0.42 4.37 7.88 -92.71 -0.73 3.64 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 44 H 0.24 0.30 8.06 -2.91 -0.02 0.28 16 Total: -1.00 -75.29 363.56 1.57 -73.72 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -0.45 Total: 19.00 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 5.25 Total: -22.17 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -5.03 Total: -96.55 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.07 Total: -20.65 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -75.29 1.57 -73.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.175 kcal (2) G-P(sol) polarization free energy of solvation -75.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds