Wall clock time and date at job start Tue Mar 31 2020 07:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47168 * 2 1 4 4 C 1.50705 * 109.47156 * 240.00241 * 2 1 3 5 5 H 1.07997 * 119.99650 * 240.00032 * 4 2 1 6 6 C 1.37881 * 119.99657 * 60.00200 * 4 2 1 7 7 N 1.31509 * 120.00059 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47121 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47183 * 119.99590 * 8 6 4 11 11 H 1.48496 * 109.47143 * 239.99557 * 8 6 4 12 12 N 1.46902 * 109.47197 * 120.00520 * 2 1 3 13 13 C 1.46908 * 110.99786 * 290.19932 * 12 2 1 14 14 C 1.46892 * 111.00026 * 54.15364 * 12 2 1 15 15 N 1.46509 * 109.46843 * 151.18692 * 14 12 2 16 16 C 1.34026 * 122.79972 * 90.02575 * 15 14 12 17 17 O 1.21228 * 125.42166 * 359.97438 * 16 15 14 18 18 C 1.51557 * 109.14809 * 180.02562 * 16 15 14 19 19 C 1.53372 * 103.20438 * 359.97438 * 18 16 15 20 20 C 1.53398 * 110.94415 * 240.00446 * 19 18 16 21 21 C 1.55096 * 103.96795 * 215.18057 * 20 19 18 22 22 C 1.54957 * 102.86303 * 37.19917 * 21 20 19 23 23 C 1.53014 * 111.16961 * 120.41103 * 19 18 16 24 24 C 1.34187 * 122.79535 * 269.73336 * 15 14 12 25 25 O 1.21228 * 125.58585 * 0.02562 * 24 15 14 26 26 H 1.09003 * 109.47571 * 53.79132 * 1 2 3 27 27 H 1.09006 * 109.47257 * 173.78909 * 1 2 3 28 28 H 1.09004 * 109.47062 * 293.78995 * 1 2 3 29 29 H 0.96999 * 119.99956 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.47106 * 183.95257 * 13 12 2 31 31 H 1.09000 * 109.46816 * 63.95465 * 13 12 2 32 32 H 1.08996 * 109.47026 * 303.95742 * 13 12 2 33 33 H 1.08994 * 109.47434 * 271.18542 * 14 12 2 34 34 H 1.09000 * 109.47353 * 31.18820 * 14 12 2 35 35 H 1.08994 * 110.67169 * 118.42400 * 18 16 15 36 36 H 1.09003 * 110.67011 * 241.39762 * 18 16 15 37 37 H 1.08999 * 110.52965 * 333.80407 * 20 19 18 38 38 H 1.09003 * 110.52788 * 96.56169 * 20 19 18 39 39 H 1.09000 * 110.73308 * 278.85238 * 21 20 19 40 40 H 1.09007 * 110.73109 * 155.54151 * 21 20 19 41 41 H 1.08997 * 110.48120 * 203.85540 * 22 21 20 42 42 H 1.09004 * 110.48371 * 81.22567 * 22 21 20 43 43 H 1.08999 * 110.09855 * 240.58266 * 23 19 18 44 44 H 1.09000 * 110.09785 * 2.13190 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 3.1464 -2.2868 -3.6039 10 1 1.1660 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6926 1.1994 13 6 1.7486 0.0949 2.4096 14 6 1.4380 -2.0373 1.3051 15 7 2.3695 -2.9179 2.0145 16 6 2.3529 -3.0708 3.3459 17 8 1.5892 -2.5170 4.1073 18 6 3.4416 -4.0455 3.7480 19 6 4.0849 -4.4244 2.4083 20 6 3.9734 -5.9330 2.1536 21 6 5.2925 -6.2871 1.4187 22 6 6.3335 -5.3800 2.1221 23 6 5.5714 -4.0624 2.3872 24 6 3.3068 -3.6429 1.3849 25 8 3.4979 -3.6620 0.1879 26 1 -0.3634 0.6071 -0.8292 27 1 -0.3634 -1.0217 -0.1112 28 1 -0.3633 0.4146 0.9404 29 1 0.7081 1.1611 -3.4843 30 1 2.1829 -0.4067 3.2743 31 1 0.6716 0.1899 2.5476 32 1 2.1902 1.0859 2.3046 33 1 0.4981 -1.9845 1.8545 34 1 1.2533 -2.4329 0.3064 35 1 4.1683 -3.5626 4.4013 36 1 3.0129 -4.9224 4.2333 37 1 3.9034 -6.4756 3.0964 38 1 3.1129 -6.1513 1.5211 39 1 5.2213 -6.0428 0.3588 40 1 5.5410 -7.3393 1.5576 41 1 7.1875 -5.2019 1.4687 42 1 6.6576 -5.8286 3.0613 43 1 5.7714 -3.3471 1.5894 44 1 5.8686 -3.6435 3.3486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728902698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:34 Heat of formation + Delta-G solvation = -81.461127 kcal Electronic energy + Delta-G solvation = -25489.224338 eV Core-core repulsion = 22019.798569 eV Total energy + Delta-G solvation = -3469.425770 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.14878 -39.88402 -39.11265 -38.14765 -36.54779 -34.77102 -32.68567 -30.73586 -29.76847 -28.23807 -27.52188 -27.24680 -25.43358 -24.07056 -22.30562 -21.59596 -21.08836 -20.01234 -18.61558 -18.15315 -17.47656 -17.33003 -16.88159 -16.53723 -15.92261 -15.70721 -15.53122 -15.39034 -15.38374 -14.83774 -14.55904 -14.14558 -14.08250 -13.86178 -13.61203 -13.31199 -12.92337 -12.80145 -12.69128 -12.62376 -12.47615 -12.41573 -12.23734 -12.13704 -11.98565 -11.94467 -11.75527 -11.34015 -11.21789 -11.10523 -10.86244 -10.81009 -10.53334 -9.17690 -8.17131 -6.25641 0.56984 1.33757 1.36266 1.50829 1.53816 1.83277 2.39186 3.04366 3.12175 3.16173 3.31941 3.46373 3.55899 3.91866 3.94907 4.27991 4.30425 4.35793 4.38689 4.48829 4.51471 4.59925 4.64149 4.70338 4.74068 4.78600 4.79010 4.84918 4.91488 4.93837 5.01870 5.09030 5.19272 5.27178 5.33030 5.34843 5.54856 5.58514 5.72849 5.93237 6.06068 6.27275 6.43487 6.54403 6.79827 6.93646 7.43286 8.89703 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.005983 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.413251 B = 4678.612628 C = 6033.896140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.222 3.778 3 H 0.017 0.983 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.950 3.050 9 H -0.280 1.280 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.556 5.556 13 C 0.034 3.966 14 C 0.279 3.721 15 N -0.572 5.572 16 C 0.519 3.481 17 O -0.519 6.519 18 C -0.127 4.127 19 C -0.093 4.093 20 C -0.098 4.098 21 C -0.128 4.128 22 C -0.113 4.113 23 C -0.106 4.106 24 C 0.528 3.472 25 O -0.508 6.508 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.125 0.875 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.041 0.959 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.226 -14.867 15.183 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.115 3.885 3 H 0.034 0.966 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.180 4.180 7 N -0.556 5.556 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.282 5.282 13 C -0.114 4.114 14 C 0.068 3.932 15 N -0.315 5.315 16 C 0.311 3.689 17 O -0.394 6.394 18 C -0.166 4.166 19 C -0.097 4.097 20 C -0.136 4.136 21 C -0.165 4.165 22 C -0.150 4.150 23 C -0.143 4.143 24 C 0.318 3.682 25 O -0.379 6.379 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.167 0.833 36 H 0.174 0.826 37 H 0.143 0.857 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.059 0.941 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.328 -14.482 14.727 22.270 hybrid contribution -1.101 0.606 -1.563 2.006 sum 7.227 -13.876 13.164 20.447 Atomic orbital electron populations 1.22221 0.99498 0.99837 0.99831 1.19082 0.90432 0.92998 0.85997 0.96558 1.21406 1.30655 1.12431 0.90833 0.92785 1.25548 0.95351 0.95723 1.01403 1.69998 1.37714 1.23891 1.24022 0.85618 0.78278 0.78619 0.79832 1.20485 1.20145 1.20217 1.61836 1.60007 1.02384 1.03940 1.22345 0.98904 0.98113 0.92031 1.21801 0.88279 0.86230 0.96911 1.47325 1.33489 1.40178 1.10520 1.21790 0.84935 0.81689 0.80489 1.90716 1.42896 1.50275 1.55472 1.22867 0.96197 1.00423 0.97112 1.21660 0.97413 0.98352 0.92252 1.22382 0.98633 0.89518 1.03064 1.22587 0.94348 1.01000 0.98608 1.22401 0.97254 0.93566 1.01820 1.22162 0.89493 0.99303 1.03389 1.21376 0.79161 0.78416 0.89223 1.90771 1.66962 1.63556 1.16659 0.91626 0.95301 0.95017 0.92830 0.91692 0.95718 0.91811 0.92027 0.89776 0.83286 0.82594 0.85719 0.92720 0.94041 0.88691 0.91745 0.87995 0.94054 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.66 8.26 71.98 0.59 -7.06 16 2 C 0.22 11.69 2.29 44.17 0.10 11.79 16 3 H 0.02 0.95 8.02 -2.39 -0.02 0.93 16 4 C -0.51 -29.91 7.59 25.60 0.19 -29.71 16 5 H 0.05 3.32 6.93 -2.91 -0.02 3.30 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.92 -53.71 11.39 21.45 0.24 -53.47 16 8 Si 0.95 46.72 29.54 68.60 2.03 48.75 16 9 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 12 N -0.56 -25.44 4.80 -913.84 -4.39 -29.83 16 13 C 0.03 1.34 9.06 127.69 1.16 2.50 16 14 C 0.28 11.83 3.88 170.81 0.66 12.49 16 15 N -0.57 -20.01 2.81 -767.16 -2.15 -22.16 16 16 C 0.52 14.72 7.53 88.05 0.66 15.38 16 17 O -0.52 -17.31 16.10 -2.87 -0.05 -17.36 16 18 C -0.13 -1.99 6.30 30.25 0.19 -1.80 16 19 C -0.09 -1.92 0.90 -52.74 -0.05 -1.97 16 20 C -0.10 -1.55 5.89 31.45 0.19 -1.36 16 21 C -0.13 -2.07 6.92 31.98 0.22 -1.85 16 22 C -0.11 -1.56 6.85 31.78 0.22 -1.34 16 23 C -0.11 -1.94 6.17 31.11 0.19 -1.75 16 24 C 0.53 18.09 6.39 87.67 0.56 18.65 16 25 O -0.51 -22.57 16.99 -2.87 -0.05 -22.62 16 26 H 0.06 3.56 6.26 -2.39 -0.01 3.55 16 27 H 0.03 1.38 7.07 -2.38 -0.02 1.37 16 28 H 0.03 1.39 6.52 -2.38 -0.02 1.38 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.06 2.38 6.18 -2.39 -0.01 2.37 16 31 H 0.02 0.95 6.57 -2.39 -0.02 0.93 16 32 H 0.06 2.42 8.06 -2.39 -0.02 2.41 16 33 H 0.06 2.52 7.42 -2.39 -0.02 2.51 16 34 H 0.08 4.09 5.94 -2.39 -0.01 4.07 16 35 H 0.15 1.53 7.19 -2.39 -0.02 1.51 16 36 H 0.16 1.32 7.43 -2.39 -0.02 1.31 16 37 H 0.12 0.94 7.55 -2.39 -0.02 0.92 16 38 H 0.05 1.08 7.83 -2.39 -0.02 1.06 16 39 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.04 1.07 7.74 -2.39 -0.02 1.06 16 44 H 0.11 1.31 7.16 -2.39 -0.02 1.29 16 Total: -1.00 -73.96 341.02 1.97 -71.99 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.00 Total: 9.21 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 5.34 Total: 15.49 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -6.30 Total: -105.46 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.09 Total: -39.98 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -73.96 1.97 -71.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.476 kcal (2) G-P(sol) polarization free energy of solvation -73.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds