Wall clock time and date at job start Tue Mar 31 2020 07:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47428 * 2 1 4 4 C 1.50707 * 109.47094 * 119.99793 * 2 1 3 5 5 H 1.08005 * 119.99692 * 119.99742 * 4 2 1 6 6 C 1.37872 * 119.99869 * 300.00060 * 4 2 1 7 7 N 1.31517 * 120.00090 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99867 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47139 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47197 * 119.99956 * 8 6 4 11 11 H 1.48494 * 109.46935 * 239.99870 * 8 6 4 12 12 N 1.46903 * 109.47064 * 239.99507 * 2 1 3 13 13 C 1.46895 * 111.00266 * 306.04813 * 12 2 1 14 14 C 1.46899 * 110.99807 * 70.00349 * 12 2 1 15 15 N 1.46499 * 109.47035 * 154.99769 * 14 12 2 16 16 C 1.34028 * 122.79746 * 90.02331 * 15 14 12 17 17 O 1.21227 * 125.42438 * 359.96376 * 16 15 14 18 18 C 1.51555 * 109.15225 * 179.97438 * 16 15 14 19 19 C 1.53385 * 103.20186 * 359.97438 * 18 16 15 20 20 C 1.53401 * 110.94127 * 240.00184 * 19 18 16 21 21 C 1.55097 * 103.96481 * 215.18605 * 20 19 18 22 22 C 1.54960 * 102.86527 * 37.19530 * 21 20 19 23 23 C 1.53012 * 111.16779 * 120.40646 * 19 18 16 24 24 C 1.34192 * 122.80205 * 269.72885 * 15 14 12 25 25 O 1.21227 * 125.58353 * 0.03054 * 24 15 14 26 26 H 1.09001 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47057 * 300.00706 * 1 2 3 28 28 H 1.09005 * 109.47242 * 60.00008 * 1 2 3 29 29 H 0.97004 * 119.99944 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47269 * 183.95546 * 13 12 2 31 31 H 1.09004 * 109.47209 * 303.95783 * 13 12 2 32 32 H 1.08996 * 109.47105 * 63.94873 * 13 12 2 33 33 H 1.09002 * 109.47043 * 274.99997 * 14 12 2 34 34 H 1.09001 * 109.47354 * 35.00059 * 14 12 2 35 35 H 1.08999 * 110.67576 * 118.42386 * 18 16 15 36 36 H 1.09006 * 110.67455 * 241.40276 * 18 16 15 37 37 H 1.09000 * 110.53133 * 333.80345 * 20 19 18 38 38 H 1.08999 * 110.52952 * 96.56382 * 20 19 18 39 39 H 1.09000 * 110.73341 * 278.85022 * 21 20 19 40 40 H 1.09007 * 110.73204 * 155.54343 * 21 20 19 41 41 H 1.08992 * 110.48051 * 203.85473 * 22 21 20 42 42 H 1.09002 * 110.48109 * 81.22762 * 22 21 20 43 43 H 1.08999 * 110.09716 * 240.58032 * 23 19 18 44 44 H 1.08999 * 110.10364 * 2.12509 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1472 -0.1856 4.8161 11 1 1.1677 -1.5864 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 1.4342 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 7 2.7156 -0.2666 -3.4517 16 6 2.4910 -1.2475 -4.3370 17 8 1.4947 -1.9364 -4.3847 18 6 3.6813 -1.3585 -5.2686 19 6 4.6282 -0.2648 -4.7590 20 6 4.9132 0.7686 -5.8563 21 6 6.3899 1.1754 -5.6130 22 6 7.0491 -0.1593 -5.1826 23 6 5.9706 -0.8554 -4.3227 24 6 3.8933 0.3585 -3.6037 25 8 4.2995 1.2738 -2.9204 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.7088 1.1615 3.4844 30 1 1.8663 -2.5522 -2.1647 31 1 1.6464 -2.5988 -0.3989 32 1 0.3555 -1.9521 -1.4397 33 1 0.7417 -0.1074 -2.7608 34 1 1.8499 1.1581 -2.1790 35 1 4.1462 -2.3407 -5.1836 36 1 3.3832 -1.1632 -6.2988 37 1 4.7979 0.3201 -6.8431 38 1 4.2562 1.6317 -5.7485 39 1 6.4600 1.9152 -4.8155 40 1 6.8428 1.5514 -6.5304 41 1 7.9445 0.0309 -4.5911 42 1 7.2896 -0.7650 -6.0564 43 1 6.1442 -0.6507 -3.2663 44 1 5.9831 -1.9304 -4.5025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728902700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:37 Heat of formation + Delta-G solvation = -59.080102 kcal Electronic energy + Delta-G solvation = -25126.318623 eV Core-core repulsion = 21657.863367 eV Total energy + Delta-G solvation = -3468.455256 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.05696 -38.74214 -37.69321 -36.82835 -35.30058 -32.86199 -31.56031 -29.10060 -28.63493 -26.92719 -26.47190 -25.24559 -24.00335 -22.82428 -21.20364 -20.68265 -19.47895 -18.88883 -16.99685 -16.51357 -16.34632 -16.00104 -15.68764 -14.99185 -14.87505 -14.44998 -14.37414 -14.14701 -13.64418 -13.56258 -13.26915 -13.10730 -12.79861 -12.49215 -11.94343 -11.70611 -11.56205 -11.42829 -11.32915 -11.18646 -11.16461 -11.08140 -10.89362 -10.74182 -10.69897 -10.57921 -10.23235 -10.08648 -9.96431 -9.71479 -9.50294 -8.92519 -8.40269 -7.36221 -6.02335 -4.05930 1.70198 2.70018 2.95149 3.30419 3.38110 3.42936 3.92214 4.09914 4.27170 4.30013 4.41505 4.70786 4.92319 4.97354 5.03338 5.18045 5.30214 5.34455 5.36569 5.43379 5.47355 5.49099 5.58637 5.71293 5.73890 5.80359 5.88704 5.95583 5.96027 6.16857 6.20962 6.36552 6.61125 6.76758 6.84906 7.02794 7.08721 7.35205 7.53527 7.65287 7.78305 8.01813 8.04041 8.31330 8.49816 8.98816 9.58814 11.04974 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020465 B = 0.004411 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.892800 B = 6345.618200 C = 6909.946152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.216 3.784 3 H 0.042 0.958 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.544 5.544 13 C 0.037 3.963 14 C 0.263 3.737 15 N -0.562 5.562 16 C 0.526 3.474 17 O -0.487 6.487 18 C -0.148 4.148 19 C -0.103 4.103 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.104 4.104 24 C 0.543 3.457 25 O -0.465 6.465 26 H 0.034 0.966 27 H 0.091 0.909 28 H 0.005 0.995 29 H 0.260 0.740 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.340 -2.007 -18.887 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.111 3.889 3 H 0.060 0.940 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.269 5.269 13 C -0.111 4.111 14 C 0.053 3.947 15 N -0.306 5.306 16 C 0.315 3.685 17 O -0.359 6.359 18 C -0.188 4.188 19 C -0.106 4.106 20 C -0.139 4.139 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.142 4.142 24 C 0.330 3.670 25 O -0.334 6.334 26 H 0.053 0.947 27 H 0.110 0.890 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.420 -1.791 -18.288 20.213 hybrid contribution -0.753 -0.377 0.956 1.274 sum 7.667 -2.168 -17.332 19.075 Atomic orbital electron populations 1.22451 1.00362 0.99726 1.00663 1.19340 0.89914 0.94521 0.85163 0.93972 1.21078 1.30603 1.12506 0.89413 0.91907 1.24915 0.95196 0.95127 0.99005 1.69890 1.37050 1.22994 1.23388 0.86433 0.78520 0.79630 0.82783 1.19772 1.21015 1.21144 1.62012 1.59678 1.03063 1.02132 1.22277 0.96571 0.91018 1.01246 1.22153 0.89091 0.98718 0.84788 1.47111 1.20178 1.33178 1.30115 1.20851 0.88209 0.78323 0.81164 1.90751 1.30430 1.43465 1.71279 1.22718 0.94078 1.01238 1.00747 1.21564 0.97039 0.96547 0.95485 1.22275 0.97897 0.97250 0.96463 1.22575 0.94189 0.97810 1.01647 1.22391 0.97885 0.96203 0.99317 1.22091 0.90826 0.99870 1.01398 1.20300 0.80576 0.81841 0.84307 1.90760 1.68840 1.26477 1.47318 0.94682 0.89019 0.97567 0.92994 0.93853 0.90703 0.95867 0.91859 0.88482 0.86349 0.86523 0.89986 0.90972 0.90576 0.91181 0.91154 0.91348 0.90316 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.26 37.15 0.31 -3.89 16 2 C 0.22 5.53 2.27 -68.86 -0.16 5.37 16 3 H 0.04 1.19 7.80 -51.93 -0.40 0.78 16 4 C -0.50 -13.79 7.91 -34.44 -0.27 -14.06 16 5 H 0.06 1.76 7.12 -52.48 -0.37 1.39 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.54 -12.15 4.80 -240.20 -1.15 -13.31 16 13 C 0.04 0.78 8.36 60.06 0.50 1.28 16 14 C 0.26 5.11 4.64 -63.32 -0.29 4.81 16 15 N -0.56 -9.28 2.78 -118.74 -0.33 -9.62 16 16 C 0.53 7.71 7.32 -10.90 -0.08 7.63 16 17 O -0.49 -8.47 16.07 5.60 0.09 -8.38 16 18 C -0.15 -1.41 6.30 -27.26 -0.17 -1.58 16 19 C -0.10 -1.10 0.90 -155.37 -0.14 -1.23 16 20 C -0.10 -0.86 5.90 -25.41 -0.15 -1.01 16 21 C -0.12 -1.03 6.92 -24.59 -0.17 -1.20 16 22 C -0.12 -0.94 6.85 -24.91 -0.17 -1.11 16 23 C -0.10 -1.01 6.17 -25.94 -0.16 -1.17 16 24 C 0.54 8.49 6.39 -11.37 -0.07 8.42 16 25 O -0.46 -8.90 17.50 5.60 0.10 -8.80 16 26 H 0.03 0.83 6.42 -51.93 -0.33 0.49 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 28 H 0.01 0.12 7.31 -51.93 -0.38 -0.26 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.04 0.85 6.07 -51.93 -0.32 0.54 16 31 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 32 H 0.02 0.48 6.38 -51.93 -0.33 0.15 16 33 H 0.06 1.21 7.26 -51.93 -0.38 0.83 16 34 H 0.10 1.94 7.33 -51.93 -0.38 1.56 16 35 H 0.12 0.93 7.19 -51.93 -0.37 0.56 16 36 H 0.12 0.81 7.43 -51.93 -0.39 0.42 16 37 H 0.08 0.50 7.55 -51.93 -0.39 0.10 16 38 H 0.07 0.68 7.83 -51.93 -0.41 0.27 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.96 7.73 -51.93 -0.40 0.56 16 44 H 0.08 0.62 7.16 -51.93 -0.37 0.25 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -31.73 341.10 -8.39 -40.12 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.72 Total: -0.59 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.12 Total: 3.79 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.86 Total: -47.85 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.19 Total: -17.18 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.73 -8.39 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.963 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds