Wall clock time and date at job start Tue Mar 31 2020 07:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46975 * 2 1 4 4 N 1.40080 * 126.03855 * 270.15434 * 3 2 1 5 5 C 1.30836 * 108.20867 * 180.23079 * 4 3 2 6 6 C 1.50695 * 125.90309 * 179.81600 * 5 4 3 7 7 C 1.39880 * 108.19611 * 359.77857 * 5 4 3 8 8 C 1.50706 * 126.03564 * 179.97438 * 7 5 4 9 9 C 1.50689 * 109.47334 * 270.02957 * 8 7 5 10 10 O 1.20826 * 120.00140 * 359.97438 * 9 8 7 11 11 O 1.34232 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.45202 * 117.00298 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.47263 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47235 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47125 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99847 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99660 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00250 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99858 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46948 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47308 * 120.00047 * 19 17 15 22 22 H 1.48504 * 109.47452 * 240.00434 * 19 17 15 23 23 C 1.34946 * 126.03491 * 89.99650 * 3 2 1 24 24 C 1.50703 * 126.12821 * 0.04077 * 23 3 2 25 25 H 1.09002 * 109.47268 * 60.00269 * 1 2 3 26 26 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47583 * 299.99398 * 1 2 3 28 28 H 1.08995 * 109.47583 * 240.00602 * 2 1 3 29 29 H 1.09002 * 109.47268 * 119.99731 * 2 1 3 30 30 H 1.09003 * 109.46956 * 269.95831 * 6 5 4 31 31 H 1.08999 * 109.47037 * 29.95728 * 6 5 4 32 32 H 1.09003 * 109.47071 * 149.95864 * 6 5 4 33 33 H 1.08997 * 109.46991 * 30.03182 * 8 7 5 34 34 H 1.08996 * 109.46546 * 150.02478 * 8 7 5 35 35 H 1.08999 * 109.46850 * 300.00018 * 12 11 9 36 36 H 1.09000 * 109.47070 * 59.99210 * 12 11 9 37 37 H 1.08999 * 109.47158 * 299.99775 * 13 12 11 38 38 H 1.09000 * 109.47767 * 59.99582 * 13 12 11 39 39 H 1.09008 * 109.46909 * 299.99261 * 14 13 12 40 40 H 1.08996 * 109.47551 * 59.99450 * 14 13 12 41 41 H 0.96996 * 119.99928 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47152 * 269.68605 * 24 23 3 43 43 H 1.09001 * 109.46980 * 149.68706 * 24 23 3 44 44 H 1.09004 * 109.47113 * 29.68687 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3316 -0.7321 6 6 3.1191 4.4760 -1.6236 7 6 2.7158 3.3394 0.6666 8 6 3.1307 4.4913 1.5454 9 6 4.6062 4.3956 1.8358 10 8 5.2545 3.4851 1.3767 11 8 5.2003 5.3212 2.6053 12 6 6.6244 5.1662 2.8424 13 6 7.1200 6.3062 3.7342 14 6 8.6207 6.1432 3.9835 15 6 9.1088 7.2659 4.8625 16 1 8.4177 8.0204 5.2084 17 6 10.4374 7.3297 5.2252 18 7 11.2788 6.4106 4.8044 19 14 11.0426 8.7216 6.3141 20 1 9.9066 9.6176 6.6492 21 1 11.6143 8.1595 7.5640 22 1 12.0876 9.4940 5.5954 23 6 2.2828 2.1298 1.0913 24 6 2.1297 1.6943 2.5258 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.1851 4.4056 -1.8400 31 1 2.5554 4.4296 -2.5553 32 1 2.9120 5.4204 -1.1202 33 1 2.9210 5.4314 1.0352 34 1 2.5730 4.4535 2.4811 35 1 6.8087 4.2124 3.3366 36 1 7.1559 5.1911 1.8911 37 1 6.9357 7.2603 3.2404 38 1 6.5884 6.2809 4.6855 39 1 8.8055 5.1891 4.4773 40 1 9.1520 6.1689 3.0322 41 1 12.2136 6.4557 5.0593 42 1 1.1255 1.9363 2.8738 43 1 2.8630 2.2131 3.1433 44 1 2.2898 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795810963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:09 Heat of formation + Delta-G solvation = -41.681123 kcal Electronic energy + Delta-G solvation = -23065.495160 eV Core-core repulsion = 19597.794381 eV Total energy + Delta-G solvation = -3467.700779 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64374 -39.93828 -36.40853 -35.26039 -33.95125 -33.22849 -31.89093 -31.56495 -29.60105 -27.57625 -27.16487 -26.16957 -23.54389 -22.99146 -21.05036 -20.31557 -19.66532 -19.44282 -17.37875 -16.89257 -16.43610 -16.25465 -15.73647 -15.35967 -14.88849 -14.50798 -14.45338 -13.93879 -13.56961 -13.51871 -13.43304 -13.27435 -12.93153 -12.70504 -12.40717 -12.39508 -12.17367 -12.07249 -11.96674 -11.79418 -11.70020 -11.63147 -10.96760 -10.62139 -10.60513 -10.56634 -10.31556 -10.23213 -9.68119 -9.48772 -9.17607 -9.13251 -8.45671 -8.37940 -6.02403 -4.05261 1.67975 2.26339 2.45506 2.50359 3.26503 3.30781 3.38275 3.42795 4.16438 4.37463 4.44720 4.57923 4.64016 4.69673 4.84019 4.91798 4.98383 5.15448 5.18583 5.20803 5.27802 5.31592 5.33599 5.42250 5.53050 5.57220 5.63242 5.65377 5.70244 5.77607 5.89538 6.01792 6.07101 6.52388 6.58002 6.62155 6.87448 6.92791 7.03634 7.61976 7.62529 7.73590 7.96274 8.10397 8.37830 9.01438 9.58987 11.09105 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034052 B = 0.002369 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.068599 B =11818.537125 C =12087.008272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.369 5.369 4 N -0.299 5.299 5 C 0.094 3.906 6 C -0.076 4.076 7 C -0.229 4.229 8 C -0.032 4.032 9 C 0.453 3.547 10 O -0.505 6.505 11 O -0.361 6.361 12 C 0.069 3.931 13 C -0.109 4.109 14 C 0.023 3.977 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.105 3.895 24 C -0.095 4.095 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.117 -10.540 -8.771 27.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.151 5.151 4 N -0.120 5.120 5 C -0.072 4.072 6 C -0.135 4.135 7 C -0.241 4.241 8 C -0.070 4.070 9 C 0.295 3.705 10 O -0.392 6.392 11 O -0.278 6.278 12 C -0.004 4.004 13 C -0.146 4.146 14 C -0.014 4.014 15 C -0.558 4.558 16 H 0.076 0.924 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.022 4.022 24 C -0.154 4.154 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.018 -11.767 -9.897 28.518 hybrid contribution 0.849 0.935 1.234 1.766 sum -23.170 -10.832 -8.663 27.004 Atomic orbital electron populations 1.22180 0.94302 1.02996 1.03210 1.21637 0.95109 0.78080 1.04418 1.48408 1.51762 1.11719 1.03228 1.77289 1.23639 1.03521 1.07569 1.22125 0.97647 0.94255 0.93222 1.20217 1.02168 0.93294 0.97797 1.18998 1.15663 0.96207 0.93184 1.19493 0.88877 0.98157 1.00516 1.23725 0.91225 0.79823 0.75762 1.90655 1.66144 1.33649 1.48770 1.86497 1.27468 1.50348 1.63508 1.23440 0.75083 1.01239 1.00630 1.21750 0.99791 0.95523 0.97556 1.19060 0.87456 0.97649 0.97240 1.21218 0.93912 1.10154 1.30511 0.92357 1.25042 0.96962 0.96222 0.96351 1.69977 1.03824 1.34163 1.45434 0.86492 0.78800 0.82163 0.80287 1.19655 1.21006 1.20988 1.20762 0.99249 0.91488 0.90748 1.20504 1.03484 1.02280 0.89089 0.91624 0.90534 0.92013 0.88734 0.89009 0.90251 0.90862 0.90399 0.87188 0.87526 0.91772 0.91689 0.92158 0.92196 0.96297 0.96259 0.92968 0.89947 0.89626 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.15 0.38 -0.57 16 2 C 0.13 0.95 6.96 -4.04 -0.03 0.92 16 3 N -0.37 -4.22 3.61 -57.14 -0.21 -4.42 16 4 N -0.30 -4.08 12.58 33.67 0.42 -3.66 16 5 C 0.09 1.22 7.22 -82.40 -0.59 0.62 16 6 C -0.08 -0.77 10.26 36.00 0.37 -0.40 16 7 C -0.23 -2.83 4.59 -105.05 -0.48 -3.31 16 8 C -0.03 -0.35 5.72 -29.04 -0.17 -0.51 16 9 C 0.45 6.94 7.95 36.00 0.29 7.22 16 10 O -0.50 -9.42 15.78 -18.75 -0.30 -9.72 16 11 O -0.36 -6.04 10.22 -39.26 -0.40 -6.44 16 12 C 0.07 1.30 5.47 37.15 0.20 1.50 16 13 C -0.11 -2.27 5.53 -26.74 -0.15 -2.42 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 C 0.11 1.18 6.93 -82.27 -0.57 0.61 16 24 C -0.10 -0.75 9.73 36.01 0.35 -0.40 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.50 7.04 -51.93 -0.37 0.14 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.64 7.26 -51.93 -0.38 0.26 16 33 H 0.11 0.98 7.26 -51.93 -0.38 0.60 16 34 H 0.11 0.91 7.77 -51.93 -0.40 0.51 16 35 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 36 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.73 7.78 -51.93 -0.40 0.32 16 44 H 0.07 0.47 7.07 -51.93 -0.37 0.10 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -35.08 372.53 -7.43 -42.51 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -7.33 Total: -4.43 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.95 Total: -9.79 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.95 Total: -34.34 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.70 Total: -16.16 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.08 -7.43 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795810963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.827 kcal (2) G-P(sol) polarization free energy of solvation -35.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds