Wall clock time and date at job start Tue Mar 31 2020 07:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46975 * 2 1 4 4 N 1.40080 * 126.03855 * 270.15434 * 3 2 1 5 5 C 1.30836 * 108.20867 * 180.23079 * 4 3 2 6 6 C 1.50695 * 125.90309 * 179.81600 * 5 4 3 7 7 C 1.39880 * 108.19611 * 359.77857 * 5 4 3 8 8 C 1.50706 * 126.03564 * 179.97438 * 7 5 4 9 9 C 1.50689 * 109.47334 * 270.02957 * 8 7 5 10 10 O 1.20826 * 120.00140 * 359.97438 * 9 8 7 11 11 O 1.34232 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.45202 * 117.00298 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.47263 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47235 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47125 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99847 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99660 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00250 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99858 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46948 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47308 * 120.00047 * 19 17 15 22 22 H 1.48504 * 109.47452 * 240.00434 * 19 17 15 23 23 C 1.34946 * 126.03491 * 89.99650 * 3 2 1 24 24 C 1.50703 * 126.12821 * 0.04077 * 23 3 2 25 25 H 1.09002 * 109.47268 * 60.00269 * 1 2 3 26 26 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47583 * 299.99398 * 1 2 3 28 28 H 1.08995 * 109.47583 * 240.00602 * 2 1 3 29 29 H 1.09002 * 109.47268 * 119.99731 * 2 1 3 30 30 H 1.09003 * 109.46956 * 269.95831 * 6 5 4 31 31 H 1.08999 * 109.47037 * 29.95728 * 6 5 4 32 32 H 1.09003 * 109.47071 * 149.95864 * 6 5 4 33 33 H 1.08997 * 109.46991 * 30.03182 * 8 7 5 34 34 H 1.08996 * 109.46546 * 150.02478 * 8 7 5 35 35 H 1.08999 * 109.46850 * 300.00018 * 12 11 9 36 36 H 1.09000 * 109.47070 * 59.99210 * 12 11 9 37 37 H 1.08999 * 109.47158 * 299.99775 * 13 12 11 38 38 H 1.09000 * 109.47767 * 59.99582 * 13 12 11 39 39 H 1.09008 * 109.46909 * 299.99261 * 14 13 12 40 40 H 1.08996 * 109.47551 * 59.99450 * 14 13 12 41 41 H 0.96996 * 119.99928 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47152 * 269.68605 * 24 23 3 43 43 H 1.09001 * 109.46980 * 149.68706 * 24 23 3 44 44 H 1.09004 * 109.47113 * 29.68687 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3316 -0.7321 6 6 3.1191 4.4760 -1.6236 7 6 2.7158 3.3394 0.6666 8 6 3.1307 4.4913 1.5454 9 6 4.6062 4.3956 1.8358 10 8 5.2545 3.4851 1.3767 11 8 5.2003 5.3212 2.6053 12 6 6.6244 5.1662 2.8424 13 6 7.1200 6.3062 3.7342 14 6 8.6207 6.1432 3.9835 15 6 9.1088 7.2659 4.8625 16 1 8.4177 8.0204 5.2084 17 6 10.4374 7.3297 5.2252 18 7 11.2788 6.4106 4.8044 19 14 11.0426 8.7216 6.3141 20 1 9.9066 9.6176 6.6492 21 1 11.6143 8.1595 7.5640 22 1 12.0876 9.4940 5.5954 23 6 2.2828 2.1298 1.0913 24 6 2.1297 1.6943 2.5258 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.1851 4.4056 -1.8400 31 1 2.5554 4.4296 -2.5553 32 1 2.9120 5.4204 -1.1202 33 1 2.9210 5.4314 1.0352 34 1 2.5730 4.4535 2.4811 35 1 6.8087 4.2124 3.3366 36 1 7.1559 5.1911 1.8911 37 1 6.9357 7.2603 3.2404 38 1 6.5884 6.2809 4.6855 39 1 8.8055 5.1891 4.4773 40 1 9.1520 6.1689 3.0322 41 1 12.2136 6.4557 5.0593 42 1 1.1255 1.9363 2.8738 43 1 2.8630 2.2131 3.1433 44 1 2.2898 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795810963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:07 Heat of formation + Delta-G solvation = -61.831798 kcal Electronic energy + Delta-G solvation = -23066.368959 eV Core-core repulsion = 19597.794381 eV Total energy + Delta-G solvation = -3468.574578 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.49642 -41.22414 -37.78978 -36.00029 -35.89775 -34.10614 -33.62360 -32.47241 -30.45233 -28.97379 -28.22475 -27.17630 -25.18592 -23.86781 -22.24040 -22.12943 -20.52906 -20.30683 -18.76500 -18.38574 -17.77282 -17.54282 -16.96432 -16.47874 -16.22994 -15.79620 -15.49566 -14.97713 -14.63281 -14.31921 -14.26869 -14.14828 -14.02391 -13.86324 -13.76770 -13.64318 -13.28224 -13.04653 -12.95872 -12.83082 -12.68348 -12.57260 -12.48123 -12.31912 -12.17253 -12.02918 -11.73623 -11.45002 -11.36876 -11.36143 -11.18327 -10.57367 -10.01537 -9.31880 -8.21015 -6.32503 0.84649 1.29391 1.40959 1.42715 1.43450 1.56645 1.58955 2.10146 2.42852 3.12911 3.47451 3.67846 3.83879 3.97369 4.02573 4.07669 4.08881 4.11436 4.19884 4.29579 4.32297 4.45189 4.54692 4.62890 4.67397 4.74457 4.75795 4.79255 4.82553 4.93840 4.97522 5.03921 5.09830 5.10733 5.17703 5.24810 5.46766 5.59310 5.65302 5.73947 5.81495 6.14716 6.20290 6.75630 6.82441 6.86307 7.37110 8.91488 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034052 B = 0.002369 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.068599 B =11818.537125 C =12087.008272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 N -0.373 5.373 4 N -0.336 5.336 5 C 0.076 3.924 6 C -0.076 4.076 7 C -0.255 4.255 8 C -0.021 4.021 9 C 0.454 3.546 10 O -0.542 6.542 11 O -0.357 6.357 12 C 0.079 3.921 13 C -0.093 4.093 14 C 0.025 3.975 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.258 1.258 21 H -0.279 1.279 22 H -0.279 1.279 23 C 0.103 3.897 24 C -0.094 4.094 25 H 0.046 0.954 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.069 0.931 39 H -0.005 1.005 40 H -0.006 1.006 41 H 0.264 0.736 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.006 -9.866 -7.475 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.002 4.002 3 N -0.155 5.155 4 N -0.158 5.158 5 C -0.090 4.090 6 C -0.134 4.134 7 C -0.266 4.266 8 C -0.059 4.059 9 C 0.299 3.701 10 O -0.432 6.432 11 O -0.274 6.274 12 C 0.006 3.994 13 C -0.130 4.130 14 C -0.013 4.013 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.182 1.182 21 H -0.204 1.204 22 H -0.205 1.205 23 C -0.026 4.026 24 C -0.152 4.152 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.014 0.986 40 H 0.013 0.987 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.941 -11.096 -8.613 29.500 hybrid contribution 1.392 0.609 0.783 1.709 sum -24.549 -10.488 -7.830 27.820 Atomic orbital electron populations 1.22112 0.92827 1.04350 1.02411 1.21998 0.96335 0.76531 1.05383 1.48771 1.51260 1.12643 1.02793 1.77209 1.25031 1.04337 1.09252 1.22585 0.97538 0.94637 0.94202 1.20290 1.01427 0.93522 0.98195 1.19259 1.16918 0.97329 0.93143 1.19639 0.85327 0.98915 1.02031 1.24692 0.92660 0.78536 0.74226 1.90648 1.67277 1.35103 1.50141 1.86494 1.25805 1.51008 1.64091 1.23041 0.76713 1.00000 0.99684 1.21445 0.96393 0.96622 0.98587 1.18949 0.90806 0.96078 0.95424 1.21662 0.94519 1.10816 1.30794 0.91506 1.26043 0.97236 0.99006 0.97867 1.70114 1.04295 1.36271 1.46864 0.85319 0.78450 0.78707 0.78083 1.18204 1.20430 1.20492 1.21354 0.97898 0.91252 0.92101 1.20635 1.04826 1.03078 0.86709 0.93457 0.88073 0.91660 0.89013 0.86829 0.91399 0.90057 0.88400 0.84736 0.84488 0.92343 0.92535 0.91390 0.91258 0.98637 0.98726 0.92727 0.87292 0.90247 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.24 71.98 0.74 -0.80 16 2 C 0.12 1.59 6.96 86.38 0.60 2.19 16 3 N -0.37 -8.24 3.61 -334.69 -1.21 -9.45 16 4 N -0.34 -9.25 12.58 -47.38 -0.60 -9.84 16 5 C 0.08 1.95 7.22 43.10 0.31 2.26 16 6 C -0.08 -1.51 10.26 71.23 0.73 -0.78 16 7 C -0.26 -5.99 4.59 -20.14 -0.09 -6.08 16 8 C -0.02 -0.42 5.72 29.10 0.17 -0.25 16 9 C 0.45 13.42 7.95 71.23 0.57 13.99 16 10 O -0.54 -20.27 15.78 21.96 0.35 -19.93 16 11 O -0.36 -11.47 10.22 -51.44 -0.53 -11.99 16 12 C 0.08 2.99 5.47 71.98 0.39 3.38 16 13 C -0.09 -3.85 5.53 30.59 0.17 -3.69 16 14 C 0.02 1.31 4.97 29.85 0.15 1.46 16 15 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 18 N -0.94 -57.27 13.29 21.45 0.28 -56.99 16 19 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 C 0.10 2.16 6.93 41.40 0.29 2.45 16 24 C -0.09 -1.24 9.73 71.24 0.69 -0.55 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.11 1.00 7.04 -2.39 -0.02 0.99 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 1.47 7.26 -2.39 -0.02 1.45 16 33 H 0.13 1.99 7.26 -2.39 -0.02 1.98 16 34 H 0.14 1.87 7.77 -2.39 -0.02 1.85 16 35 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 36 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 37 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 1.17 7.78 -2.39 -0.02 1.15 16 44 H 0.09 0.88 7.07 -2.38 -0.02 0.87 16 Total: -1.00 -77.03 372.53 6.70 -70.32 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.97 Total: 8.34 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 5.41 Total: -16.54 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -1.52 Total: -76.28 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.18 Total: -31.92 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -77.03 6.70 -70.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795810963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.492 kcal (2) G-P(sol) polarization free energy of solvation -77.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds