Wall clock time and date at job start Tue Mar 31 2020 07:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 O 1.20822 * 120.00374 * 0.02562 * 5 4 2 7 7 O 1.34231 * 120.00048 * 179.97438 * 5 4 2 8 8 C 1.45195 * 116.99986 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46864 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47181 * 299.99731 * 9 8 7 11 11 C 1.53000 * 109.47337 * 60.00059 * 9 8 7 12 12 C 1.53002 * 109.47168 * 180.02562 * 9 8 7 13 13 C 1.50702 * 109.47326 * 179.97438 * 12 9 8 14 14 H 1.08000 * 119.99608 * 0.02562 * 13 12 9 15 15 C 1.37873 * 120.00055 * 179.97438 * 13 12 9 16 16 N 1.31518 * 119.99841 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99950 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46874 * 60.00464 * 17 15 13 19 19 H 1.48498 * 109.46998 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47073 * 300.00472 * 17 15 13 21 21 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 22 22 C 1.34950 * 126.04099 * 34.71284 * 21 2 1 23 23 C 1.35315 * 107.74423 * 179.83807 * 22 21 2 24 24 C 1.39871 * 107.92375 * 0.42973 * 23 22 21 25 25 N 1.30831 * 108.19955 * 359.73088 * 24 23 22 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 1.09000 * 109.47354 * 299.99613 * 8 7 5 32 32 H 1.09000 * 109.47584 * 60.00336 * 8 7 5 33 33 H 1.08998 * 109.47312 * 60.00024 * 10 9 8 34 34 H 1.08997 * 109.47546 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.47119 * 300.00418 * 10 9 8 36 36 H 1.08997 * 109.46960 * 59.99778 * 11 9 8 37 37 H 1.08997 * 109.47273 * 180.02562 * 11 9 8 38 38 H 1.08998 * 109.46671 * 299.99678 * 11 9 8 39 39 H 1.09010 * 109.46671 * 299.99760 * 12 9 8 40 40 H 1.09000 * 109.47148 * 59.99572 * 12 9 8 41 41 H 0.97004 * 119.99290 * 179.97438 * 16 15 13 42 42 H 1.07998 * 126.12520 * 0.02562 * 22 21 2 43 43 H 1.07999 * 126.03675 * 180.16099 * 23 22 21 44 44 H 1.07996 * 125.89659 * 179.71517 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0142 1.0835 -2.3637 7 8 1.9840 -0.3896 -3.6951 8 6 1.5669 0.4114 -4.8321 9 6 2.0443 -0.2518 -6.1257 10 6 3.5703 -0.3599 -6.1104 11 6 1.4350 -1.6509 -6.2365 12 6 1.6053 0.5926 -7.3237 13 6 2.0760 -0.0603 -8.5978 14 1 2.6322 -0.9852 -8.5571 15 6 1.7957 0.5226 -9.8154 16 7 1.1180 1.6486 -9.8650 17 14 2.3798 -0.2863 -11.3947 18 1 1.7893 -1.6446 -11.5029 19 1 1.9536 0.5332 -12.5575 20 1 3.8610 -0.3902 -11.3792 21 7 2.0183 -0.6906 1.1962 22 6 1.4372 -1.7526 1.7927 23 6 2.1966 -2.0928 2.8597 24 6 3.2734 -1.2024 2.9231 25 7 3.1676 -0.3615 1.9264 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 0.4797 0.4880 -4.8433 32 1 2.0006 1.4082 -4.7530 33 1 3.8835 -0.9611 -5.2568 34 1 3.9104 -0.8327 -7.0317 35 1 4.0044 0.6369 -6.0314 36 1 0.3478 -1.5738 -6.2474 37 1 1.7754 -2.1235 -7.1578 38 1 1.7481 -2.2521 -5.3830 39 1 0.5180 0.6699 -7.3348 40 1 2.0397 1.5891 -7.2445 41 1 0.9211 2.0588 -10.7217 42 1 0.5304 -2.2447 1.4736 43 1 2.0028 -2.9053 3.5443 44 1 4.0567 -1.2080 3.6666 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820966078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:55 Heat of formation + Delta-G solvation = -28.657502 kcal Electronic energy + Delta-G solvation = -23453.342202 eV Core-core repulsion = 19986.206169 eV Total energy + Delta-G solvation = -3467.136033 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.51464 -40.44949 -37.58681 -35.88103 -35.27480 -32.37759 -30.74981 -30.12141 -28.73193 -27.22839 -26.45768 -26.31400 -23.96057 -22.95067 -21.32235 -21.05301 -19.98041 -18.31242 -18.04900 -16.92320 -16.59317 -16.38067 -16.05943 -15.10812 -14.99548 -14.59445 -14.39269 -13.82995 -13.78569 -13.40770 -13.26006 -13.04291 -12.98324 -12.65479 -12.35721 -12.08623 -12.06174 -11.83841 -11.58532 -11.30294 -10.98650 -10.92410 -10.88455 -10.63902 -10.55866 -10.37059 -10.34128 -10.25373 -9.78948 -9.71100 -9.26116 -8.99742 -8.87892 -8.39442 -6.03806 -4.05187 1.61969 2.05006 2.18387 2.61371 2.93448 3.30687 3.35791 3.37624 4.08194 4.25496 4.41983 4.54722 4.65404 4.71029 4.90457 5.03222 5.11258 5.31611 5.34033 5.39490 5.41611 5.43829 5.45286 5.59187 5.75482 5.75715 5.81604 5.98685 6.13540 6.32339 6.39398 6.46157 6.56363 6.66457 6.71798 6.76964 7.06301 7.06983 7.09062 7.46784 7.56425 7.68126 7.78932 7.94383 8.35958 8.98800 9.58037 11.07756 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040923 B = 0.002530 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.051898 B =11064.998681 C =11297.764256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.172 3.828 3 H 0.114 0.886 4 C -0.129 4.129 5 C 0.465 3.535 6 O -0.511 6.511 7 O -0.347 6.347 8 C 0.079 3.921 9 C -0.059 4.059 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.035 3.965 13 C -0.511 4.511 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 N -0.367 5.367 22 C 0.056 3.944 23 C -0.277 4.277 24 C 0.043 3.957 25 N -0.296 5.296 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.261 0.739 42 H 0.172 0.828 43 H 0.146 0.854 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 -7.683 22.822 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.071 3.929 3 H 0.132 0.868 4 C -0.168 4.168 5 C 0.307 3.693 6 O -0.400 6.400 7 O -0.263 6.263 8 C 0.006 3.994 9 C -0.059 4.059 10 C -0.184 4.184 11 C -0.183 4.183 12 C -0.002 4.002 13 C -0.549 4.549 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 N -0.150 5.150 22 C -0.090 4.090 23 C -0.306 4.306 24 C -0.143 4.143 25 N -0.117 5.117 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.190 0.810 43 H 0.164 0.836 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.403 -6.154 21.959 22.809 hybrid contribution -0.172 -0.976 -0.552 1.134 sum 0.231 -7.130 21.407 22.564 Atomic orbital electron populations 1.22357 0.91923 1.03310 1.05293 1.20969 0.95454 0.97036 0.79484 0.86838 1.21735 1.05057 1.00585 0.89410 1.23067 0.76618 0.84101 0.85498 1.90651 1.37565 1.24407 1.87396 1.86489 1.71742 1.53155 1.14891 1.23562 0.99745 0.93828 0.82242 1.20823 0.96073 0.96905 0.92081 1.21721 0.94821 1.00759 1.01067 1.21716 0.99705 0.95845 1.01048 1.19128 0.96665 0.94375 0.90040 1.21102 1.35008 1.08352 0.90430 0.92136 1.25016 0.95312 0.94999 0.99181 1.69957 1.39809 1.18126 1.25575 0.86668 0.79158 0.79339 0.82907 1.20256 1.21370 1.20253 1.48886 1.19428 1.24364 1.22278 1.22544 0.99854 0.91185 0.95383 1.21524 0.99237 1.06506 1.03371 1.23915 0.99321 0.93835 0.97246 1.77416 1.02848 1.23786 1.07615 0.91273 0.87980 0.91781 0.86904 0.87165 0.91460 0.91452 0.94250 0.91509 0.93730 0.93751 0.91514 0.94258 0.96341 0.96328 0.92931 0.81040 0.83580 0.80079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 8.57 37.16 0.32 -1.11 16 2 C 0.17 1.68 3.05 -67.93 -0.21 1.47 16 3 H 0.11 1.26 7.96 -51.93 -0.41 0.85 16 4 C -0.13 -1.27 5.61 -27.88 -0.16 -1.42 16 5 C 0.46 6.25 7.67 36.01 0.28 6.53 16 6 O -0.51 -7.93 13.72 -18.75 -0.26 -8.19 16 7 O -0.35 -5.36 8.88 -39.26 -0.35 -5.71 16 8 C 0.08 1.40 4.32 37.16 0.16 1.56 16 9 C -0.06 -1.15 0.61 -154.51 -0.09 -1.25 16 10 C -0.13 -2.36 8.08 37.16 0.30 -2.06 16 11 C -0.13 -2.32 8.08 37.16 0.30 -2.02 16 12 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 13 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 14 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 N -0.37 -3.72 3.53 -54.86 -0.19 -3.92 16 22 C 0.06 0.46 10.59 -17.22 -0.18 0.28 16 23 C -0.28 -2.23 10.80 -40.01 -0.43 -2.66 16 24 C 0.04 0.39 12.03 -17.37 -0.21 0.19 16 25 N -0.30 -3.48 12.58 30.62 0.39 -3.09 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 1.04 5.96 -51.93 -0.31 0.73 16 28 H 0.06 0.42 7.15 -51.93 -0.37 0.04 16 29 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 32 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 33 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 34 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 38 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 39 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 42 H 0.17 0.89 7.26 -52.49 -0.38 0.51 16 43 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -31.27 359.69 -6.72 -37.99 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.04 Total: -0.96 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.40 Total: -12.14 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.93 Total: -32.55 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.61 Total: -13.90 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.27 -6.72 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820966078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.334 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds