Wall clock time and date at job start Tue Mar 31 2020 07:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 O 1.20822 * 120.00374 * 0.02562 * 5 4 2 7 7 O 1.34231 * 120.00048 * 179.97438 * 5 4 2 8 8 C 1.45195 * 116.99986 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46864 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47181 * 299.99731 * 9 8 7 11 11 C 1.53000 * 109.47337 * 60.00059 * 9 8 7 12 12 C 1.53002 * 109.47168 * 180.02562 * 9 8 7 13 13 C 1.50702 * 109.47326 * 179.97438 * 12 9 8 14 14 H 1.08000 * 119.99608 * 0.02562 * 13 12 9 15 15 C 1.37873 * 120.00055 * 179.97438 * 13 12 9 16 16 N 1.31518 * 119.99841 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99950 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46874 * 60.00464 * 17 15 13 19 19 H 1.48498 * 109.46998 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47073 * 300.00472 * 17 15 13 21 21 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 22 22 C 1.34950 * 126.04099 * 34.71284 * 21 2 1 23 23 C 1.35315 * 107.74423 * 179.83807 * 22 21 2 24 24 C 1.39871 * 107.92375 * 0.42973 * 23 22 21 25 25 N 1.30831 * 108.19955 * 359.73088 * 24 23 22 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 1.09000 * 109.47354 * 299.99613 * 8 7 5 32 32 H 1.09000 * 109.47584 * 60.00336 * 8 7 5 33 33 H 1.08998 * 109.47312 * 60.00024 * 10 9 8 34 34 H 1.08997 * 109.47546 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.47119 * 300.00418 * 10 9 8 36 36 H 1.08997 * 109.46960 * 59.99778 * 11 9 8 37 37 H 1.08997 * 109.47273 * 180.02562 * 11 9 8 38 38 H 1.08998 * 109.46671 * 299.99678 * 11 9 8 39 39 H 1.09010 * 109.46671 * 299.99760 * 12 9 8 40 40 H 1.09000 * 109.47148 * 59.99572 * 12 9 8 41 41 H 0.97004 * 119.99290 * 179.97438 * 16 15 13 42 42 H 1.07998 * 126.12520 * 0.02562 * 22 21 2 43 43 H 1.07999 * 126.03675 * 180.16099 * 23 22 21 44 44 H 1.07996 * 125.89659 * 179.71517 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0142 1.0835 -2.3637 7 8 1.9840 -0.3896 -3.6951 8 6 1.5669 0.4114 -4.8321 9 6 2.0443 -0.2518 -6.1257 10 6 3.5703 -0.3599 -6.1104 11 6 1.4350 -1.6509 -6.2365 12 6 1.6053 0.5926 -7.3237 13 6 2.0760 -0.0603 -8.5978 14 1 2.6322 -0.9852 -8.5571 15 6 1.7957 0.5226 -9.8154 16 7 1.1180 1.6486 -9.8650 17 14 2.3798 -0.2863 -11.3947 18 1 1.7893 -1.6446 -11.5029 19 1 1.9536 0.5332 -12.5575 20 1 3.8610 -0.3902 -11.3792 21 7 2.0183 -0.6906 1.1962 22 6 1.4372 -1.7526 1.7927 23 6 2.1966 -2.0928 2.8597 24 6 3.2734 -1.2024 2.9231 25 7 3.1676 -0.3615 1.9264 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 0.4797 0.4880 -4.8433 32 1 2.0006 1.4082 -4.7530 33 1 3.8835 -0.9611 -5.2568 34 1 3.9104 -0.8327 -7.0317 35 1 4.0044 0.6369 -6.0314 36 1 0.3478 -1.5738 -6.2474 37 1 1.7754 -2.1235 -7.1578 38 1 1.7481 -2.2521 -5.3830 39 1 0.5180 0.6699 -7.3348 40 1 2.0397 1.5891 -7.2445 41 1 0.9211 2.0588 -10.7217 42 1 0.5304 -2.2447 1.4736 43 1 2.0028 -2.9053 3.5443 44 1 4.0567 -1.2080 3.6666 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820966078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:54 Heat of formation + Delta-G solvation = -45.437354 kcal Electronic energy + Delta-G solvation = -23454.069830 eV Core-core repulsion = 19986.206169 eV Total energy + Delta-G solvation = -3467.863662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.22724 -41.57088 -38.96534 -37.15315 -36.30434 -34.41783 -31.51110 -30.78677 -29.67435 -29.04607 -27.96895 -27.70152 -25.21723 -24.39051 -22.13074 -21.95648 -20.73761 -19.91334 -19.01766 -18.36374 -17.81657 -17.68107 -17.24416 -16.51685 -15.98395 -15.81549 -15.44788 -15.10557 -14.82786 -14.70452 -14.31416 -14.14733 -13.97805 -13.90339 -13.67390 -13.51174 -13.09545 -12.84267 -12.77442 -12.64756 -12.57355 -12.32103 -12.30543 -12.23763 -12.00032 -11.84310 -11.65862 -11.54065 -11.36558 -11.04257 -10.91420 -10.52337 -10.41534 -9.52118 -8.16158 -6.23865 0.95391 1.09259 1.26717 1.42579 1.44480 1.51812 1.91206 2.00476 2.43848 3.18407 3.31970 3.50596 3.68597 3.91786 3.93139 3.97347 4.05723 4.12859 4.21837 4.35505 4.42962 4.51460 4.59275 4.68694 4.72756 4.76321 4.80550 4.95401 5.00417 5.07559 5.12632 5.14449 5.20660 5.41776 5.45073 5.46125 5.51593 5.52716 5.73824 5.78223 5.86804 6.14083 6.27550 6.64666 6.81104 6.89757 7.43747 8.96153 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040923 B = 0.002530 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.051898 B =11064.998681 C =11297.764256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.090 0.910 4 C -0.115 4.115 5 C 0.465 3.535 6 O -0.533 6.533 7 O -0.346 6.346 8 C 0.090 3.910 9 C -0.055 4.055 10 C -0.121 4.121 11 C -0.119 4.119 12 C 0.039 3.961 13 C -0.515 4.515 14 H 0.071 0.929 15 C -0.003 4.003 16 N -0.937 5.937 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.290 1.290 20 H -0.268 1.268 21 N -0.376 5.376 22 C 0.056 3.944 23 C -0.283 4.283 24 C 0.039 3.961 25 N -0.345 5.345 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.139 0.861 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.067 0.933 39 H -0.008 1.008 40 H -0.011 1.011 41 H 0.261 0.739 42 H 0.204 0.796 43 H 0.170 0.830 44 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 -10.406 24.160 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.073 3.927 3 H 0.109 0.891 4 C -0.154 4.154 5 C 0.309 3.691 6 O -0.424 6.424 7 O -0.261 6.261 8 C 0.016 3.984 9 C -0.056 4.056 10 C -0.178 4.178 11 C -0.176 4.176 12 C 0.002 3.998 13 C -0.553 4.553 14 H 0.089 0.911 15 C -0.201 4.201 16 N -0.578 5.578 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.215 1.215 20 H -0.193 1.193 21 N -0.159 5.159 22 C -0.089 4.089 23 C -0.311 4.311 24 C -0.147 4.147 25 N -0.166 5.166 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.134 0.866 30 H 0.157 0.843 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.010 0.990 40 H 0.007 0.993 41 H 0.069 0.931 42 H 0.220 0.780 43 H 0.188 0.812 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.781 -8.897 23.324 24.976 hybrid contribution -0.296 -0.116 -0.833 0.891 sum 0.485 -9.014 22.492 24.235 Atomic orbital electron populations 1.22284 0.90836 1.04703 1.04393 1.20838 0.96181 0.95966 0.79674 0.89150 1.21753 1.05339 1.01121 0.87147 1.23779 0.75763 0.84015 0.85515 1.90659 1.38616 1.25606 1.87480 1.86467 1.71968 1.52653 1.15049 1.23137 0.99224 0.93335 0.82692 1.20627 0.96996 0.96911 0.91017 1.21654 0.93727 1.00769 1.01622 1.21643 0.99409 0.94935 1.01655 1.18991 0.94680 0.93838 0.92259 1.21502 1.34215 1.08462 0.91152 0.91095 1.25932 0.95595 0.95576 1.02951 1.70106 1.41532 1.19860 1.26298 0.85584 0.78999 0.78551 0.78437 1.19080 1.21541 1.19265 1.48861 1.19537 1.25132 1.22380 1.23140 1.00526 0.90280 0.94997 1.21896 0.98675 1.06831 1.03746 1.24442 1.00096 0.93303 0.96862 1.77377 1.04390 1.25653 1.09200 0.91058 0.89930 0.89219 0.86553 0.84338 0.91959 0.92550 0.91558 0.92618 0.94429 0.94054 0.92707 0.91397 0.99008 0.99280 0.93068 0.77974 0.81247 0.77921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.57 71.98 0.62 -1.86 16 2 C 0.18 3.21 3.05 44.99 0.14 3.35 16 3 H 0.09 2.05 7.96 -2.39 -0.02 2.03 16 4 C -0.12 -2.02 5.61 29.85 0.17 -1.85 16 5 C 0.47 11.97 7.67 71.24 0.55 12.52 16 6 O -0.53 -16.55 13.72 21.98 0.30 -16.25 16 7 O -0.35 -10.12 8.88 -51.43 -0.46 -10.58 16 8 C 0.09 3.18 4.32 71.98 0.31 3.49 16 9 C -0.06 -2.16 0.61 -52.18 -0.03 -2.20 16 10 C -0.12 -4.38 8.08 71.98 0.58 -3.80 16 11 C -0.12 -4.21 8.08 71.98 0.58 -3.63 16 12 C 0.04 2.00 4.04 29.85 0.12 2.12 16 13 C -0.52 -27.67 7.65 25.60 0.20 -27.47 16 14 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.94 -56.45 13.29 21.45 0.28 -56.16 16 17 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 N -0.38 -6.97 3.53 -327.49 -1.16 -8.13 16 22 C 0.06 0.74 10.59 83.54 0.88 1.63 16 23 C -0.28 -3.75 10.80 21.99 0.24 -3.51 16 24 C 0.04 0.64 12.03 85.24 1.03 1.67 16 25 N -0.35 -7.78 12.58 -57.03 -0.72 -8.50 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.62 5.96 -2.39 -0.01 1.61 16 28 H 0.09 0.87 7.15 -2.39 -0.02 0.85 16 29 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 32 H 0.06 2.10 8.13 -2.39 -0.02 2.08 16 33 H 0.07 2.04 7.68 -2.39 -0.02 2.02 16 34 H 0.05 2.13 6.62 -2.39 -0.02 2.11 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 2.05 6.62 -2.39 -0.02 2.04 16 38 H 0.07 2.01 7.68 -2.39 -0.02 1.99 16 39 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16 41 H 0.26 14.93 8.31 -92.71 -0.77 14.15 16 42 H 0.20 1.22 7.26 -2.91 -0.02 1.20 16 43 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -69.00 359.69 7.09 -61.91 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.97 Total: 11.53 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 5.84 Total: -19.29 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.59 Total: -72.79 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.16 Total: -26.82 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -69.00 7.09 -61.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820966078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.473 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds