Wall clock time and date at job start Tue Mar 31 2020 07:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46666 * 2 1 4 4 C 1.52997 * 109.47050 * 240.00272 * 2 1 3 5 5 C 1.50708 * 109.47127 * 175.00022 * 4 2 1 6 6 C 1.34506 * 125.79179 * 90.01288 * 5 4 2 7 7 C 1.41388 * 106.83998 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.83843 * 359.97438 * 7 6 5 9 9 O 1.34304 * 108.42331 * 0.02562 * 8 7 6 10 10 N 1.46499 * 109.47391 * 119.99461 * 2 1 3 11 11 C 1.34769 * 120.00448 * 275.00355 * 10 2 1 12 12 O 1.21588 * 119.99797 * 0.02562 * 11 10 2 13 13 N 1.34770 * 120.00265 * 179.97438 * 11 10 2 14 14 C 1.46506 * 120.00302 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47216 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47161 * 300.00021 * 15 14 13 17 17 C 1.53001 * 109.46991 * 60.00118 * 15 14 13 18 18 C 1.50702 * 109.46920 * 180.02562 * 15 14 13 19 19 H 1.07995 * 119.99871 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99884 * 180.02562 * 18 15 14 21 21 N 1.31509 * 119.99839 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 119.99739 * 179.97438 * 20 18 15 23 23 H 1.48493 * 109.47110 * 60.00194 * 22 20 18 24 24 H 1.48504 * 109.46702 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47369 * 300.00040 * 22 20 18 26 26 H 1.09003 * 109.47621 * 60.00459 * 1 2 3 27 27 H 1.09005 * 109.46666 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47404 * 299.99567 * 1 2 3 29 29 H 1.08998 * 109.47369 * 54.99474 * 4 2 1 30 30 H 1.09005 * 109.46999 * 294.99290 * 4 2 1 31 31 H 1.08000 * 126.58117 * 359.96027 * 6 5 4 32 32 H 1.08001 * 126.57691 * 180.26094 * 7 6 5 33 33 H 1.07998 * 125.78442 * 180.02562 * 8 7 6 34 34 H 0.97003 * 119.99551 * 95.00447 * 10 2 1 35 35 H 0.96998 * 120.00229 * 0.02562 * 13 11 10 36 36 H 1.09003 * 109.46994 * 300.00310 * 14 13 11 37 37 H 1.09003 * 109.46521 * 60.00157 * 14 13 11 38 38 H 1.08995 * 109.46698 * 59.99991 * 16 15 14 39 39 H 1.08993 * 109.46889 * 180.02562 * 16 15 14 40 40 H 1.08998 * 109.46941 * 299.99927 * 16 15 14 41 41 H 1.08996 * 109.46837 * 59.99714 * 17 15 14 42 42 H 1.09002 * 109.46864 * 179.97438 * 17 15 14 43 43 H 1.08996 * 109.46961 * 299.99588 * 17 15 14 44 44 H 0.97003 * 120.00340 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 6 4.4156 -1.4849 -0.7752 7 6 5.7105 -1.0013 -1.0723 8 6 5.5507 0.1351 -1.7740 9 8 4.2350 0.3644 -1.9165 10 7 2.0184 -0.6905 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8574 1.1614 2.4118 13 7 2.5959 -0.6535 3.4576 14 6 2.7363 0.0775 4.7195 15 6 3.2607 -0.8688 5.8015 16 6 2.2762 -2.0249 5.9887 17 6 4.6229 -1.4223 5.3784 18 6 3.4045 -0.1169 7.0996 19 1 3.1481 0.9310 7.1479 20 6 3.8646 -0.7667 8.2253 21 7 4.1774 -2.0427 8.1662 22 14 4.0436 0.1654 9.8341 23 1 2.7214 0.7021 10.2449 24 1 4.5524 -0.7531 10.8843 25 1 4.9987 1.2879 9.6523 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2056 31 1 4.1742 -2.3809 -0.2226 32 1 6.6481 -1.4592 -0.7936 33 1 6.3455 0.7574 -2.1578 34 1 2.2491 -1.6317 1.1526 35 1 2.8266 -1.5946 3.4142 36 1 3.4380 0.9009 4.5862 37 1 1.7659 0.4722 5.0206 38 1 2.1718 -2.5687 5.0499 39 1 2.6495 -2.6987 6.7598 40 1 1.3058 -1.6306 6.2901 41 1 5.3242 -0.5986 5.2450 42 1 4.9966 -2.0960 6.1494 43 1 4.5184 -1.9662 4.4396 44 1 4.5014 -2.4999 8.9580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837557447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:11 Heat of formation + Delta-G solvation = -29.041212 kcal Electronic energy + Delta-G solvation = -24092.320849 eV Core-core repulsion = 20625.168178 eV Total energy + Delta-G solvation = -3467.152672 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.63270 -39.66229 -36.92823 -35.76934 -33.24487 -33.03488 -31.90596 -30.68742 -29.70479 -26.38112 -25.69023 -25.53648 -24.75593 -21.90424 -21.85696 -20.50689 -20.36561 -18.73288 -18.14471 -17.44057 -16.33603 -15.91924 -15.73348 -15.08412 -14.75734 -14.70520 -14.24028 -13.87534 -13.39794 -13.21133 -12.92832 -12.90608 -12.83079 -12.74123 -12.33957 -12.17463 -12.07487 -11.68289 -11.35309 -11.16058 -11.13621 -10.81503 -10.70305 -10.34714 -10.18114 -9.97048 -9.70538 -9.59257 -9.26981 -8.95372 -8.76460 -8.51613 -8.38090 -8.13839 -5.99263 -4.09036 1.65231 2.56379 2.88497 3.14177 3.32231 3.36167 3.40592 3.71795 4.41041 4.46444 4.64662 4.75454 4.88116 4.96772 5.11389 5.19082 5.27436 5.35758 5.45222 5.62916 5.75121 5.81816 5.94270 6.03464 6.19412 6.26415 6.41122 6.42577 6.54633 6.72865 6.84375 6.86437 6.95196 7.05440 7.07032 7.15626 7.35332 7.46733 7.59307 7.72594 8.04546 8.15816 8.41842 8.55172 8.90680 9.12212 9.56458 11.02111 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.003465 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.952816 B = 8079.454975 C = 8719.529223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.009 4.009 6 C -0.204 4.204 7 C -0.210 4.210 8 C -0.046 4.046 9 O -0.177 6.177 10 N -0.747 5.747 11 C 0.700 3.300 12 O -0.600 6.600 13 N -0.733 5.733 14 C 0.151 3.849 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.505 4.505 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.200 0.800 34 H 0.391 0.609 35 H 0.392 0.608 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.005 0.995 39 H 0.084 0.916 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.084 0.916 43 H 0.005 0.995 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -2.206 -19.876 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.059 3.941 3 H 0.108 0.892 4 C -0.085 4.085 5 C -0.059 4.059 6 C -0.223 4.223 7 C -0.229 4.229 8 C -0.114 4.114 9 O -0.073 6.073 10 N -0.403 5.403 11 C 0.400 3.600 12 O -0.479 6.479 13 N -0.387 5.387 14 C 0.028 3.972 15 C 0.055 3.945 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.217 0.783 34 H 0.224 0.776 35 H 0.227 0.773 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.103 0.897 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.103 0.897 43 H 0.024 0.976 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.987 -0.999 -19.807 19.932 hybrid contribution 0.666 -0.583 1.002 1.337 sum -1.321 -1.582 -18.805 18.917 Atomic orbital electron populations 1.22205 0.94918 1.02178 1.02876 1.20678 0.93703 0.97434 0.82264 0.89199 1.20502 0.85803 1.02934 0.99269 1.22274 0.94561 0.89254 0.99792 1.21535 0.92274 1.02594 1.05867 1.21842 0.98926 0.98156 1.04021 1.23977 0.82965 0.99859 1.04555 1.83997 1.18187 1.44069 1.61031 1.45165 1.72838 1.13297 1.09039 1.16042 0.78504 0.85132 0.80351 1.90874 1.57760 1.14546 1.84743 1.45486 1.69557 1.13940 1.09739 1.21559 0.99919 0.94928 0.80778 1.18360 0.92145 0.92144 0.91830 1.21806 0.98157 0.99747 0.98919 1.21805 0.98643 1.00061 0.98126 1.20955 1.43862 0.96213 0.93348 0.92496 1.24871 0.95030 0.94880 0.98699 1.69795 1.44726 1.08880 1.29120 0.86636 0.78512 0.79655 0.83070 1.20289 1.21360 1.20292 0.91777 0.92424 0.91352 0.88554 0.88363 0.83726 0.83556 0.78306 0.77564 0.77308 0.93102 0.93039 0.97585 0.89703 0.95502 0.95526 0.89706 0.97571 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.28 16 2 C 0.17 1.87 2.56 -67.93 -0.17 1.70 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 4 C -0.05 -0.40 5.29 -27.88 -0.15 -0.55 16 5 C -0.01 -0.10 6.33 -35.62 -0.23 -0.32 16 6 C -0.20 -2.26 10.69 -39.70 -0.42 -2.69 16 7 C -0.21 -2.31 10.91 -39.70 -0.43 -2.74 16 8 C -0.05 -0.48 12.09 29.42 0.36 -0.13 16 9 O -0.18 -2.14 10.65 5.70 0.06 -2.08 16 10 N -0.75 -9.73 4.70 -58.68 -0.28 -10.00 16 11 C 0.70 12.64 8.53 -86.93 -0.74 11.90 16 12 O -0.60 -13.25 16.01 5.29 0.08 -13.17 16 13 N -0.73 -13.44 4.96 -65.22 -0.32 -13.76 16 14 C 0.15 3.32 4.50 -4.04 -0.02 3.30 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.24 16 16 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 17 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 18 C -0.51 -13.39 8.01 -34.44 -0.28 -13.66 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 21 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 22 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.39 4.10 8.62 -40.82 -0.35 3.75 16 35 H 0.39 6.45 6.18 -40.82 -0.25 6.19 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 39 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 44 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -31.20 358.47 -7.81 -39.02 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.96 Total: 8.76 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.30 Total: -6.83 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.08 Total: -46.97 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.15 Total: -15.25 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.20 -7.81 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837557447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.975 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds