Wall clock time and date at job start Tue Mar 31 2020 07:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46666 * 2 1 4 4 C 1.52997 * 109.47050 * 240.00272 * 2 1 3 5 5 C 1.50708 * 109.47127 * 175.00022 * 4 2 1 6 6 C 1.34506 * 125.79179 * 90.01288 * 5 4 2 7 7 C 1.41388 * 106.83998 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.83843 * 359.97438 * 7 6 5 9 9 O 1.34304 * 108.42331 * 0.02562 * 8 7 6 10 10 N 1.46499 * 109.47391 * 119.99461 * 2 1 3 11 11 C 1.34769 * 120.00448 * 275.00355 * 10 2 1 12 12 O 1.21588 * 119.99797 * 0.02562 * 11 10 2 13 13 N 1.34770 * 120.00265 * 179.97438 * 11 10 2 14 14 C 1.46506 * 120.00302 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47216 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47161 * 300.00021 * 15 14 13 17 17 C 1.53001 * 109.46991 * 60.00118 * 15 14 13 18 18 C 1.50702 * 109.46920 * 180.02562 * 15 14 13 19 19 H 1.07995 * 119.99871 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99884 * 180.02562 * 18 15 14 21 21 N 1.31509 * 119.99839 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 119.99739 * 179.97438 * 20 18 15 23 23 H 1.48493 * 109.47110 * 60.00194 * 22 20 18 24 24 H 1.48504 * 109.46702 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47369 * 300.00040 * 22 20 18 26 26 H 1.09003 * 109.47621 * 60.00459 * 1 2 3 27 27 H 1.09005 * 109.46666 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47404 * 299.99567 * 1 2 3 29 29 H 1.08998 * 109.47369 * 54.99474 * 4 2 1 30 30 H 1.09005 * 109.46999 * 294.99290 * 4 2 1 31 31 H 1.08000 * 126.58117 * 359.96027 * 6 5 4 32 32 H 1.08001 * 126.57691 * 180.26094 * 7 6 5 33 33 H 1.07998 * 125.78442 * 180.02562 * 8 7 6 34 34 H 0.97003 * 119.99551 * 95.00447 * 10 2 1 35 35 H 0.96998 * 120.00229 * 0.02562 * 13 11 10 36 36 H 1.09003 * 109.46994 * 300.00310 * 14 13 11 37 37 H 1.09003 * 109.46521 * 60.00157 * 14 13 11 38 38 H 1.08995 * 109.46698 * 59.99991 * 16 15 14 39 39 H 1.08993 * 109.46889 * 180.02562 * 16 15 14 40 40 H 1.08998 * 109.46941 * 299.99927 * 16 15 14 41 41 H 1.08996 * 109.46837 * 59.99714 * 17 15 14 42 42 H 1.09002 * 109.46864 * 179.97438 * 17 15 14 43 43 H 1.08996 * 109.46961 * 299.99588 * 17 15 14 44 44 H 0.97003 * 120.00340 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 6 4.4156 -1.4849 -0.7752 7 6 5.7105 -1.0013 -1.0723 8 6 5.5507 0.1351 -1.7740 9 8 4.2350 0.3644 -1.9165 10 7 2.0184 -0.6905 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8574 1.1614 2.4118 13 7 2.5959 -0.6535 3.4576 14 6 2.7363 0.0775 4.7195 15 6 3.2607 -0.8688 5.8015 16 6 2.2762 -2.0249 5.9887 17 6 4.6229 -1.4223 5.3784 18 6 3.4045 -0.1169 7.0996 19 1 3.1481 0.9310 7.1479 20 6 3.8646 -0.7667 8.2253 21 7 4.1774 -2.0427 8.1662 22 14 4.0436 0.1654 9.8341 23 1 2.7214 0.7021 10.2449 24 1 4.5524 -0.7531 10.8843 25 1 4.9987 1.2879 9.6523 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2056 31 1 4.1742 -2.3809 -0.2226 32 1 6.6481 -1.4592 -0.7936 33 1 6.3455 0.7574 -2.1578 34 1 2.2491 -1.6317 1.1526 35 1 2.8266 -1.5946 3.4142 36 1 3.4380 0.9009 4.5862 37 1 1.7659 0.4722 5.0206 38 1 2.1718 -2.5687 5.0499 39 1 2.6495 -2.6987 6.7598 40 1 1.3058 -1.6306 6.2901 41 1 5.3242 -0.5986 5.2450 42 1 4.9966 -2.0960 6.1494 43 1 4.5184 -1.9662 4.4396 44 1 4.5014 -2.4999 8.9580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837557447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:11 Heat of formation + Delta-G solvation = -48.502175 kcal Electronic energy + Delta-G solvation = -24093.164740 eV Core-core repulsion = 20625.168178 eV Total energy + Delta-G solvation = -3467.996562 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.43474 -41.07361 -38.46040 -37.12363 -34.98017 -33.86846 -33.25512 -32.17813 -30.68796 -27.55014 -27.43598 -27.13578 -26.55567 -23.01848 -22.67930 -21.68028 -21.29457 -20.55561 -19.56328 -18.25609 -17.76348 -17.40236 -16.81381 -16.63943 -16.40700 -15.79308 -15.57826 -15.23728 -14.73771 -14.61380 -14.44568 -13.98774 -13.89704 -13.70065 -13.59029 -13.27552 -13.12799 -13.07783 -12.94251 -12.66762 -12.61131 -12.45310 -12.23724 -12.12576 -11.99476 -11.47045 -11.32901 -11.10875 -10.79226 -10.69990 -10.39286 -10.26716 -9.64385 -9.30874 -8.01119 -6.16651 0.85157 1.44879 1.45714 1.52457 1.74858 1.86023 2.17355 2.27595 2.47311 3.22387 3.45115 3.72994 3.87270 4.15649 4.20799 4.33571 4.40222 4.43932 4.54710 4.60555 4.72325 4.78103 4.85560 4.98120 4.98621 5.03908 5.07419 5.09517 5.13924 5.21449 5.28805 5.37081 5.40703 5.62133 5.66151 5.67980 5.68447 5.68611 6.12451 6.16535 6.23262 6.25636 6.45114 6.87042 7.21985 7.50826 7.70263 8.97634 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.003465 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.952816 B = 8079.454975 C = 8719.529223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.056 0.944 4 C -0.037 4.037 5 C -0.024 4.024 6 C -0.217 4.217 7 C -0.232 4.232 8 C -0.054 4.054 9 O -0.195 6.195 10 N -0.726 5.726 11 C 0.697 3.303 12 O -0.644 6.644 13 N -0.726 5.726 14 C 0.169 3.831 15 C 0.052 3.948 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.530 4.530 19 H 0.043 0.957 20 C 0.030 3.970 21 N -0.898 5.898 22 Si 0.944 3.056 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.278 1.278 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.033 0.967 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.228 0.772 34 H 0.408 0.592 35 H 0.404 0.596 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.017 0.983 41 H 0.014 0.986 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 -3.493 -21.411 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 H 0.074 0.926 4 C -0.074 4.074 5 C -0.074 4.074 6 C -0.236 4.236 7 C -0.251 4.251 8 C -0.120 4.120 9 O -0.092 6.092 10 N -0.383 5.383 11 C 0.397 3.603 12 O -0.526 6.526 13 N -0.382 5.382 14 C 0.045 3.955 15 C 0.051 3.949 16 C -0.175 4.175 17 C -0.175 4.175 18 C -0.569 4.569 19 H 0.061 0.939 20 C -0.170 4.170 21 N -0.537 5.537 22 Si 0.771 3.229 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.204 1.204 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.136 0.864 30 H 0.147 0.853 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.244 0.756 34 H 0.244 0.756 35 H 0.241 0.759 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.033 0.967 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.287 -2.341 -21.386 21.635 hybrid contribution 0.783 -0.171 1.418 1.629 sum -1.503 -2.512 -19.968 20.181 Atomic orbital electron populations 1.22143 0.93550 1.03435 1.02378 1.20800 0.94690 0.96039 0.82630 0.92597 1.20564 0.84212 1.04517 0.98120 1.22775 0.95754 0.89048 0.99840 1.21865 0.92454 1.03252 1.06038 1.22182 0.99642 0.98709 1.04546 1.24630 0.83062 1.00184 1.04155 1.83995 1.18983 1.44731 1.61499 1.45028 1.71433 1.13931 1.07866 1.16198 0.78133 0.84679 0.81268 1.90849 1.59512 1.16713 1.85544 1.45176 1.69919 1.14218 1.08851 1.21078 0.98201 0.94259 0.81989 1.18359 0.92883 0.92441 0.91196 1.21634 0.97090 0.99016 0.99763 1.21637 0.97707 0.99327 0.98837 1.21241 1.44437 0.96012 0.95204 0.93890 1.25429 0.94874 0.95654 1.01051 1.69894 1.44678 1.09475 1.29623 0.85833 0.78259 0.78644 0.80166 1.20265 1.20696 1.20363 0.89387 0.90218 0.94773 0.86421 0.85327 0.82254 0.82407 0.75552 0.75592 0.75896 0.95187 0.94788 0.94411 0.91899 0.96416 0.96660 0.91856 0.94505 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.48 71.98 0.68 -2.13 16 2 C 0.16 3.42 2.56 44.99 0.12 3.54 16 3 H 0.06 1.59 7.58 -2.38 -0.02 1.57 16 4 C -0.04 -0.51 5.29 29.85 0.16 -0.35 16 5 C -0.02 -0.50 6.33 24.83 0.16 -0.34 16 6 C -0.22 -4.39 10.69 22.19 0.24 -4.15 16 7 C -0.23 -4.76 10.91 22.19 0.24 -4.51 16 8 C -0.05 -1.05 12.09 66.97 0.81 -0.24 16 9 O -0.20 -4.50 10.65 -2.51 -0.03 -4.53 16 10 N -0.73 -17.59 4.70 -457.84 -2.15 -19.74 16 11 C 0.70 24.79 8.53 179.06 1.53 26.31 16 12 O -0.64 -28.94 16.01 -3.99 -0.06 -29.00 16 13 N -0.73 -25.91 4.96 -478.53 -2.37 -28.29 16 14 C 0.17 7.50 4.50 86.38 0.39 7.89 16 15 C 0.05 2.44 0.50 -52.92 -0.03 2.41 16 16 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 17 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 18 C -0.53 -28.50 8.01 25.60 0.21 -28.29 16 19 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 20 C 0.03 1.58 5.15 84.66 0.44 2.02 16 21 N -0.90 -47.99 9.35 21.45 0.20 -47.79 16 22 Si 0.94 42.94 29.54 68.60 2.03 44.97 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.23 2.72 8.06 -2.91 -0.02 2.69 16 34 H 0.41 7.28 8.62 -92.71 -0.80 6.48 16 35 H 0.40 12.33 6.18 -92.71 -0.57 11.75 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 39 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 43 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 44 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -69.03 358.47 3.34 -65.70 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.37 Total: 25.87 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 6.10 Total: -7.19 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -4.32 Total: -95.82 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.09 Total: -33.53 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -69.03 3.34 -65.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837557447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.194 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds