Wall clock time and date at job start Tue Mar 31 2020 07:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46680 * 2 1 4 4 C 1.53003 * 109.46991 * 240.00774 * 2 1 3 5 5 C 1.50698 * 109.47306 * 64.99841 * 4 2 1 6 6 O 1.20821 * 120.00419 * 359.97438 * 5 4 2 7 7 O 1.34231 * 119.99516 * 179.97438 * 5 4 2 8 8 C 1.45202 * 116.99423 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46861 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47112 * 299.99851 * 9 8 7 11 11 C 1.52999 * 109.47071 * 60.00156 * 9 8 7 12 12 C 1.50701 * 109.47037 * 180.02562 * 9 8 7 13 13 H 1.07998 * 120.00172 * 359.97438 * 12 9 8 14 14 C 1.37873 * 120.00038 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00023 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 120.00143 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.46830 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47420 * 119.99879 * 16 14 12 19 19 H 1.48504 * 109.46778 * 239.99791 * 16 14 12 20 20 C 1.50695 * 109.47550 * 120.00199 * 2 1 3 21 21 C 1.39870 * 126.03480 * 59.68926 * 20 2 1 22 22 N 1.30839 * 108.20307 * 180.26430 * 21 20 2 23 23 N 1.40087 * 108.20037 * 0.02562 * 22 21 20 24 24 C 1.46503 * 126.03503 * 180.02562 * 23 22 21 25 25 C 1.34939 * 107.93005 * 0.02562 * 23 22 21 26 26 H 1.09004 * 109.47589 * 59.99737 * 1 2 3 27 27 H 1.09007 * 109.46897 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47530 * 299.99528 * 1 2 3 29 29 H 1.09008 * 109.46753 * 184.99714 * 4 2 1 30 30 H 1.09001 * 109.46791 * 304.99360 * 4 2 1 31 31 H 1.09001 * 109.47351 * 299.99895 * 8 7 5 32 32 H 1.08997 * 109.47548 * 59.99981 * 8 7 5 33 33 H 1.09000 * 109.46851 * 60.00633 * 10 9 8 34 34 H 1.09002 * 109.47005 * 179.97438 * 10 9 8 35 35 H 1.08996 * 109.47379 * 300.00537 * 10 9 8 36 36 H 1.09001 * 109.47256 * 60.00047 * 11 9 8 37 37 H 1.09002 * 109.47048 * 179.97438 * 11 9 8 38 38 H 1.08992 * 109.47291 * 299.99780 * 11 9 8 39 39 H 0.96997 * 120.00124 * 179.97438 * 15 14 12 40 40 H 1.08001 * 125.90246 * 0.26835 * 21 20 2 41 41 H 1.09002 * 109.47095 * 269.97899 * 24 23 22 42 42 H 1.09005 * 109.47183 * 29.97817 * 24 23 22 43 43 H 1.08999 * 109.47391 * 149.97530 * 24 23 22 44 44 H 1.07999 * 126.13213 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6413 0.0573 -2.4766 6 8 1.0132 1.0833 -2.3637 7 8 1.9839 -0.3893 -3.6952 8 6 1.5658 0.4113 -4.8321 9 6 2.0433 -0.2517 -6.1258 10 6 3.5694 -0.3584 -6.1110 11 6 1.4351 -1.6512 -6.2363 12 6 1.6098 0.5795 -7.3058 13 1 1.0495 1.4893 -7.1488 14 6 1.9277 0.1779 -8.5859 15 7 2.6097 -0.9303 -8.7771 16 14 1.3911 1.2086 -10.0485 17 1 0.6435 2.3982 -9.5681 18 1 2.5879 1.6494 -10.8092 19 1 0.5150 0.3969 -10.9311 20 6 2.0324 -0.7104 1.2304 21 6 1.7686 -2.0391 1.5787 22 7 2.3698 -2.2913 2.7131 23 7 3.0357 -1.1291 3.1232 24 6 3.8338 -0.9778 4.3425 25 6 2.8124 -0.1735 2.1970 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 3.1264 -0.7993 -1.2057 30 1 1.6054 -1.7197 -1.2953 31 1 0.4785 0.4870 -4.8430 32 1 1.9986 1.4085 -4.7533 33 1 3.8833 -0.9595 -5.2575 34 1 3.9095 -0.8311 -7.0324 35 1 4.0027 0.6386 -6.0322 36 1 0.3478 -1.5751 -6.2469 37 1 1.7749 -2.1233 -7.1581 38 1 1.7489 -2.2521 -5.3828 39 1 2.8330 -1.2130 -9.6777 40 1 1.1717 -2.7365 1.0097 41 1 3.1927 -0.6398 5.1567 42 1 4.2804 -1.9367 4.6057 43 1 4.6220 -0.2445 4.1722 44 1 3.1892 0.8383 2.2223 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842336269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:05 Heat of formation + Delta-G solvation = -25.855485 kcal Electronic energy + Delta-G solvation = -23510.379291 eV Core-core repulsion = 20043.364763 eV Total energy + Delta-G solvation = -3467.014528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45708 -39.93383 -36.89397 -35.34870 -34.70512 -32.96427 -31.26078 -29.93395 -28.23977 -26.74150 -25.58998 -25.56786 -24.98785 -22.90693 -21.35560 -20.62979 -19.47368 -18.80262 -17.34135 -16.67806 -16.03081 -15.79523 -15.70070 -15.57733 -14.73718 -14.62831 -14.20692 -13.82996 -13.35332 -13.15539 -13.07823 -12.95891 -12.73767 -12.62984 -12.32636 -11.72207 -11.66509 -11.36851 -11.24130 -11.11912 -11.08853 -10.92220 -10.65579 -10.53417 -10.38176 -10.18043 -9.89354 -9.81782 -9.62213 -9.36867 -9.26381 -8.72220 -8.55430 -8.36200 -6.00228 -4.11642 1.68015 2.29940 2.59902 2.71544 3.27762 3.33543 3.36900 3.43730 4.25915 4.40435 4.60690 4.78707 4.80488 4.87078 5.04368 5.08712 5.17822 5.26151 5.44363 5.50759 5.59136 5.60585 5.69347 5.90308 6.06913 6.15195 6.15616 6.27921 6.37232 6.49803 6.52183 6.77499 6.79504 7.01428 7.14462 7.17322 7.21926 7.44633 7.49452 7.65103 7.72197 8.07819 8.18853 8.34279 8.43216 8.88765 9.53841 11.00983 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038063 B = 0.002648 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.441688 B =10572.424428 C =10785.420627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.002 3.998 3 H 0.083 0.917 4 C -0.107 4.107 5 C 0.453 3.547 6 O -0.519 6.519 7 O -0.350 6.350 8 C 0.085 3.915 9 C 0.069 3.931 10 C -0.129 4.129 11 C -0.130 4.130 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.226 4.226 21 C 0.057 3.943 22 N -0.300 5.300 23 N -0.381 5.381 24 C 0.103 3.897 25 C 0.057 3.943 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.017 0.983 34 H 0.083 0.917 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.083 0.917 38 H 0.017 0.983 39 H 0.260 0.740 40 H 0.183 0.817 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 -0.560 22.328 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 H 0.101 0.899 4 C -0.145 4.145 5 C 0.297 3.703 6 O -0.410 6.410 7 O -0.266 6.266 8 C 0.012 3.988 9 C 0.069 3.931 10 C -0.187 4.187 11 C -0.187 4.187 12 C -0.548 4.548 13 H 0.075 0.925 14 C -0.134 4.134 15 N -0.521 5.521 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.237 4.237 21 C -0.129 4.129 22 N -0.121 5.121 23 N -0.163 5.163 24 C -0.039 4.039 25 C -0.089 4.089 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.102 0.898 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.199 0.801 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.003 -1.223 23.209 23.327 hybrid contribution -0.449 1.324 -1.420 1.993 sum 1.554 0.101 21.789 21.844 Atomic orbital electron populations 1.21955 0.94049 1.01749 1.02906 1.19181 0.96141 0.98249 0.88177 0.89883 1.21436 1.03691 1.00087 0.89315 1.23597 0.76565 0.84262 0.85896 1.90582 1.37894 1.24921 1.87578 1.86529 1.71562 1.53401 1.15116 1.23625 0.98753 0.93515 0.82908 1.18244 0.93376 0.93588 0.87917 1.21768 0.97323 0.98588 1.01037 1.21766 0.97917 0.97867 1.01172 1.20987 1.35523 1.08206 0.90126 0.92482 1.24865 0.94814 0.95078 0.98678 1.69843 1.38803 1.22123 1.21298 0.86495 0.78384 0.80363 0.82515 1.19783 1.20985 1.20978 1.20031 1.07941 0.95382 1.00370 1.23782 0.99086 0.96162 0.93876 1.77358 1.13499 1.05969 1.15270 1.48437 1.40387 1.08476 1.18985 1.21830 0.94384 1.04047 0.83604 1.22349 1.00222 0.95676 0.90637 0.90504 0.93047 0.92923 0.88097 0.88006 0.92635 0.92671 0.96436 0.89784 0.95883 0.95858 0.89786 0.96402 0.92987 0.80054 0.90902 0.89366 0.89517 0.80962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.82 37.16 0.33 -1.39 16 2 C 0.00 0.03 2.40 -91.77 -0.22 -0.19 16 3 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 4 C -0.11 -1.31 5.15 -27.88 -0.14 -1.46 16 5 C 0.45 7.67 7.68 36.00 0.28 7.95 16 6 O -0.52 -9.81 13.72 -18.75 -0.26 -10.07 16 7 O -0.35 -6.94 8.88 -39.26 -0.35 -7.28 16 8 C 0.08 1.88 4.26 37.16 0.16 2.04 16 9 C 0.07 1.70 0.58 -155.66 -0.09 1.61 16 10 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 11 C -0.13 -3.14 8.11 37.16 0.30 -2.83 16 12 C -0.51 -13.69 8.01 -34.44 -0.28 -13.96 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 15 N -0.88 -24.07 9.35 55.43 0.52 -23.55 16 16 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.23 -2.33 4.80 -105.06 -0.50 -2.83 16 21 C 0.06 0.61 11.54 -17.36 -0.20 0.41 16 22 N -0.30 -3.53 12.58 30.63 0.39 -3.14 16 23 N -0.38 -3.59 4.01 -68.16 -0.27 -3.86 16 24 C 0.10 0.52 11.47 59.85 0.69 1.21 16 25 C 0.06 0.51 11.38 -17.23 -0.20 0.32 16 26 H 0.08 1.07 5.96 -51.93 -0.31 0.76 16 27 H 0.05 0.53 8.02 -51.93 -0.42 0.12 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 1.14 8.14 -51.92 -0.42 0.71 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.05 1.24 8.13 -51.93 -0.42 0.81 16 33 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 34 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 38 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 39 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.18 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -31.24 359.81 -6.42 -37.66 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.18 Total: -0.78 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 0.33 Total: -10.26 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.63 Total: -30.56 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.61 Total: -17.36 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.24 -6.42 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842336269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.808 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds