Wall clock time and date at job start Tue Mar 31 2020 07:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46673 * 2 1 4 4 C 1.52992 * 109.47285 * 120.00082 * 2 1 3 5 5 C 1.50702 * 109.47263 * 295.00303 * 4 2 1 6 6 O 1.20822 * 119.99854 * 359.72154 * 5 4 2 7 7 O 1.34234 * 119.99997 * 179.97438 * 5 4 2 8 8 C 1.45199 * 116.99947 * 179.72219 * 7 5 4 9 9 C 1.53003 * 109.46980 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47295 * 300.00004 * 9 8 7 11 11 C 1.52996 * 109.46723 * 60.00112 * 9 8 7 12 12 C 1.50696 * 109.47045 * 180.02562 * 9 8 7 13 13 H 1.08004 * 119.99979 * 0.02562 * 12 9 8 14 14 C 1.37872 * 120.00365 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99620 * 0.02562 * 14 12 9 16 16 Si 1.86793 * 120.00418 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47163 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46949 * 120.00303 * 16 14 12 19 19 H 1.48497 * 109.47599 * 240.00277 * 16 14 12 20 20 C 1.50699 * 109.46915 * 240.00524 * 2 1 3 21 21 C 1.39871 * 126.03885 * 299.68322 * 20 2 1 22 22 N 1.30836 * 108.20077 * 179.82258 * 21 20 2 23 23 N 1.40085 * 108.20655 * 0.44089 * 22 21 20 24 24 C 1.46501 * 126.03769 * 179.73686 * 23 22 21 25 25 C 1.34948 * 107.92241 * 359.71952 * 23 22 21 26 26 H 1.09006 * 109.47328 * 59.99985 * 1 2 3 27 27 H 1.09000 * 109.47555 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47351 * 299.99980 * 1 2 3 29 29 H 1.09001 * 109.47602 * 174.99825 * 4 2 1 30 30 H 1.09001 * 109.46922 * 54.99971 * 4 2 1 31 31 H 1.08997 * 109.46967 * 299.99772 * 8 7 5 32 32 H 1.09002 * 109.46640 * 59.99976 * 8 7 5 33 33 H 1.09003 * 109.46899 * 60.00092 * 10 9 8 34 34 H 1.08997 * 109.47216 * 179.97438 * 10 9 8 35 35 H 1.09002 * 109.47450 * 300.00471 * 10 9 8 36 36 H 1.09002 * 109.47098 * 60.00096 * 11 9 8 37 37 H 1.09006 * 109.46719 * 179.97438 * 11 9 8 38 38 H 1.08999 * 109.47654 * 299.99443 * 11 9 8 39 39 H 0.97002 * 119.99939 * 179.97438 * 15 14 12 40 40 H 1.08001 * 125.89928 * 0.02562 * 21 20 2 41 41 H 1.08995 * 109.47009 * 269.97955 * 24 23 22 42 42 H 1.09004 * 109.46895 * 29.97946 * 24 23 22 43 43 H 1.08997 * 109.46884 * 149.97561 * 24 23 22 44 44 H 1.08001 * 126.12411 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6413 0.0570 2.4765 6 8 1.0180 1.0858 2.3635 7 8 1.9831 -0.3902 3.6952 8 6 1.5709 0.4137 4.8319 9 6 2.0464 -0.2506 6.1256 10 6 1.4307 -1.6467 6.2382 11 6 3.5719 -0.3657 6.1087 12 6 1.6180 0.5834 7.3053 13 1 1.0618 1.4958 7.1482 14 6 1.9352 0.1813 8.5854 15 7 2.6120 -0.9300 8.7768 16 14 1.4049 1.2154 10.0478 17 1 0.6623 2.4083 9.5672 18 1 0.5257 0.4086 10.9317 19 1 2.6044 1.6512 10.8070 20 6 2.0323 -0.7103 -1.2305 21 6 1.7785 -2.0425 -1.5729 22 7 2.3776 -2.2938 -2.7086 23 7 3.0409 -1.1307 -3.1203 24 6 3.8399 -0.9797 -4.3389 25 6 2.8134 -0.1738 -2.1964 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.1263 -0.7995 1.2055 30 1 1.6054 -1.7198 1.2950 31 1 2.0091 1.4084 4.7514 32 1 0.4840 0.4954 4.8440 33 1 1.7402 -2.2501 5.3849 34 1 1.7699 -2.1201 7.1596 35 1 0.3439 -1.5647 6.2501 36 1 4.0105 0.6289 6.0285 37 1 3.9108 -0.8386 7.0306 38 1 3.8814 -0.9692 5.2554 39 1 2.8355 -1.2128 9.6773 40 1 1.1872 -2.7419 -1.0005 41 1 4.8774 -1.2387 -4.1275 42 1 3.4507 -1.6412 -5.1129 43 1 3.7861 0.0532 -4.6830 44 1 3.1875 0.8390 -2.2233 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842336271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:07 Heat of formation + Delta-G solvation = -25.879148 kcal Electronic energy + Delta-G solvation = -23511.050895 eV Core-core repulsion = 20044.035341 eV Total energy + Delta-G solvation = -3467.015554 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45684 -39.93330 -36.89415 -35.34937 -34.70543 -32.96452 -31.26157 -29.93398 -28.23863 -26.74409 -25.58951 -25.56750 -24.98755 -22.90582 -21.35742 -20.62907 -19.47261 -18.80262 -17.34107 -16.67804 -16.03071 -15.79174 -15.69756 -15.58552 -14.73565 -14.62823 -14.20468 -13.82171 -13.38396 -13.13009 -13.08951 -12.96004 -12.73259 -12.62771 -12.32864 -11.72159 -11.66425 -11.36872 -11.24157 -11.11946 -11.08841 -10.92225 -10.65554 -10.53385 -10.38160 -10.18038 -9.89525 -9.81781 -9.62112 -9.36857 -9.26384 -8.72207 -8.55432 -8.36225 -6.00237 -4.11626 1.68047 2.29959 2.59835 2.71557 3.27773 3.33552 3.36910 3.43725 4.25560 4.40438 4.60621 4.78396 4.81429 4.86847 5.04438 5.08761 5.17750 5.26175 5.44343 5.50754 5.59091 5.60514 5.69311 5.90292 6.06929 6.15219 6.15621 6.27943 6.37149 6.49773 6.52156 6.77504 6.79497 7.01432 7.14451 7.17313 7.21906 7.44633 7.49471 7.65116 7.72191 8.07828 8.18862 8.34277 8.43233 8.88762 9.53847 11.00985 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037999 B = 0.002649 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.680176 B =10567.969475 C =10781.304145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.002 3.998 3 H 0.083 0.917 4 C -0.107 4.107 5 C 0.453 3.547 6 O -0.519 6.519 7 O -0.350 6.350 8 C 0.085 3.915 9 C 0.069 3.931 10 C -0.129 4.129 11 C -0.130 4.130 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.226 4.226 21 C 0.057 3.943 22 N -0.300 5.300 23 N -0.381 5.381 24 C 0.103 3.897 25 C 0.057 3.943 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.017 0.983 34 H 0.083 0.917 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.083 0.917 38 H 0.017 0.983 39 H 0.260 0.740 40 H 0.183 0.817 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 -0.532 -22.388 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 H 0.101 0.899 4 C -0.145 4.145 5 C 0.297 3.703 6 O -0.410 6.410 7 O -0.266 6.266 8 C 0.012 3.988 9 C 0.069 3.931 10 C -0.187 4.187 11 C -0.187 4.187 12 C -0.548 4.548 13 H 0.075 0.925 14 C -0.134 4.134 15 N -0.521 5.521 16 Si 0.723 3.277 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.237 4.237 21 C -0.129 4.129 22 N -0.121 5.121 23 N -0.163 5.163 24 C -0.039 4.039 25 C -0.089 4.089 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.102 0.898 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.199 0.801 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.892 -1.194 -23.269 23.376 hybrid contribution -0.425 1.319 1.432 1.993 sum 1.467 0.125 -21.837 21.886 Atomic orbital electron populations 1.21952 0.94049 1.01747 1.02893 1.19180 0.96148 0.98258 0.88165 0.89876 1.21434 1.03683 1.00098 0.89319 1.23597 0.76520 0.84307 0.85892 1.90582 1.38051 1.24763 1.87578 1.86529 1.71733 1.53221 1.15128 1.23625 0.98810 0.93449 0.82916 1.18242 0.93367 0.93598 0.87917 1.21768 0.97907 0.97870 1.01172 1.21768 0.97321 0.98595 1.01037 1.20986 1.35767 1.07960 0.90132 0.92484 1.24863 0.94817 0.95079 0.98680 1.69843 1.38942 1.21980 1.21298 0.86493 0.78366 0.80378 0.82510 1.19782 1.20979 1.20987 1.20032 1.07960 0.95291 1.00437 1.23782 0.99085 0.96102 0.93942 1.77355 1.13558 1.05971 1.15210 1.48439 1.40300 1.08440 1.19110 1.21828 0.94629 1.03458 0.83949 1.22350 1.00022 0.95719 0.90798 0.92921 0.93043 0.90527 0.88092 0.88015 0.92673 0.92634 0.96416 0.89786 0.95852 0.95889 0.89783 0.96423 0.92989 0.80052 0.90787 0.89419 0.89572 0.80964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.83 37.16 0.33 -1.38 16 2 C 0.00 0.02 2.40 -91.78 -0.22 -0.19 16 3 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 4 C -0.11 -1.31 5.14 -27.89 -0.14 -1.46 16 5 C 0.45 7.67 7.67 36.01 0.28 7.95 16 6 O -0.52 -9.82 13.73 -18.75 -0.26 -10.07 16 7 O -0.35 -6.94 8.88 -39.27 -0.35 -7.29 16 8 C 0.08 1.88 4.26 37.16 0.16 2.04 16 9 C 0.07 1.70 0.58 -155.66 -0.09 1.61 16 10 C -0.13 -3.14 8.11 37.16 0.30 -2.83 16 11 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 12 C -0.51 -13.69 8.01 -34.44 -0.28 -13.97 16 13 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 14 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 15 N -0.88 -24.07 9.35 55.43 0.52 -23.55 16 16 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.23 -2.33 4.80 -105.05 -0.50 -2.83 16 21 C 0.06 0.61 11.54 -17.36 -0.20 0.41 16 22 N -0.30 -3.53 12.58 30.62 0.39 -3.14 16 23 N -0.38 -3.59 4.01 -68.16 -0.27 -3.86 16 24 C 0.10 0.52 11.47 59.85 0.69 1.21 16 25 C 0.06 0.51 11.38 -17.22 -0.20 0.32 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.53 8.03 -51.93 -0.42 0.11 16 28 H 0.08 1.06 5.97 -51.93 -0.31 0.75 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 1.24 8.13 -51.93 -0.42 0.81 16 32 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 33 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 34 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 38 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 39 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -31.25 359.83 -6.42 -37.67 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.18 Total: -0.78 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 0.33 Total: -10.26 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.63 Total: -30.56 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.61 Total: -17.36 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.25 -6.42 -37.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842336271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.792 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds