Wall clock time and date at job start Tue Mar 31 2020 07:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46673 * 2 1 4 4 C 1.52992 * 109.47285 * 120.00082 * 2 1 3 5 5 C 1.50702 * 109.47263 * 295.00303 * 4 2 1 6 6 O 1.20822 * 119.99854 * 359.72154 * 5 4 2 7 7 O 1.34234 * 119.99997 * 179.97438 * 5 4 2 8 8 C 1.45199 * 116.99947 * 179.72219 * 7 5 4 9 9 C 1.53003 * 109.46980 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47295 * 300.00004 * 9 8 7 11 11 C 1.52996 * 109.46723 * 60.00112 * 9 8 7 12 12 C 1.50696 * 109.47045 * 180.02562 * 9 8 7 13 13 H 1.08004 * 119.99979 * 0.02562 * 12 9 8 14 14 C 1.37872 * 120.00365 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99620 * 0.02562 * 14 12 9 16 16 Si 1.86793 * 120.00418 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47163 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46949 * 120.00303 * 16 14 12 19 19 H 1.48497 * 109.47599 * 240.00277 * 16 14 12 20 20 C 1.50699 * 109.46915 * 240.00524 * 2 1 3 21 21 C 1.39871 * 126.03885 * 299.68322 * 20 2 1 22 22 N 1.30836 * 108.20077 * 179.82258 * 21 20 2 23 23 N 1.40085 * 108.20655 * 0.44089 * 22 21 20 24 24 C 1.46501 * 126.03769 * 179.73686 * 23 22 21 25 25 C 1.34948 * 107.92241 * 359.71952 * 23 22 21 26 26 H 1.09006 * 109.47328 * 59.99985 * 1 2 3 27 27 H 1.09000 * 109.47555 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47351 * 299.99980 * 1 2 3 29 29 H 1.09001 * 109.47602 * 174.99825 * 4 2 1 30 30 H 1.09001 * 109.46922 * 54.99971 * 4 2 1 31 31 H 1.08997 * 109.46967 * 299.99772 * 8 7 5 32 32 H 1.09002 * 109.46640 * 59.99976 * 8 7 5 33 33 H 1.09003 * 109.46899 * 60.00092 * 10 9 8 34 34 H 1.08997 * 109.47216 * 179.97438 * 10 9 8 35 35 H 1.09002 * 109.47450 * 300.00471 * 10 9 8 36 36 H 1.09002 * 109.47098 * 60.00096 * 11 9 8 37 37 H 1.09006 * 109.46719 * 179.97438 * 11 9 8 38 38 H 1.08999 * 109.47654 * 299.99443 * 11 9 8 39 39 H 0.97002 * 119.99939 * 179.97438 * 15 14 12 40 40 H 1.08001 * 125.89928 * 0.02562 * 21 20 2 41 41 H 1.08995 * 109.47009 * 269.97955 * 24 23 22 42 42 H 1.09004 * 109.46895 * 29.97946 * 24 23 22 43 43 H 1.08997 * 109.46884 * 149.97561 * 24 23 22 44 44 H 1.08001 * 126.12411 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6413 0.0570 2.4765 6 8 1.0180 1.0858 2.3635 7 8 1.9831 -0.3902 3.6952 8 6 1.5709 0.4137 4.8319 9 6 2.0464 -0.2506 6.1256 10 6 1.4307 -1.6467 6.2382 11 6 3.5719 -0.3657 6.1087 12 6 1.6180 0.5834 7.3053 13 1 1.0618 1.4958 7.1482 14 6 1.9352 0.1813 8.5854 15 7 2.6120 -0.9300 8.7768 16 14 1.4049 1.2154 10.0478 17 1 0.6623 2.4083 9.5672 18 1 0.5257 0.4086 10.9317 19 1 2.6044 1.6512 10.8070 20 6 2.0323 -0.7103 -1.2305 21 6 1.7785 -2.0425 -1.5729 22 7 2.3776 -2.2938 -2.7086 23 7 3.0409 -1.1307 -3.1203 24 6 3.8399 -0.9797 -4.3389 25 6 2.8134 -0.1738 -2.1964 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.1263 -0.7995 1.2055 30 1 1.6054 -1.7198 1.2950 31 1 2.0091 1.4084 4.7514 32 1 0.4840 0.4954 4.8440 33 1 1.7402 -2.2501 5.3849 34 1 1.7699 -2.1201 7.1596 35 1 0.3439 -1.5647 6.2501 36 1 4.0105 0.6289 6.0285 37 1 3.9108 -0.8386 7.0306 38 1 3.8814 -0.9692 5.2554 39 1 2.8355 -1.2128 9.6773 40 1 1.1872 -2.7419 -1.0005 41 1 4.8774 -1.2387 -4.1275 42 1 3.4507 -1.6412 -5.1129 43 1 3.7861 0.0532 -4.6830 44 1 3.1875 0.8390 -2.2233 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842336271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:07 Heat of formation + Delta-G solvation = -42.061261 kcal Electronic energy + Delta-G solvation = -23511.752604 eV Core-core repulsion = 20044.035341 eV Total energy + Delta-G solvation = -3467.717263 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19102 -41.34828 -38.46571 -36.74094 -36.09322 -33.63150 -33.24662 -30.72565 -29.29398 -27.54838 -27.44087 -27.32714 -26.83504 -23.87945 -22.17580 -21.71920 -20.66988 -20.36054 -18.65285 -17.81081 -17.45294 -17.35757 -17.17853 -16.51074 -16.26662 -15.48919 -15.22270 -15.04344 -14.76697 -14.46232 -14.35442 -13.88447 -13.69028 -13.49839 -13.39262 -13.31784 -13.15211 -13.02440 -12.81724 -12.58164 -12.44505 -12.29022 -12.13106 -12.11263 -11.97287 -11.66218 -11.44195 -11.31414 -11.19575 -11.02069 -10.70181 -10.39342 -10.32352 -9.28323 -8.03285 -6.21219 0.99308 1.35867 1.42655 1.45625 1.55504 1.72146 1.79554 2.05771 2.47275 3.20018 3.63994 3.78360 4.01275 4.14453 4.20383 4.32336 4.32535 4.37144 4.46251 4.48089 4.64565 4.67226 4.72282 4.73839 4.79235 4.88177 4.88576 5.02980 5.07899 5.21341 5.23027 5.25372 5.39285 5.41144 5.47660 5.64362 5.66132 5.72626 5.83225 6.10153 6.18029 6.20590 6.39288 6.78037 6.82360 6.94316 7.46794 8.96465 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037999 B = 0.002649 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.680176 B =10567.969475 C =10781.304145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.013 3.987 3 H 0.078 0.922 4 C -0.098 4.098 5 C 0.451 3.549 6 O -0.540 6.540 7 O -0.358 6.358 8 C 0.098 3.902 9 C 0.060 3.940 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.531 4.531 13 H 0.049 0.951 14 C 0.026 3.974 15 N -0.900 5.900 16 Si 0.952 3.048 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.241 4.241 21 C 0.050 3.950 22 N -0.336 5.336 23 N -0.383 5.383 24 C 0.093 3.907 25 C 0.063 3.937 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.262 0.738 40 H 0.194 0.806 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -0.282 -23.809 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.007 4.007 3 H 0.097 0.903 4 C -0.136 4.136 5 C 0.296 3.704 6 O -0.431 6.431 7 O -0.274 6.274 8 C 0.024 3.976 9 C 0.059 3.941 10 C -0.177 4.177 11 C -0.177 4.177 12 C -0.570 4.570 13 H 0.067 0.933 14 C -0.174 4.174 15 N -0.539 5.539 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.252 4.252 21 C -0.135 4.135 22 N -0.158 5.158 23 N -0.165 5.165 24 C -0.047 4.047 25 C -0.083 4.083 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.211 0.789 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.132 0.868 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.389 -0.954 -24.719 24.853 hybrid contribution -0.555 1.251 1.760 2.230 sum 1.834 0.297 -22.959 23.034 Atomic orbital electron populations 1.21902 0.94563 1.02080 1.01807 1.19029 0.95630 0.97968 0.88033 0.90323 1.21584 1.04719 1.00215 0.87046 1.24547 0.75651 0.84366 0.85854 1.90582 1.38961 1.25957 1.87615 1.86522 1.72178 1.53040 1.15664 1.23167 0.98050 0.93045 0.83299 1.18266 0.93583 0.93625 0.88601 1.21623 0.97583 0.97795 1.00679 1.21622 0.97093 0.98435 1.00520 1.21242 1.36119 1.08152 0.91441 0.93306 1.25520 0.94881 0.96090 1.00865 1.69952 1.39265 1.22828 1.21813 0.85597 0.78016 0.78961 0.79580 1.19714 1.20594 1.20565 1.19928 1.09338 0.95316 1.00653 1.24046 0.99027 0.96596 0.93870 1.77302 1.14867 1.07634 1.15992 1.48788 1.39898 1.07798 1.19982 1.22166 0.94554 1.05338 0.82601 1.22832 0.98798 0.96695 0.90011 0.92274 0.92048 0.93204 0.86532 0.86199 0.93418 0.93428 0.94812 0.91925 0.96130 0.96129 0.91920 0.94838 0.92882 0.78925 0.89773 0.89298 0.86822 0.78089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.83 71.98 0.64 -2.55 16 2 C 0.01 0.27 2.40 -11.54 -0.03 0.24 16 3 H 0.08 1.68 7.92 -2.39 -0.02 1.66 16 4 C -0.10 -2.20 5.14 29.85 0.15 -2.05 16 5 C 0.45 14.79 7.67 71.24 0.55 15.33 16 6 O -0.54 -20.23 13.73 21.98 0.30 -19.93 16 7 O -0.36 -13.84 8.88 -51.46 -0.46 -14.30 16 8 C 0.10 4.35 4.26 71.98 0.31 4.65 16 9 C 0.06 2.94 0.58 -52.93 -0.03 2.90 16 10 C -0.12 -5.75 8.11 71.98 0.58 -5.17 16 11 C -0.12 -5.74 8.11 71.98 0.58 -5.16 16 12 C -0.53 -28.69 8.01 25.60 0.21 -28.49 16 13 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 14 C 0.03 1.41 5.15 84.65 0.44 1.84 16 15 N -0.90 -49.27 9.35 21.45 0.20 -49.07 16 16 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 C -0.24 -4.45 4.80 -20.14 -0.10 -4.54 16 21 C 0.05 0.99 11.54 85.24 0.98 1.97 16 22 N -0.34 -7.41 12.58 -57.02 -0.72 -8.13 16 23 N -0.38 -6.36 4.01 -369.57 -1.48 -7.84 16 24 C 0.09 0.72 11.47 127.77 1.47 2.19 16 25 C 0.06 0.98 11.38 83.54 0.95 1.93 16 26 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.06 1.18 8.03 -2.39 -0.02 1.17 16 28 H 0.05 1.36 5.97 -2.38 -0.01 1.35 16 29 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 2.15 8.13 -2.39 -0.02 2.13 16 32 H 0.05 2.15 8.13 -2.39 -0.02 2.13 16 33 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 34 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.93 16 36 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 3.29 6.07 -2.38 -0.01 3.28 16 38 H 0.03 1.45 7.68 -2.39 -0.02 1.44 16 39 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 40 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 41 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.20 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -66.53 359.83 7.54 -58.99 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.97 Total: 12.33 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 6.70 Total: -16.89 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -2.00 Total: -65.04 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.16 Total: -34.22 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -66.53 7.54 -58.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842336271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.930 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds