Wall clock time and date at job start Tue Mar 31 2020 07:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46895 * 2 1 4 4 C 1.52992 * 109.47222 * 239.99920 * 2 1 3 5 5 C 1.50700 * 109.47257 * 65.00044 * 4 2 1 6 6 O 1.20822 * 119.99958 * 359.97438 * 5 4 2 7 7 O 1.34234 * 120.00068 * 180.02562 * 5 4 2 8 8 C 1.45196 * 116.99938 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47070 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.47505 * 300.00350 * 9 8 7 11 11 C 1.52998 * 109.46989 * 60.00116 * 9 8 7 12 12 C 1.52998 * 109.47242 * 180.02562 * 9 8 7 13 13 C 1.50704 * 109.47188 * 180.02562 * 12 9 8 14 14 H 1.07996 * 120.00305 * 359.97438 * 13 12 9 15 15 C 1.37879 * 119.99992 * 179.97438 * 13 12 9 16 16 N 1.31521 * 119.99984 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47173 * 90.00328 * 17 15 13 19 19 H 1.48499 * 109.47352 * 210.00296 * 17 15 13 20 20 H 1.48502 * 109.47259 * 330.00050 * 17 15 13 21 21 N 1.46498 * 109.46860 * 119.99951 * 2 1 3 22 22 C 1.36888 * 126.39597 * 239.71387 * 21 2 1 23 23 C 1.34669 * 106.81557 * 179.84461 * 22 21 2 24 24 N 1.34126 * 108.02007 * 0.41731 * 23 22 21 25 25 C 1.30497 * 109.25775 * 359.73659 * 24 23 22 26 26 H 1.09005 * 109.46613 * 60.00132 * 1 2 3 27 27 H 1.08993 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47147 * 300.00359 * 1 2 3 29 29 H 1.09004 * 109.47330 * 305.00067 * 4 2 1 30 30 H 1.08997 * 109.47279 * 185.00554 * 4 2 1 31 31 H 1.08996 * 109.47465 * 299.99911 * 8 7 5 32 32 H 1.08999 * 109.47008 * 59.99921 * 8 7 5 33 33 H 1.08999 * 109.46743 * 59.99340 * 10 9 8 34 34 H 1.08995 * 109.47247 * 180.02562 * 10 9 8 35 35 H 1.08999 * 109.46824 * 300.00005 * 10 9 8 36 36 H 1.09004 * 109.47306 * 60.00196 * 11 9 8 37 37 H 1.09006 * 109.47255 * 180.02562 * 11 9 8 38 38 H 1.09003 * 109.47378 * 299.99864 * 11 9 8 39 39 H 1.09004 * 109.47100 * 299.99832 * 12 9 8 40 40 H 1.08999 * 109.47046 * 60.00020 * 12 9 8 41 41 H 0.96998 * 119.99842 * 179.97438 * 16 15 13 42 42 H 1.07996 * 126.59190 * 359.97438 * 22 21 2 43 43 H 1.08001 * 125.98900 * 180.11831 * 23 22 21 44 44 H 1.08004 * 125.64754 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 8 1.0134 1.0830 -2.3637 7 8 1.9832 -0.3901 -3.6952 8 6 1.5651 0.4103 -4.8322 9 6 2.0427 -0.2527 -6.1257 10 6 3.5689 -0.3598 -6.1108 11 6 1.4344 -1.6523 -6.2361 12 6 1.6028 0.5910 -7.3238 13 6 2.0726 -0.0624 -8.5980 14 1 2.6296 -0.9868 -8.5573 15 6 1.7913 0.5199 -9.8157 16 7 1.1134 1.6458 -9.8653 17 14 2.3742 -0.2896 -11.3950 18 1 1.3326 -1.2285 -11.8837 19 1 2.6226 0.7527 -12.4231 20 1 3.6308 -1.0366 -11.1338 21 7 2.0183 -0.6906 1.1962 22 6 2.8129 -0.1569 2.1747 23 6 3.0184 -1.1294 3.0833 24 7 2.3746 -2.2297 2.6662 25 6 1.7734 -1.9743 1.5365 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6054 -1.7198 -1.2951 30 1 3.1263 -0.7995 -1.2055 31 1 0.4779 0.4868 -4.8426 32 1 1.9988 1.4072 -4.7538 33 1 3.8826 -0.9606 -5.2572 34 1 3.9090 -0.8317 -7.0326 35 1 4.0022 0.6373 -6.0322 36 1 0.3471 -1.5761 -6.2468 37 1 1.7750 -2.1249 -7.1575 38 1 1.7482 -2.2532 -5.3825 39 1 0.5155 0.6675 -7.3347 40 1 2.0364 1.5879 -7.2450 41 1 0.9158 2.0557 -10.7219 42 1 3.1990 0.8510 2.2121 43 1 3.6034 -1.0406 3.9868 44 1 1.1787 -2.6738 0.9677 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845556408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:00 Heat of formation + Delta-G solvation = -45.094620 kcal Electronic energy + Delta-G solvation = -23491.420558 eV Core-core repulsion = 20023.571759 eV Total energy + Delta-G solvation = -3467.848800 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.38579 -40.56537 -37.67584 -36.08952 -35.41751 -32.40676 -31.39798 -29.58072 -28.86117 -27.26344 -26.49178 -26.36050 -23.97177 -22.99612 -21.66130 -21.22612 -20.18112 -18.34599 -18.14985 -16.94619 -16.62407 -16.42122 -16.06892 -15.47425 -14.94226 -14.61337 -14.39608 -14.10976 -13.85321 -13.70200 -13.46773 -13.32787 -13.07041 -12.70371 -12.41350 -12.14682 -12.11162 -11.95045 -11.72305 -11.34068 -11.02618 -10.88895 -10.67753 -10.62719 -10.42255 -10.39306 -10.27199 -10.21119 -9.94570 -9.82879 -9.29261 -9.01588 -8.78050 -8.42107 -6.06379 -4.07769 1.77155 2.09427 2.21315 2.92014 2.94937 3.27689 3.34770 3.37062 3.95345 4.24104 4.39546 4.45802 4.52028 4.60182 4.83714 4.94596 5.05348 5.17074 5.29095 5.30429 5.37324 5.39372 5.40667 5.46639 5.71302 5.77560 5.93539 6.02190 6.09436 6.28420 6.42514 6.47472 6.51613 6.63138 6.68739 6.89643 7.03247 7.03370 7.05955 7.53521 7.64805 7.71236 7.82549 7.91839 8.33157 8.96471 9.55687 11.05210 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.041375 B = 0.002535 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.577258 B =11044.849424 C =11297.356144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.146 3.854 3 H 0.112 0.888 4 C -0.128 4.128 5 C 0.464 3.536 6 O -0.510 6.510 7 O -0.346 6.346 8 C 0.079 3.921 9 C -0.059 4.059 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.035 3.965 13 C -0.510 4.510 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.454 5.454 22 C -0.054 4.054 23 C -0.032 4.032 24 N -0.496 5.496 25 C 0.182 3.818 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.261 0.739 42 H 0.173 0.827 43 H 0.169 0.831 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -4.020 20.746 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.042 3.958 3 H 0.130 0.870 4 C -0.167 4.167 5 C 0.306 3.694 6 O -0.400 6.400 7 O -0.262 6.262 8 C 0.007 3.993 9 C -0.059 4.059 10 C -0.184 4.184 11 C -0.183 4.183 12 C -0.002 4.002 13 C -0.549 4.549 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.137 5.137 22 C -0.187 4.187 23 C -0.180 4.180 24 N -0.214 5.214 25 C -0.100 4.100 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.191 0.809 43 H 0.186 0.814 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.248 -4.253 20.893 21.358 hybrid contribution 0.217 0.659 -1.449 1.606 sum 1.464 -3.594 19.444 19.828 Atomic orbital electron populations 1.22331 0.92091 1.03390 1.04922 1.21189 0.96474 0.96961 0.81130 0.87033 1.21665 1.04867 1.00786 0.89336 1.23039 0.76697 0.84089 0.85557 1.90657 1.37440 1.24481 1.87409 1.86491 1.71688 1.53162 1.14870 1.23572 0.99770 0.93791 0.82207 1.20825 0.96075 0.96933 0.92046 1.21723 0.94809 1.00728 1.01107 1.21721 0.99728 0.95807 1.01090 1.19132 0.96684 0.94365 0.90062 1.21137 1.34950 1.08373 0.90398 0.92069 1.25019 0.95320 0.94980 0.99213 1.69964 1.39874 1.18138 1.25481 0.86605 0.79125 0.79059 0.83291 1.20700 1.21300 1.19858 1.45734 1.37979 1.11562 1.18449 1.22797 1.02134 1.01474 0.92280 1.22313 1.04708 0.89630 1.01373 1.70314 1.12417 1.28156 1.10526 1.24934 1.03810 0.85305 0.95934 0.88395 0.91795 0.91500 0.86837 0.86919 0.91423 0.91470 0.94250 0.91465 0.93764 0.93733 0.91487 0.94234 0.96334 0.96336 0.92975 0.80928 0.81416 0.78128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 8.99 37.16 0.33 -1.00 16 2 C 0.15 1.14 2.70 -67.93 -0.18 0.95 16 3 H 0.11 0.89 7.90 -51.93 -0.41 0.48 16 4 C -0.13 -1.04 5.28 -27.89 -0.15 -1.19 16 5 C 0.46 5.68 7.68 36.01 0.28 5.96 16 6 O -0.51 -7.37 13.72 -18.75 -0.26 -7.62 16 7 O -0.35 -5.02 8.88 -39.27 -0.35 -5.37 16 8 C 0.08 1.35 4.32 37.16 0.16 1.51 16 9 C -0.06 -1.12 0.61 -154.51 -0.09 -1.22 16 10 C -0.13 -2.29 8.08 37.16 0.30 -1.99 16 11 C -0.13 -2.27 8.08 37.16 0.30 -1.97 16 12 C 0.03 0.84 4.04 -27.88 -0.11 0.72 16 13 C -0.51 -13.40 7.65 -34.44 -0.26 -13.66 16 14 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 15 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 17 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 21 N -0.45 -3.79 2.62 -111.46 -0.29 -4.08 16 22 C -0.05 -0.45 11.54 -16.56 -0.19 -0.64 16 23 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 24 N -0.50 -5.69 11.25 -14.67 -0.16 -5.86 16 25 C 0.18 1.67 11.65 -90.38 -1.05 0.62 16 26 H 0.10 0.95 5.96 -51.93 -0.31 0.64 16 27 H 0.06 0.43 7.95 -51.93 -0.41 0.02 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.11 0.74 8.08 -51.93 -0.42 0.32 16 30 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 32 H 0.07 1.17 8.13 -51.93 -0.42 0.74 16 33 H 0.04 0.62 7.68 -51.93 -0.40 0.23 16 34 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 38 H 0.04 0.62 7.68 -51.93 -0.40 0.22 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -31.28 360.31 -8.02 -39.30 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.12 Total: -1.45 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -0.98 Total: -10.99 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.28 Total: -35.22 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.61 Total: -13.00 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.28 -8.02 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845556408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.798 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds