Wall clock time and date at job start Tue Mar 31 2020 07:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46895 * 2 1 4 4 C 1.52992 * 109.47222 * 239.99920 * 2 1 3 5 5 C 1.50700 * 109.47257 * 65.00044 * 4 2 1 6 6 O 1.20822 * 119.99958 * 359.97438 * 5 4 2 7 7 O 1.34234 * 120.00068 * 180.02562 * 5 4 2 8 8 C 1.45196 * 116.99938 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47070 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.47505 * 300.00350 * 9 8 7 11 11 C 1.52998 * 109.46989 * 60.00116 * 9 8 7 12 12 C 1.52998 * 109.47242 * 180.02562 * 9 8 7 13 13 C 1.50704 * 109.47188 * 180.02562 * 12 9 8 14 14 H 1.07996 * 120.00305 * 359.97438 * 13 12 9 15 15 C 1.37879 * 119.99992 * 179.97438 * 13 12 9 16 16 N 1.31521 * 119.99984 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47173 * 90.00328 * 17 15 13 19 19 H 1.48499 * 109.47352 * 210.00296 * 17 15 13 20 20 H 1.48502 * 109.47259 * 330.00050 * 17 15 13 21 21 N 1.46498 * 109.46860 * 119.99951 * 2 1 3 22 22 C 1.36888 * 126.39597 * 239.71387 * 21 2 1 23 23 C 1.34669 * 106.81557 * 179.84461 * 22 21 2 24 24 N 1.34126 * 108.02007 * 0.41731 * 23 22 21 25 25 C 1.30497 * 109.25775 * 359.73659 * 24 23 22 26 26 H 1.09005 * 109.46613 * 60.00132 * 1 2 3 27 27 H 1.08993 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47147 * 300.00359 * 1 2 3 29 29 H 1.09004 * 109.47330 * 305.00067 * 4 2 1 30 30 H 1.08997 * 109.47279 * 185.00554 * 4 2 1 31 31 H 1.08996 * 109.47465 * 299.99911 * 8 7 5 32 32 H 1.08999 * 109.47008 * 59.99921 * 8 7 5 33 33 H 1.08999 * 109.46743 * 59.99340 * 10 9 8 34 34 H 1.08995 * 109.47247 * 180.02562 * 10 9 8 35 35 H 1.08999 * 109.46824 * 300.00005 * 10 9 8 36 36 H 1.09004 * 109.47306 * 60.00196 * 11 9 8 37 37 H 1.09006 * 109.47255 * 180.02562 * 11 9 8 38 38 H 1.09003 * 109.47378 * 299.99864 * 11 9 8 39 39 H 1.09004 * 109.47100 * 299.99832 * 12 9 8 40 40 H 1.08999 * 109.47046 * 60.00020 * 12 9 8 41 41 H 0.96998 * 119.99842 * 179.97438 * 16 15 13 42 42 H 1.07996 * 126.59190 * 359.97438 * 22 21 2 43 43 H 1.08001 * 125.98900 * 180.11831 * 23 22 21 44 44 H 1.08004 * 125.64754 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 8 1.0134 1.0830 -2.3637 7 8 1.9832 -0.3901 -3.6952 8 6 1.5651 0.4103 -4.8322 9 6 2.0427 -0.2527 -6.1257 10 6 3.5689 -0.3598 -6.1108 11 6 1.4344 -1.6523 -6.2361 12 6 1.6028 0.5910 -7.3238 13 6 2.0726 -0.0624 -8.5980 14 1 2.6296 -0.9868 -8.5573 15 6 1.7913 0.5199 -9.8157 16 7 1.1134 1.6458 -9.8653 17 14 2.3742 -0.2896 -11.3950 18 1 1.3326 -1.2285 -11.8837 19 1 2.6226 0.7527 -12.4231 20 1 3.6308 -1.0366 -11.1338 21 7 2.0183 -0.6906 1.1962 22 6 2.8129 -0.1569 2.1747 23 6 3.0184 -1.1294 3.0833 24 7 2.3746 -2.2297 2.6662 25 6 1.7734 -1.9743 1.5365 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6054 -1.7198 -1.2951 30 1 3.1263 -0.7995 -1.2055 31 1 0.4779 0.4868 -4.8426 32 1 1.9988 1.4072 -4.7538 33 1 3.8826 -0.9606 -5.2572 34 1 3.9090 -0.8317 -7.0326 35 1 4.0022 0.6373 -6.0322 36 1 0.3471 -1.5761 -6.2468 37 1 1.7750 -2.1249 -7.1575 38 1 1.7482 -2.2532 -5.3825 39 1 0.5155 0.6675 -7.3347 40 1 2.0364 1.5879 -7.2450 41 1 0.9158 2.0557 -10.7219 42 1 3.1990 0.8510 2.2121 43 1 3.6034 -1.0406 3.9868 44 1 1.1787 -2.6738 0.9677 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845556408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:59 Heat of formation + Delta-G solvation = -60.287123 kcal Electronic energy + Delta-G solvation = -23492.079355 eV Core-core repulsion = 20023.571759 eV Total energy + Delta-G solvation = -3468.507596 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.04223 -41.63387 -38.96746 -37.20658 -36.47473 -34.41422 -32.11268 -30.26423 -29.71450 -29.05503 -27.95544 -27.68665 -25.20169 -24.36994 -22.39898 -22.09355 -20.92866 -19.90279 -19.01234 -18.36021 -17.79941 -17.63344 -17.19494 -16.50899 -16.16619 -15.82482 -15.40397 -15.10152 -14.80332 -14.71807 -14.62310 -14.28633 -14.17241 -13.98049 -13.86726 -13.63002 -13.11165 -12.86786 -12.74245 -12.65462 -12.60278 -12.33815 -12.31715 -12.23647 -11.97131 -11.82884 -11.58815 -11.35261 -11.03594 -10.91299 -10.89739 -10.62886 -10.52819 -9.42574 -8.16329 -6.23701 1.11141 1.12934 1.39890 1.42642 1.43524 1.53436 2.05921 2.26124 2.43884 3.18517 3.29409 3.56810 3.70493 3.89894 3.92996 3.94803 4.01602 4.06961 4.23185 4.35406 4.45753 4.53400 4.60447 4.61233 4.70680 4.73801 4.76153 4.85715 5.01620 5.08909 5.13938 5.14400 5.36737 5.43024 5.46551 5.48529 5.53610 5.54409 5.74784 5.84770 5.87437 6.26859 6.28206 6.67167 6.90372 7.17048 7.43997 8.96140 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.041375 B = 0.002535 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.577258 B =11044.849424 C =11297.356144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 H 0.110 0.890 4 C -0.116 4.116 5 C 0.464 3.536 6 O -0.534 6.534 7 O -0.346 6.346 8 C 0.091 3.909 9 C -0.056 4.056 10 C -0.120 4.120 11 C -0.120 4.120 12 C 0.039 3.961 13 C -0.514 4.514 14 H 0.071 0.929 15 C -0.004 4.004 16 N -0.937 5.937 17 Si 0.958 3.042 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.261 1.261 21 N -0.452 5.452 22 C -0.052 4.052 23 C -0.055 4.055 24 N -0.535 5.535 25 C 0.179 3.821 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.053 0.947 38 H 0.068 0.932 39 H -0.009 1.009 40 H -0.010 1.010 41 H 0.260 0.740 42 H 0.197 0.803 43 H 0.181 0.819 44 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -5.660 21.656 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.128 0.872 4 C -0.154 4.154 5 C 0.308 3.692 6 O -0.424 6.424 7 O -0.262 6.262 8 C 0.017 3.983 9 C -0.056 4.056 10 C -0.177 4.177 11 C -0.177 4.177 12 C 0.002 3.998 13 C -0.552 4.552 14 H 0.089 0.911 15 C -0.201 4.201 16 N -0.578 5.578 17 Si 0.784 3.216 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.185 1.185 21 N -0.135 5.135 22 C -0.185 4.185 23 C -0.201 4.201 24 N -0.254 5.254 25 C -0.103 4.103 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.145 0.855 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.069 0.931 42 H 0.214 0.786 43 H 0.198 0.802 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.180 -5.906 21.828 22.718 hybrid contribution -0.094 1.199 -1.628 2.024 sum 2.086 -4.707 20.199 20.845 Atomic orbital electron populations 1.22268 0.92160 1.04033 1.03925 1.21104 0.96312 0.96809 0.80851 0.87182 1.21716 1.05821 1.01058 0.86828 1.23818 0.75796 0.84018 0.85566 1.90667 1.38484 1.25763 1.87486 1.86466 1.71947 1.52663 1.15089 1.23106 0.99112 0.93371 0.82685 1.20621 0.97052 0.96813 0.91079 1.21652 0.93630 1.00831 1.01620 1.21652 0.99357 0.95042 1.01667 1.18996 0.94646 0.93897 0.92293 1.21537 1.34066 1.08416 0.91165 0.91112 1.25922 0.95646 0.95567 1.02924 1.70106 1.41619 1.19870 1.26209 0.85542 0.79093 0.78041 0.78967 1.20087 1.21463 1.18502 1.45736 1.37876 1.11426 1.18428 1.23196 1.01425 1.02218 0.91678 1.22661 1.05328 0.89740 1.02418 1.70289 1.13795 1.29416 1.11922 1.25427 1.03452 0.85843 0.95592 0.90278 0.90385 0.91532 0.84394 0.85485 0.92153 0.92374 0.91391 0.92802 0.94315 0.94176 0.92803 0.91302 0.99097 0.99170 0.93088 0.78624 0.80236 0.75719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 8.99 71.98 0.65 -1.63 16 2 C 0.15 1.98 2.70 44.99 0.12 2.11 16 3 H 0.11 1.51 7.90 -2.39 -0.02 1.49 16 4 C -0.12 -1.51 5.28 29.85 0.16 -1.35 16 5 C 0.46 10.37 7.68 71.24 0.55 10.92 16 6 O -0.53 -14.85 13.72 21.98 0.30 -14.55 16 7 O -0.35 -9.25 8.88 -51.46 -0.46 -9.71 16 8 C 0.09 3.05 4.32 71.98 0.31 3.36 16 9 C -0.06 -2.10 0.61 -52.18 -0.03 -2.13 16 10 C -0.12 -4.18 8.08 71.98 0.58 -3.60 16 11 C -0.12 -4.13 8.08 71.98 0.58 -3.55 16 12 C 0.04 1.93 4.04 29.85 0.12 2.05 16 13 C -0.51 -27.20 7.65 25.60 0.20 -27.01 16 14 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 15 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 16 N -0.94 -55.86 13.29 21.45 0.28 -55.57 16 17 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 N -0.45 -6.37 2.62 -506.56 -1.33 -7.70 16 22 C -0.05 -0.76 11.54 83.09 0.96 0.20 16 23 C -0.05 -0.98 11.87 83.52 0.99 0.01 16 24 N -0.54 -11.49 11.25 -200.31 -2.25 -13.75 16 25 C 0.18 2.84 11.65 180.26 2.10 4.94 16 26 H 0.08 1.44 5.96 -2.38 -0.01 1.43 16 27 H 0.08 0.84 7.95 -2.39 -0.02 0.82 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.14 1.19 8.08 -2.38 -0.02 1.18 16 30 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 32 H 0.06 2.04 8.13 -2.39 -0.02 2.02 16 33 H 0.07 1.97 7.68 -2.39 -0.02 1.95 16 34 H 0.05 2.00 6.62 -2.39 -0.02 1.98 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.98 6.62 -2.38 -0.02 1.96 16 38 H 0.07 1.96 7.68 -2.39 -0.02 1.94 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 44 H 0.23 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -68.45 360.31 7.29 -61.16 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.97 Total: 10.46 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 7.74 Total: -15.41 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -3.29 Total: -77.02 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.16 Total: -24.26 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.45 7.29 -61.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845556408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.873 kcal (2) G-P(sol) polarization free energy of solvation -68.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds