Wall clock time and date at job start Tue Mar 31 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.46298 * 113.99902 * 2 1 4 4 C 1.46899 * 111.00032 * 243.95686 * 3 2 1 5 5 C 1.46895 * 110.99895 * 119.99921 * 3 2 1 6 6 C 1.53004 * 109.47116 * 184.99629 * 5 3 2 7 7 N 1.46901 * 109.46820 * 180.02562 * 6 5 3 8 8 C 1.46903 * 110.99623 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47148 * 34.99954 * 8 7 6 10 10 C 1.53002 * 109.47101 * 274.99787 * 8 7 6 11 11 C 1.50704 * 109.47151 * 155.00233 * 8 7 6 12 12 C 1.38299 * 119.93072 * 39.72221 * 11 8 7 13 13 C 1.38099 * 120.06809 * 179.72372 * 12 11 8 14 14 C 1.38876 * 119.92991 * 0.55702 * 13 12 11 15 15 O 1.35750 * 120.06959 * 179.74905 * 14 13 12 16 16 C 1.34827 * 117.00104 * 174.43819 * 15 14 13 17 17 H 1.07994 * 120.00121 * 5.05448 * 16 15 14 18 18 C 1.38654 * 119.99939 * 185.05211 * 16 15 14 19 19 N 1.31560 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99963 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47358 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47641 * 119.99953 * 20 18 16 23 23 H 1.48500 * 109.47103 * 239.99990 * 20 18 16 24 24 C 1.38875 * 119.86408 * 359.71864 * 14 13 12 25 25 C 1.38105 * 119.92901 * 0.02562 * 24 14 13 26 26 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47466 * 300.00081 * 1 2 3 28 28 H 1.08999 * 109.47581 * 59.99677 * 1 2 3 29 29 H 1.09007 * 109.46842 * 296.04830 * 4 3 2 30 30 H 1.08997 * 109.47175 * 56.04478 * 4 3 2 31 31 H 1.09006 * 109.47355 * 176.04980 * 4 3 2 32 32 H 1.09009 * 109.47035 * 65.00011 * 5 3 2 33 33 H 1.08998 * 109.47494 * 305.00235 * 5 3 2 34 34 H 1.09002 * 109.46710 * 60.00611 * 6 5 3 35 35 H 1.08995 * 109.47220 * 300.00180 * 6 5 3 36 36 H 1.00896 * 111.00470 * 56.05131 * 7 6 5 37 37 H 1.08998 * 109.46932 * 179.97438 * 10 8 7 38 38 H 1.08997 * 109.47255 * 300.00101 * 10 8 7 39 39 H 1.09000 * 109.46874 * 60.00073 * 10 8 7 40 40 H 1.08005 * 119.96654 * 0.02562 * 12 11 8 41 41 H 1.08000 * 120.03259 * 180.26925 * 13 12 11 42 42 H 0.97005 * 119.99499 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.04137 * 179.97438 * 24 14 13 44 44 H 1.07994 * 119.96237 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7882 1.5725 -1.2322 5 6 2.8645 1.5385 1.1877 6 6 3.3674 2.9833 1.2169 7 7 4.2084 3.1850 2.4043 8 6 4.7098 4.5645 2.4659 9 1 3.9523 5.2442 2.0757 10 6 5.9827 4.6825 1.6252 11 6 5.0178 4.9236 3.8968 12 6 5.6079 3.9912 4.7305 13 6 5.8967 4.3191 6.0406 14 6 5.5832 5.5827 6.5238 15 8 5.8611 5.9064 7.8125 16 6 5.6380 7.1828 8.1849 17 1 5.1789 7.8745 7.4941 18 6 5.9978 7.6075 9.4548 19 7 6.5565 6.7648 10.2966 20 14 5.6879 9.3758 9.9710 21 1 5.0528 10.1146 8.8503 22 1 4.7873 9.3965 11.1514 23 1 6.9780 10.0225 10.3214 24 6 4.9855 6.5149 5.6857 25 6 4.7041 6.1827 4.3751 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 3.6286 0.8797 -1.2768 30 1 2.1422 1.4162 -2.0960 31 1 3.1611 2.5968 -1.2379 32 1 3.7155 0.8583 1.1505 33 1 2.2792 1.3393 2.0853 34 1 2.5164 3.6634 1.2541 35 1 3.9528 3.1824 0.3193 36 1 4.9689 2.5223 2.4257 37 1 6.3544 5.7062 1.6706 38 1 6.7402 4.0028 2.0154 39 1 5.7599 4.4228 0.5903 40 1 5.8477 3.0072 4.3553 41 1 6.3615 3.5919 6.6899 42 1 6.8078 7.0619 11.1851 43 1 4.7401 7.4983 6.0586 44 1 4.2396 6.9073 3.7228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850478949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:22 Heat of formation + Delta-G solvation = 5.296835 kcal Electronic energy + Delta-G solvation = -22836.261234 eV Core-core repulsion = 19370.597572 eV Total energy + Delta-G solvation = -3465.663662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.20927 -38.16903 -37.32937 -35.83468 -34.21758 -32.26140 -31.06415 -30.12187 -28.09604 -27.62591 -26.83260 -25.37795 -24.52810 -22.56571 -21.92049 -21.22124 -19.98800 -17.90912 -17.33200 -16.96585 -16.03330 -15.91194 -15.62817 -14.97386 -14.83059 -14.46182 -14.23111 -13.96973 -13.67794 -13.61690 -13.50318 -13.17077 -12.92729 -12.78694 -12.65716 -12.44608 -12.17000 -12.06711 -11.70355 -11.65295 -11.38231 -11.29708 -11.15145 -10.68629 -10.57806 -10.43395 -10.38078 -10.26906 -9.28396 -9.07624 -8.79843 -8.41289 -8.10603 -7.10630 -6.41739 -4.00336 2.20210 2.28594 2.39351 3.14009 3.15446 3.20974 3.99291 4.15129 4.47219 4.62082 4.76546 4.92243 5.03639 5.09156 5.11743 5.16551 5.21627 5.26066 5.30644 5.34681 5.35637 5.40851 5.46549 5.47101 5.63496 5.70102 5.75136 5.79461 5.89564 5.97638 6.14055 6.27457 6.35107 6.47597 6.67989 6.76003 6.86858 7.01848 7.12034 7.33273 7.34928 7.46476 7.49952 7.88502 8.03785 9.04277 9.75811 10.76600 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030044 B = 0.002395 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.740300 B =11688.687652 C =11934.695810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.267 6.267 3 N -0.367 5.367 4 C 0.005 3.995 5 C 0.043 3.957 6 C 0.066 3.934 7 N -0.677 5.677 8 C 0.144 3.856 9 H 0.077 0.923 10 C -0.176 4.176 11 C -0.168 4.168 12 C -0.053 4.053 13 C -0.194 4.194 14 C 0.153 3.847 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.233 4.233 25 C -0.067 4.067 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.339 0.661 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.269 0.731 43 H 0.126 0.874 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 -7.673 -21.024 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.271 6.271 3 N -0.136 5.136 4 C -0.143 4.143 5 C -0.085 4.085 6 C -0.064 4.064 7 N -0.309 5.309 8 C 0.035 3.965 9 H 0.095 0.905 10 C -0.235 4.235 11 C -0.169 4.169 12 C -0.071 4.071 13 C -0.214 4.214 14 C 0.100 3.900 15 O -0.084 6.084 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.252 4.252 25 C -0.086 4.086 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.158 0.842 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.143 0.857 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.448 -7.550 -20.162 22.781 hybrid contribution 1.005 0.453 -0.477 1.201 sum -6.443 -7.098 -20.639 22.756 Atomic orbital electron populations 1.22614 0.80587 1.01632 1.00697 1.90687 1.20935 1.18537 1.96929 1.67499 1.34363 1.08421 1.03305 1.22784 0.97382 1.01774 0.92390 1.22367 0.96213 0.96571 0.93353 1.21919 0.97526 0.95232 0.91686 1.60470 1.25650 1.05040 1.39706 1.20173 0.94530 0.88787 0.93044 0.90507 1.22499 0.99023 1.03118 0.98867 1.19044 1.08164 0.95050 0.94648 1.20302 0.96891 0.97472 0.92475 1.20209 1.09044 0.95939 0.96182 1.19392 0.92211 0.93207 0.85197 1.83979 1.74023 1.30063 1.20320 1.21360 1.41344 0.84562 0.99371 0.89081 1.25284 0.96315 0.99968 0.95062 1.70055 1.38414 1.34774 1.06678 0.85653 0.78327 0.80505 0.78969 1.19142 1.20179 1.20205 1.21108 1.08333 1.01263 0.94542 1.20534 0.98153 0.95185 0.94741 0.89468 0.93458 0.93875 0.94346 0.90719 0.89164 0.93847 0.88832 0.89952 0.95142 0.84222 0.91700 0.92313 0.93492 0.87390 0.86725 0.92145 0.85678 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 11.51 101.05 1.16 1.50 16 2 O -0.27 -2.94 10.96 -13.92 -0.15 -3.10 16 3 N -0.37 -3.69 5.14 -121.13 -0.62 -4.31 16 4 C 0.01 0.04 9.77 60.06 0.59 0.63 16 5 C 0.04 0.43 5.78 -3.83 -0.02 0.41 16 6 C 0.07 0.64 5.28 -3.82 -0.02 0.62 16 7 N -0.68 -7.80 5.69 -107.95 -0.61 -8.41 16 8 C 0.14 1.82 2.79 -68.86 -0.19 1.62 16 9 H 0.08 0.95 7.66 -51.93 -0.40 0.55 16 10 C -0.18 -1.92 9.14 37.16 0.34 -1.58 16 11 C -0.17 -2.79 4.96 -104.58 -0.52 -3.30 16 12 C -0.05 -0.94 9.32 -39.61 -0.37 -1.30 16 13 C -0.19 -4.15 9.99 -39.40 -0.39 -4.54 16 14 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 15 O -0.18 -5.20 9.76 0.05 0.00 -5.20 16 16 C -0.39 -11.00 9.49 30.89 0.29 -10.70 16 17 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 18 C 0.04 1.04 5.49 -17.51 -0.10 0.95 16 19 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 20 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 C -0.23 -5.09 9.17 -39.39 -0.36 -5.45 16 25 C -0.07 -1.23 9.66 -39.61 -0.38 -1.61 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.59 6.33 -51.93 -0.33 0.26 16 32 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.85 8.06 -51.93 -0.42 0.44 16 35 H 0.03 0.26 5.72 -51.93 -0.30 -0.04 16 36 H 0.34 3.60 7.81 -39.29 -0.31 3.29 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.05 0.43 7.45 -51.93 -0.39 0.04 16 40 H 0.11 1.62 7.23 -52.48 -0.38 1.24 16 41 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 44 H 0.10 1.61 8.03 -52.49 -0.42 1.18 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -31.48 363.85 -7.27 -38.75 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.87 Total: 5.22 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -0.23 Total: -19.28 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.48 Total: -37.53 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.15 Total: -8.30 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.48 -7.27 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850478949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.044 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds