Wall clock time and date at job start Tue Mar 31 2020 07:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.46298 * 113.99902 * 2 1 4 4 C 1.46899 * 111.00032 * 243.95686 * 3 2 1 5 5 C 1.46895 * 110.99895 * 119.99921 * 3 2 1 6 6 C 1.53004 * 109.47116 * 184.99629 * 5 3 2 7 7 N 1.46901 * 109.46820 * 180.02562 * 6 5 3 8 8 C 1.46903 * 110.99623 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47148 * 34.99954 * 8 7 6 10 10 C 1.53002 * 109.47101 * 274.99787 * 8 7 6 11 11 C 1.50704 * 109.47151 * 155.00233 * 8 7 6 12 12 C 1.38299 * 119.93072 * 39.72221 * 11 8 7 13 13 C 1.38099 * 120.06809 * 179.72372 * 12 11 8 14 14 C 1.38876 * 119.92991 * 0.55702 * 13 12 11 15 15 O 1.35750 * 120.06959 * 179.74905 * 14 13 12 16 16 C 1.34827 * 117.00104 * 174.43819 * 15 14 13 17 17 H 1.07994 * 120.00121 * 5.05448 * 16 15 14 18 18 C 1.38654 * 119.99939 * 185.05211 * 16 15 14 19 19 N 1.31560 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99963 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47358 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47641 * 119.99953 * 20 18 16 23 23 H 1.48500 * 109.47103 * 239.99990 * 20 18 16 24 24 C 1.38875 * 119.86408 * 359.71864 * 14 13 12 25 25 C 1.38105 * 119.92901 * 0.02562 * 24 14 13 26 26 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47466 * 300.00081 * 1 2 3 28 28 H 1.08999 * 109.47581 * 59.99677 * 1 2 3 29 29 H 1.09007 * 109.46842 * 296.04830 * 4 3 2 30 30 H 1.08997 * 109.47175 * 56.04478 * 4 3 2 31 31 H 1.09006 * 109.47355 * 176.04980 * 4 3 2 32 32 H 1.09009 * 109.47035 * 65.00011 * 5 3 2 33 33 H 1.08998 * 109.47494 * 305.00235 * 5 3 2 34 34 H 1.09002 * 109.46710 * 60.00611 * 6 5 3 35 35 H 1.08995 * 109.47220 * 300.00180 * 6 5 3 36 36 H 1.00896 * 111.00470 * 56.05131 * 7 6 5 37 37 H 1.08998 * 109.46932 * 179.97438 * 10 8 7 38 38 H 1.08997 * 109.47255 * 300.00101 * 10 8 7 39 39 H 1.09000 * 109.46874 * 60.00073 * 10 8 7 40 40 H 1.08005 * 119.96654 * 0.02562 * 12 11 8 41 41 H 1.08000 * 120.03259 * 180.26925 * 13 12 11 42 42 H 0.97005 * 119.99499 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.04137 * 179.97438 * 24 14 13 44 44 H 1.07994 * 119.96237 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7882 1.5725 -1.2322 5 6 2.8645 1.5385 1.1877 6 6 3.3674 2.9833 1.2169 7 7 4.2084 3.1850 2.4043 8 6 4.7098 4.5645 2.4659 9 1 3.9523 5.2442 2.0757 10 6 5.9827 4.6825 1.6252 11 6 5.0178 4.9236 3.8968 12 6 5.6079 3.9912 4.7305 13 6 5.8967 4.3191 6.0406 14 6 5.5832 5.5827 6.5238 15 8 5.8611 5.9064 7.8125 16 6 5.6380 7.1828 8.1849 17 1 5.1789 7.8745 7.4941 18 6 5.9978 7.6075 9.4548 19 7 6.5565 6.7648 10.2966 20 14 5.6879 9.3758 9.9710 21 1 5.0528 10.1146 8.8503 22 1 4.7873 9.3965 11.1514 23 1 6.9780 10.0225 10.3214 24 6 4.9855 6.5149 5.6857 25 6 4.7041 6.1827 4.3751 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 3.6286 0.8797 -1.2768 30 1 2.1422 1.4162 -2.0960 31 1 3.1611 2.5968 -1.2379 32 1 3.7155 0.8583 1.1505 33 1 2.2792 1.3393 2.0853 34 1 2.5164 3.6634 1.2541 35 1 3.9528 3.1824 0.3193 36 1 4.9689 2.5223 2.4257 37 1 6.3544 5.7062 1.6706 38 1 6.7402 4.0028 2.0154 39 1 5.7599 4.4228 0.5903 40 1 5.8477 3.0072 4.3553 41 1 6.3615 3.5919 6.6899 42 1 6.8078 7.0619 11.1851 43 1 4.7401 7.4983 6.0586 44 1 4.2396 6.9073 3.7228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850478949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:21 Heat of formation + Delta-G solvation = -16.515372 kcal Electronic energy + Delta-G solvation = -22837.207083 eV Core-core repulsion = 19370.597572 eV Total energy + Delta-G solvation = -3466.609510 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82337 -39.27918 -38.45671 -37.06535 -35.12550 -34.21678 -32.14110 -31.69372 -29.45853 -28.44453 -27.47833 -27.33781 -25.32348 -23.96401 -23.37243 -22.08930 -21.39502 -19.73334 -18.80226 -18.07357 -17.01261 -16.69727 -16.61330 -16.34826 -16.10525 -15.83815 -15.48195 -15.42319 -15.15894 -14.76233 -14.46486 -14.32619 -14.07532 -14.00412 -13.72593 -13.54064 -13.46623 -13.14090 -12.95468 -12.80150 -12.59718 -12.44367 -12.24429 -12.12079 -12.08234 -11.93538 -11.68664 -11.12632 -10.99476 -10.77055 -9.79512 -9.71388 -9.29990 -8.82456 -8.45251 -6.12960 0.66285 0.76487 1.35522 1.43987 1.52113 1.54019 2.19071 2.84500 3.15836 3.35751 3.56952 3.77516 3.96596 4.05001 4.14578 4.19851 4.25638 4.39660 4.42418 4.46358 4.52771 4.62446 4.63412 4.65310 4.71439 4.75703 4.83840 4.87073 4.89508 4.93203 4.98919 5.06527 5.15033 5.20025 5.31296 5.34608 5.63153 5.66652 5.76362 5.82842 5.97771 6.06186 6.17460 6.30358 6.49493 6.99816 7.82740 8.78564 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030044 B = 0.002395 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.740300 B =11688.687652 C =11934.695810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.292 6.292 3 N -0.374 5.374 4 C 0.003 3.997 5 C 0.048 3.952 6 C 0.076 3.924 7 N -0.690 5.690 8 C 0.148 3.852 9 H 0.090 0.910 10 C -0.171 4.171 11 C -0.141 4.141 12 C -0.046 4.046 13 C -0.208 4.208 14 C 0.109 3.891 15 O -0.236 6.236 16 C -0.411 4.411 17 H 0.101 0.899 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.020 2.980 21 H -0.251 1.251 22 H -0.269 1.269 23 H -0.268 1.268 24 C -0.242 4.242 25 C -0.068 4.068 26 H 0.105 0.895 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.346 0.654 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.141 0.859 41 H 0.108 0.892 42 H 0.272 0.728 43 H 0.116 0.884 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 -7.215 -24.633 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.296 6.296 3 N -0.144 5.144 4 C -0.145 4.145 5 C -0.080 4.080 6 C -0.053 4.053 7 N -0.322 5.322 8 C 0.039 3.961 9 H 0.108 0.892 10 C -0.230 4.230 11 C -0.142 4.142 12 C -0.065 4.065 13 C -0.227 4.227 14 C 0.059 3.941 15 O -0.143 6.143 16 C -0.487 4.487 17 H 0.118 0.882 18 C -0.223 4.223 19 N -0.562 5.562 20 Si 0.839 3.161 21 H -0.174 1.174 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.262 4.262 25 C -0.086 4.086 26 H 0.123 0.877 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.166 0.834 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.159 0.841 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.357 -7.124 -23.841 26.248 hybrid contribution 1.203 0.097 0.291 1.241 sum -7.154 -7.028 -23.550 25.596 Atomic orbital electron populations 1.22751 0.79339 1.02870 1.00764 1.90655 1.22396 1.19481 1.97023 1.67534 1.34811 1.07997 1.04018 1.22888 0.97280 1.02653 0.91637 1.22260 0.95875 0.96937 0.92949 1.21830 0.97228 0.94640 0.91611 1.60327 1.26157 1.04489 1.41271 1.20135 0.96065 0.89824 0.90080 0.89177 1.22434 0.97670 1.02976 0.99943 1.19651 1.04134 0.93746 0.96719 1.20668 0.95732 0.99214 0.90847 1.20466 1.09395 0.94961 0.97875 1.19940 0.94289 0.95095 0.84784 1.83939 1.76891 1.30613 1.22876 1.21848 1.41684 0.85024 1.00122 0.88175 1.26605 0.95867 1.05125 0.94723 1.70202 1.41064 1.37501 1.07395 0.84515 0.78571 0.74135 0.78887 1.17442 1.19394 1.19351 1.21214 1.08448 1.00522 0.95979 1.20927 0.97463 0.96697 0.93510 0.87735 0.93955 0.93167 0.94452 0.90132 0.87470 0.93878 0.90608 0.90340 0.93000 0.83437 0.92077 0.92449 0.90890 0.84093 0.87377 0.91931 0.86591 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 11.51 113.37 1.30 1.88 16 2 O -0.29 -5.99 10.96 -50.15 -0.55 -6.54 16 3 N -0.37 -6.66 5.14 -537.13 -2.76 -9.42 16 4 C 0.00 0.04 9.77 127.69 1.25 1.29 16 5 C 0.05 0.85 5.78 86.31 0.50 1.35 16 6 C 0.08 1.18 5.28 86.30 0.46 1.63 16 7 N -0.69 -13.15 5.69 -495.43 -2.82 -15.98 16 8 C 0.15 3.08 2.79 44.17 0.12 3.21 16 9 H 0.09 1.74 7.66 -2.39 -0.02 1.72 16 10 C -0.17 -2.92 9.14 71.98 0.66 -2.27 16 11 C -0.14 -4.27 4.96 -19.83 -0.10 -4.36 16 12 C -0.05 -1.56 9.32 22.25 0.21 -1.35 16 13 C -0.21 -9.06 9.99 22.39 0.22 -8.83 16 14 C 0.11 5.54 6.65 22.58 0.15 5.69 16 15 O -0.24 -14.56 9.76 -22.72 -0.22 -14.78 16 16 C -0.41 -24.37 9.49 67.92 0.64 -23.73 16 17 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 18 C -0.03 -1.52 5.49 84.83 0.47 -1.06 16 19 N -0.92 -57.65 13.67 21.61 0.30 -57.36 16 20 Si 1.02 43.54 29.55 68.60 2.03 45.57 16 21 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 C -0.24 -10.70 9.17 22.39 0.21 -10.49 16 25 C -0.07 -2.31 9.66 22.25 0.21 -2.09 16 26 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 0.97 6.33 -2.38 -0.02 0.95 16 32 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.32 8.06 -2.39 -0.02 1.30 16 35 H 0.05 0.61 5.72 -2.39 -0.01 0.60 16 36 H 0.35 5.91 7.81 -89.70 -0.70 5.21 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 39 H 0.07 0.92 7.45 -2.39 -0.02 0.91 16 40 H 0.14 3.79 7.23 -2.91 -0.02 3.77 16 41 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.27 15.49 8.31 -92.70 -0.77 14.71 16 43 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 44 H 0.14 3.77 8.03 -2.91 -0.02 3.74 16 Total: -1.00 -73.57 363.85 2.56 -71.01 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.29 Total: 26.62 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 6.30 Total: -39.12 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -5.29 Total: -82.75 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.77 Total: -21.32 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -73.57 2.56 -71.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850478949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.490 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds