Wall clock time and date at job start Tue Mar 31 2020 07:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.46306 * 113.99664 * 2 1 4 4 C 1.46895 * 110.99796 * 243.95083 * 3 2 1 5 5 C 1.46899 * 110.99401 * 119.99995 * 3 2 1 6 6 C 1.53004 * 109.46596 * 184.99915 * 5 3 2 7 7 N 1.46904 * 109.47204 * 180.02562 * 6 5 3 8 8 C 1.46892 * 111.00131 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47114 * 324.99774 * 8 7 6 10 10 C 1.52997 * 109.47295 * 84.99918 * 8 7 6 11 11 C 1.50696 * 109.47167 * 204.99735 * 8 7 6 12 12 C 1.38300 * 119.93262 * 319.72911 * 11 8 7 13 13 C 1.38104 * 120.07247 * 179.72590 * 12 11 8 14 14 C 1.38880 * 119.92810 * 0.54158 * 13 12 11 15 15 O 1.35747 * 120.07174 * 179.75066 * 14 13 12 16 16 C 1.34825 * 117.00597 * 174.44425 * 15 14 13 17 17 H 1.08005 * 119.99735 * 5.05211 * 16 15 14 18 18 C 1.38651 * 120.00550 * 185.05478 * 16 15 14 19 19 N 1.31557 * 119.99702 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46906 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46956 * 120.00407 * 20 18 16 23 23 H 1.48504 * 109.47096 * 240.00135 * 20 18 16 24 24 C 1.38882 * 119.86199 * 359.72799 * 14 13 12 25 25 C 1.38098 * 119.93192 * 0.02562 * 24 14 13 26 26 H 1.09002 * 109.47460 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47323 * 300.00300 * 1 2 3 28 28 H 1.09003 * 109.47351 * 60.00174 * 1 2 3 29 29 H 1.08997 * 109.47122 * 296.05123 * 4 3 2 30 30 H 1.09004 * 109.47067 * 56.04902 * 4 3 2 31 31 H 1.08998 * 109.46900 * 176.04653 * 4 3 2 32 32 H 1.09002 * 109.47499 * 65.00231 * 5 3 2 33 33 H 1.08994 * 109.47268 * 304.99197 * 5 3 2 34 34 H 1.08995 * 109.47560 * 59.99808 * 6 5 3 35 35 H 1.09004 * 109.46743 * 299.99652 * 6 5 3 36 36 H 1.00903 * 110.99438 * 303.95610 * 7 6 5 37 37 H 1.09004 * 109.47560 * 180.02562 * 10 8 7 38 38 H 1.08998 * 109.47148 * 299.99944 * 10 8 7 39 39 H 1.08994 * 109.47650 * 59.99661 * 10 8 7 40 40 H 1.08005 * 119.96345 * 359.97438 * 12 11 8 41 41 H 1.08000 * 120.03674 * 180.27353 * 13 12 11 42 42 H 0.97001 * 120.00315 * 179.97438 * 19 18 16 43 43 H 1.07994 * 120.03671 * 179.97438 * 24 14 13 44 44 H 1.08000 * 119.97139 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3366 0.0000 4 6 2.7883 1.5726 -1.2321 5 6 2.8645 1.5385 1.1877 6 6 3.3673 2.9833 1.2170 7 7 4.2083 3.1852 2.4044 8 6 4.7106 4.5643 2.4654 9 1 4.9046 4.9254 1.4554 10 6 3.6651 5.4587 3.1348 11 6 5.9873 4.5990 3.2652 12 6 6.1057 3.8319 4.4098 13 6 7.2765 3.8571 5.1419 14 6 8.3316 4.6625 4.7336 15 8 9.4819 4.6935 5.4538 16 6 10.5060 5.4052 4.9415 17 1 10.3640 5.9842 4.0409 18 6 11.7415 5.3940 5.5707 19 7 11.9146 4.6883 6.6674 20 14 13.1604 6.3796 4.8605 21 1 12.7097 7.0809 3.6316 22 1 13.6188 7.3779 5.8598 23 1 14.2806 5.4639 4.5259 24 6 8.2077 5.4360 3.5868 25 6 7.0362 5.4025 2.8563 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.6286 0.8798 -1.2767 30 1 2.1422 1.4161 -2.0960 31 1 3.1610 2.5968 -1.2379 32 1 3.7156 0.8584 1.1506 33 1 2.2791 1.3394 2.0853 34 1 2.5164 3.6635 1.2540 35 1 3.9528 3.1825 0.3193 36 1 3.7080 2.9445 3.2469 37 1 4.0376 6.4821 3.1797 38 1 2.7417 5.4336 2.5563 39 1 3.4711 5.0976 4.1447 40 1 5.2830 3.2093 4.7294 41 1 7.3699 3.2544 6.0332 42 1 12.7790 4.6801 7.1075 43 1 9.0263 6.0637 3.2670 44 1 6.9393 6.0034 1.9642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850478950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:25 Heat of formation + Delta-G solvation = 4.988597 kcal Electronic energy + Delta-G solvation = -22843.740426 eV Core-core repulsion = 19378.063398 eV Total energy + Delta-G solvation = -3465.677028 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.20942 -38.15270 -37.33210 -35.83255 -34.22047 -32.26542 -31.05690 -30.12561 -28.07074 -27.62261 -26.84463 -25.37833 -24.52155 -22.57818 -21.92162 -21.18401 -20.00129 -17.91248 -17.28867 -16.96811 -16.16707 -15.94592 -15.44363 -14.98311 -14.84325 -14.46873 -14.19752 -13.92869 -13.72527 -13.54603 -13.52658 -13.30329 -12.91137 -12.71834 -12.52172 -12.45124 -12.22444 -12.10055 -11.85867 -11.65748 -11.35949 -11.18465 -11.11450 -10.67367 -10.58640 -10.44128 -10.39215 -10.27979 -9.28686 -9.05875 -8.80190 -8.41722 -8.11155 -7.10968 -6.41981 -4.00632 2.21008 2.28077 2.39084 3.13676 3.15252 3.20714 3.99022 4.14656 4.48198 4.62143 4.82211 4.96027 5.06110 5.12103 5.13243 5.16555 5.18618 5.26610 5.32137 5.34082 5.36368 5.40983 5.43135 5.51223 5.64431 5.70291 5.75256 5.79989 5.88083 5.98545 6.15523 6.26831 6.33105 6.47329 6.67889 6.75556 6.87022 7.01814 7.11617 7.33259 7.35245 7.46020 7.49521 7.88026 8.03461 9.03982 9.75465 10.76356 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.002397 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.758802 B =11680.793272 C =11760.028107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.267 6.267 3 N -0.368 5.368 4 C 0.005 3.995 5 C 0.042 3.958 6 C 0.066 3.934 7 N -0.678 5.678 8 C 0.144 3.856 9 H 0.076 0.924 10 C -0.176 4.176 11 C -0.167 4.167 12 C -0.053 4.053 13 C -0.194 4.194 14 C 0.153 3.847 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.233 4.233 25 C -0.068 4.068 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.340 0.660 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.269 0.731 43 H 0.125 0.875 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.721 -2.985 -12.423 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.271 6.271 3 N -0.137 5.137 4 C -0.143 4.143 5 C -0.087 4.087 6 C -0.064 4.064 7 N -0.309 5.309 8 C 0.035 3.965 9 H 0.094 0.906 10 C -0.235 4.235 11 C -0.169 4.169 12 C -0.072 4.072 13 C -0.213 4.213 14 C 0.100 3.900 15 O -0.084 6.084 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.252 4.252 25 C -0.087 4.087 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.159 0.841 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.143 0.857 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.185 -3.258 -12.337 23.041 hybrid contribution 0.460 0.538 -0.168 0.727 sum -18.724 -2.720 -12.505 22.680 Atomic orbital electron populations 1.22599 0.80767 1.01606 1.00506 1.90708 1.20738 1.18713 1.96908 1.67542 1.34452 1.08177 1.03518 1.22779 0.97473 1.02002 0.92076 1.22345 0.96164 0.97342 0.92805 1.21906 0.95504 0.94049 0.94980 1.60526 1.40990 1.24707 1.04715 1.20166 0.92154 0.86041 0.98174 0.90622 1.22498 0.98565 1.01473 1.00988 1.19048 0.95515 1.03772 0.98555 1.20308 0.95967 0.97024 0.93859 1.20212 0.93512 1.04264 1.03359 1.19392 0.87957 0.92612 0.90066 1.83976 1.17654 1.63797 1.42960 1.21359 0.87991 1.26244 1.11050 0.89087 1.25284 0.97771 0.97553 0.96023 1.70049 1.24468 1.38297 1.17094 0.85654 0.80112 0.78898 0.78794 1.19143 1.20204 1.20171 1.21106 0.99348 1.05903 0.98892 1.20534 0.92576 0.97466 0.98090 0.89483 0.93733 0.93882 0.93944 0.90779 0.89086 0.92466 0.90118 0.94333 0.90727 0.84097 0.91762 0.93322 0.92293 0.87371 0.86714 0.92138 0.85684 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 11.51 101.05 1.16 1.49 16 2 O -0.27 -2.94 10.96 -13.93 -0.15 -3.09 16 3 N -0.37 -3.71 5.14 -121.14 -0.62 -4.33 16 4 C 0.01 0.04 9.77 60.06 0.59 0.63 16 5 C 0.04 0.42 5.78 -3.82 -0.02 0.40 16 6 C 0.07 0.64 5.28 -3.82 -0.02 0.62 16 7 N -0.68 -7.83 5.71 -107.95 -0.62 -8.45 16 8 C 0.14 1.82 2.79 -68.87 -0.19 1.63 16 9 H 0.08 0.93 7.66 -51.92 -0.40 0.53 16 10 C -0.18 -1.94 9.14 37.16 0.34 -1.60 16 11 C -0.17 -2.78 4.96 -104.57 -0.52 -3.30 16 12 C -0.05 -0.94 9.31 -39.61 -0.37 -1.31 16 13 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 14 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 15 O -0.18 -5.20 9.76 0.07 0.00 -5.20 16 16 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 17 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 18 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 19 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 20 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 C -0.23 -5.09 9.17 -39.39 -0.36 -5.45 16 25 C -0.07 -1.23 9.66 -39.61 -0.38 -1.62 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.65 6.33 -51.93 -0.33 0.33 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.36 7.44 -51.93 -0.39 -0.03 16 35 H 0.07 0.72 6.34 -51.93 -0.33 0.40 16 36 H 0.34 3.61 7.82 -39.29 -0.31 3.30 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 39 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 40 H 0.11 1.62 7.25 -52.48 -0.38 1.24 16 41 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 43 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 44 H 0.10 1.60 8.03 -52.49 -0.42 1.18 16 LS Contribution 363.88 15.07 5.48 5.48 Total: -1.00 -31.56 363.88 -7.27 -38.83 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.87 Total: 5.23 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -0.23 Total: -19.33 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.48 Total: -37.60 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.15 Total: -8.29 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.56 -7.27 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850478950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.819 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds