Wall clock time and date at job start Tue Mar 31 2020 07:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.46306 * 113.99664 * 2 1 4 4 C 1.46895 * 110.99796 * 243.95083 * 3 2 1 5 5 C 1.46899 * 110.99401 * 119.99995 * 3 2 1 6 6 C 1.53004 * 109.46596 * 184.99915 * 5 3 2 7 7 N 1.46904 * 109.47204 * 180.02562 * 6 5 3 8 8 C 1.46892 * 111.00131 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47114 * 324.99774 * 8 7 6 10 10 C 1.52997 * 109.47295 * 84.99918 * 8 7 6 11 11 C 1.50696 * 109.47167 * 204.99735 * 8 7 6 12 12 C 1.38300 * 119.93262 * 319.72911 * 11 8 7 13 13 C 1.38104 * 120.07247 * 179.72590 * 12 11 8 14 14 C 1.38880 * 119.92810 * 0.54158 * 13 12 11 15 15 O 1.35747 * 120.07174 * 179.75066 * 14 13 12 16 16 C 1.34825 * 117.00597 * 174.44425 * 15 14 13 17 17 H 1.08005 * 119.99735 * 5.05211 * 16 15 14 18 18 C 1.38651 * 120.00550 * 185.05478 * 16 15 14 19 19 N 1.31557 * 119.99702 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46906 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46956 * 120.00407 * 20 18 16 23 23 H 1.48504 * 109.47096 * 240.00135 * 20 18 16 24 24 C 1.38882 * 119.86199 * 359.72799 * 14 13 12 25 25 C 1.38098 * 119.93192 * 0.02562 * 24 14 13 26 26 H 1.09002 * 109.47460 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47323 * 300.00300 * 1 2 3 28 28 H 1.09003 * 109.47351 * 60.00174 * 1 2 3 29 29 H 1.08997 * 109.47122 * 296.05123 * 4 3 2 30 30 H 1.09004 * 109.47067 * 56.04902 * 4 3 2 31 31 H 1.08998 * 109.46900 * 176.04653 * 4 3 2 32 32 H 1.09002 * 109.47499 * 65.00231 * 5 3 2 33 33 H 1.08994 * 109.47268 * 304.99197 * 5 3 2 34 34 H 1.08995 * 109.47560 * 59.99808 * 6 5 3 35 35 H 1.09004 * 109.46743 * 299.99652 * 6 5 3 36 36 H 1.00903 * 110.99438 * 303.95610 * 7 6 5 37 37 H 1.09004 * 109.47560 * 180.02562 * 10 8 7 38 38 H 1.08998 * 109.47148 * 299.99944 * 10 8 7 39 39 H 1.08994 * 109.47650 * 59.99661 * 10 8 7 40 40 H 1.08005 * 119.96345 * 359.97438 * 12 11 8 41 41 H 1.08000 * 120.03674 * 180.27353 * 13 12 11 42 42 H 0.97001 * 120.00315 * 179.97438 * 19 18 16 43 43 H 1.07994 * 120.03671 * 179.97438 * 24 14 13 44 44 H 1.08000 * 119.97139 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3366 0.0000 4 6 2.7883 1.5726 -1.2321 5 6 2.8645 1.5385 1.1877 6 6 3.3673 2.9833 1.2170 7 7 4.2083 3.1852 2.4044 8 6 4.7106 4.5643 2.4654 9 1 4.9046 4.9254 1.4554 10 6 3.6651 5.4587 3.1348 11 6 5.9873 4.5990 3.2652 12 6 6.1057 3.8319 4.4098 13 6 7.2765 3.8571 5.1419 14 6 8.3316 4.6625 4.7336 15 8 9.4819 4.6935 5.4538 16 6 10.5060 5.4052 4.9415 17 1 10.3640 5.9842 4.0409 18 6 11.7415 5.3940 5.5707 19 7 11.9146 4.6883 6.6674 20 14 13.1604 6.3796 4.8605 21 1 12.7097 7.0809 3.6316 22 1 13.6188 7.3779 5.8598 23 1 14.2806 5.4639 4.5259 24 6 8.2077 5.4360 3.5868 25 6 7.0362 5.4025 2.8563 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.6286 0.8798 -1.2767 30 1 2.1422 1.4161 -2.0960 31 1 3.1610 2.5968 -1.2379 32 1 3.7156 0.8584 1.1506 33 1 2.2791 1.3394 2.0853 34 1 2.5164 3.6635 1.2540 35 1 3.9528 3.1825 0.3193 36 1 3.7080 2.9445 3.2469 37 1 4.0376 6.4821 3.1797 38 1 2.7417 5.4336 2.5563 39 1 3.4711 5.0976 4.1447 40 1 5.2830 3.2093 4.7294 41 1 7.3699 3.2544 6.0332 42 1 12.7790 4.6801 7.1075 43 1 9.0263 6.0637 3.2670 44 1 6.9393 6.0034 1.9642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850478950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:24 Heat of formation + Delta-G solvation = -16.876459 kcal Electronic energy + Delta-G solvation = -22844.688566 eV Core-core repulsion = 19378.063398 eV Total energy + Delta-G solvation = -3466.625168 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82528 -39.27140 -38.45660 -37.06394 -35.13004 -34.22169 -32.14528 -31.69650 -29.44411 -28.45530 -27.47157 -27.34065 -25.31832 -23.97585 -23.38479 -22.04924 -21.41451 -19.73697 -18.80654 -18.03148 -17.09893 -16.81049 -16.50502 -16.34060 -16.03959 -15.85513 -15.51963 -15.36178 -15.16421 -14.67422 -14.48088 -14.35216 -14.15775 -13.94399 -13.90662 -13.51141 -13.32252 -13.11592 -12.95332 -12.91059 -12.61928 -12.45204 -12.32061 -12.10357 -12.03964 -11.86888 -11.66010 -11.12679 -10.99295 -10.77326 -9.81391 -9.71723 -9.31628 -8.82670 -8.45531 -6.13273 0.65946 0.76145 1.35121 1.43687 1.52353 1.53673 2.18708 2.84241 3.15395 3.35474 3.56717 3.75638 3.99015 4.10267 4.12512 4.19179 4.25904 4.41055 4.44306 4.47779 4.53489 4.61382 4.63676 4.65306 4.69975 4.75644 4.83131 4.86176 4.88484 4.93433 5.03111 5.05181 5.14804 5.19664 5.31903 5.34339 5.59504 5.64995 5.76048 5.82508 5.98095 6.05851 6.17501 6.30116 6.49814 6.99486 7.82454 8.78271 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.002397 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.758802 B =11680.793272 C =11760.028107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.293 6.293 3 N -0.369 5.369 4 C 0.003 3.997 5 C 0.047 3.953 6 C 0.075 3.925 7 N -0.690 5.690 8 C 0.148 3.852 9 H 0.090 0.910 10 C -0.171 4.171 11 C -0.141 4.141 12 C -0.047 4.047 13 C -0.208 4.208 14 C 0.109 3.891 15 O -0.236 6.236 16 C -0.411 4.411 17 H 0.101 0.899 18 C -0.027 4.027 19 N -0.923 5.923 20 Si 1.020 2.980 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.269 1.269 24 C -0.242 4.242 25 C -0.068 4.068 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.347 0.653 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.142 0.858 41 H 0.108 0.892 42 H 0.272 0.728 43 H 0.116 0.884 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.245 -2.077 -15.010 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.297 6.297 3 N -0.139 5.139 4 C -0.145 4.145 5 C -0.082 4.082 6 C -0.054 4.054 7 N -0.323 5.323 8 C 0.039 3.961 9 H 0.108 0.892 10 C -0.230 4.230 11 C -0.142 4.142 12 C -0.065 4.065 13 C -0.227 4.227 14 C 0.059 3.941 15 O -0.143 6.143 16 C -0.487 4.487 17 H 0.118 0.882 18 C -0.223 4.223 19 N -0.562 5.562 20 Si 0.839 3.161 21 H -0.174 1.174 22 H -0.193 1.193 23 H -0.194 1.194 24 C -0.262 4.262 25 C -0.086 4.086 26 H 0.122 0.878 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.167 0.833 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.159 0.841 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.781 -2.360 -14.957 26.528 hybrid contribution 0.851 0.158 0.494 0.997 sum -20.930 -2.202 -14.463 25.536 Atomic orbital electron populations 1.22764 0.79239 1.02878 1.00873 1.90684 1.22503 1.19522 1.97022 1.67583 1.34520 1.07832 1.03938 1.22875 0.97204 1.02600 0.91840 1.22273 0.95481 0.97269 0.93156 1.21832 0.95632 0.93839 0.94113 1.60398 1.42163 1.23877 1.05825 1.20131 0.90468 0.87281 0.98228 0.89173 1.22431 0.98814 1.00625 1.01147 1.19649 0.96625 1.00513 0.97431 1.20676 0.95282 0.97016 0.93509 1.20468 0.94283 1.04064 1.03875 1.19942 0.87733 0.94810 0.91645 1.83937 1.19232 1.65958 1.45196 1.21848 0.88646 1.26589 1.11596 0.88169 1.26607 1.00606 0.98794 0.96341 1.70197 1.25471 1.41177 1.19306 0.84516 0.75801 0.77274 0.78516 1.17427 1.19329 1.19428 1.21214 1.00755 1.05575 0.98623 1.20929 0.91333 0.97726 0.98624 0.87842 0.93540 0.93256 0.94942 0.89939 0.87532 0.94381 0.90004 0.92922 0.90382 0.83345 0.92077 0.90993 0.92392 0.84072 0.87376 0.91930 0.86589 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 11.51 113.37 1.30 1.83 16 2 O -0.29 -5.99 10.96 -50.17 -0.55 -6.54 16 3 N -0.37 -6.60 5.14 -537.16 -2.76 -9.36 16 4 C 0.00 0.04 9.77 127.69 1.25 1.29 16 5 C 0.05 0.83 5.78 86.30 0.50 1.33 16 6 C 0.08 1.17 5.28 86.30 0.46 1.62 16 7 N -0.69 -13.21 5.71 -495.45 -2.83 -16.03 16 8 C 0.15 3.08 2.79 44.17 0.12 3.21 16 9 H 0.09 1.72 7.66 -2.38 -0.02 1.70 16 10 C -0.17 -2.97 9.14 71.98 0.66 -2.31 16 11 C -0.14 -4.24 4.96 -19.83 -0.10 -4.34 16 12 C -0.05 -1.56 9.31 22.25 0.21 -1.35 16 13 C -0.21 -9.05 9.99 22.39 0.22 -8.82 16 14 C 0.11 5.53 6.65 22.58 0.15 5.68 16 15 O -0.24 -14.55 9.76 -22.65 -0.22 -14.78 16 16 C -0.41 -24.37 9.49 67.92 0.64 -23.73 16 17 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 18 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 19 N -0.92 -57.67 13.67 21.61 0.30 -57.38 16 20 Si 1.02 43.57 29.55 68.60 2.03 45.60 16 21 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 C -0.24 -10.67 9.17 22.39 0.21 -10.47 16 25 C -0.07 -2.30 9.66 22.25 0.21 -2.09 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.11 1.19 6.33 -2.39 -0.02 1.18 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 0.71 7.44 -2.39 -0.02 0.70 16 35 H 0.08 1.19 6.34 -2.39 -0.02 1.18 16 36 H 0.35 5.96 7.82 -89.69 -0.70 5.26 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.07 0.97 7.45 -2.39 -0.02 0.95 16 39 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 40 H 0.14 3.78 7.25 -2.91 -0.02 3.76 16 41 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 43 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 44 H 0.14 3.74 8.03 -2.91 -0.02 3.72 16 Total: -1.00 -73.58 363.88 2.55 -71.03 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.29 Total: 26.70 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 6.30 Total: -39.23 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -5.29 Total: -82.77 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.77 Total: -21.32 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -73.58 2.55 -71.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850478950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.149 kcal (2) G-P(sol) polarization free energy of solvation -73.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds