Wall clock time and date at job start Tue Mar 31 2020 07:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46604 * 2 1 4 4 C 1.34221 * 125.74423 * 125.33627 * 3 2 1 5 5 C 1.38117 * 107.41058 * 180.11544 * 4 3 2 6 6 C 1.47286 * 126.42854 * 179.83495 * 5 4 3 7 7 O 1.21530 * 120.00193 * 179.41971 * 6 5 4 8 8 O 1.34754 * 119.99971 * 359.69013 * 6 5 4 9 9 C 1.45198 * 117.00246 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47372 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.46881 * 299.99710 * 10 9 8 12 12 C 1.53004 * 109.47087 * 60.00141 * 10 9 8 13 13 C 1.53005 * 109.47151 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.47035 * 179.97438 * 13 10 9 15 15 H 1.08003 * 119.99896 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99998 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99791 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99799 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46937 * 89.99954 * 18 16 14 20 20 H 1.48496 * 109.46888 * 209.99889 * 18 16 14 21 21 H 1.48497 * 109.47175 * 329.99898 * 18 16 14 22 22 C 1.41350 * 107.14620 * 359.57784 * 5 4 3 23 23 C 1.50701 * 125.99311 * 180.28365 * 22 5 4 24 24 N 1.30425 * 108.00767 * 0.25820 * 22 5 4 25 25 H 1.08999 * 109.47216 * 299.99817 * 1 2 3 26 26 H 1.08997 * 109.47568 * 60.00530 * 1 2 3 27 27 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46793 * 240.00003 * 2 1 3 29 29 H 1.08996 * 109.46847 * 119.99621 * 2 1 3 30 30 H 1.08009 * 126.29296 * 359.96096 * 4 3 2 31 31 H 1.09011 * 109.47161 * 300.00458 * 9 8 6 32 32 H 1.09003 * 109.47123 * 59.99778 * 9 8 6 33 33 H 1.08999 * 109.47112 * 60.00064 * 11 10 9 34 34 H 1.09005 * 109.46789 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47402 * 299.99898 * 11 10 9 36 36 H 1.08994 * 109.47403 * 59.99877 * 12 10 9 37 37 H 1.08996 * 109.46737 * 180.02562 * 12 10 9 38 38 H 1.08999 * 109.46845 * 299.99899 * 12 10 9 39 39 H 1.08994 * 109.47204 * 300.00040 * 13 10 9 40 40 H 1.09006 * 109.46916 * 60.00417 * 13 10 9 41 41 H 0.97003 * 119.99524 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.46952 * 89.99682 * 23 22 5 43 43 H 1.08999 * 109.46467 * 209.99916 * 23 22 5 44 44 H 1.09000 * 109.46837 * 329.99611 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8736 1.9105 0.8887 5 6 3.0716 3.2311 0.5358 6 6 3.9325 4.2027 1.2316 7 8 4.0294 5.3390 0.8114 8 8 4.6170 3.8303 2.3309 9 6 5.4452 4.8401 2.9654 10 6 6.1398 4.2360 4.1875 11 6 5.0860 3.7428 5.1810 12 6 7.0155 3.0610 3.7475 13 6 7.0130 5.3000 4.8557 14 6 7.6966 4.7051 6.0598 15 1 7.5257 3.6714 6.3220 16 6 8.5402 5.4804 6.8268 17 7 9.1364 4.9614 7.8778 18 14 8.8352 7.2685 6.3736 19 1 7.8321 8.1242 7.0568 20 1 10.2001 7.6686 6.8005 21 1 8.7079 7.4341 4.9034 22 6 2.2976 3.4736 -0.6218 23 6 2.2062 4.7795 -1.3686 24 7 1.6769 2.3689 -0.9306 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3224 1.3986 1.7272 31 1 6.1963 5.1913 2.2577 32 1 4.8215 5.6774 3.2785 33 1 4.4643 2.9847 4.7048 34 1 5.5809 3.3120 6.0515 35 1 4.4622 4.5799 5.4945 36 1 7.7662 3.4124 3.0397 37 1 7.5099 2.6304 4.6182 38 1 6.3937 2.3030 3.2712 39 1 7.7637 5.6510 4.1477 40 1 6.3895 6.1373 5.1692 41 1 9.7296 5.5070 8.4176 42 1 2.9775 4.8128 -2.1379 43 1 1.2244 4.8635 -1.8344 44 1 2.3505 5.6064 -0.6733 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860735688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:16 Heat of formation + Delta-G solvation = -33.455109 kcal Electronic energy + Delta-G solvation = -23686.429666 eV Core-core repulsion = 20219.085593 eV Total energy + Delta-G solvation = -3467.344073 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66124 -39.77522 -37.16922 -35.43620 -35.01851 -32.30187 -31.76272 -30.49400 -28.16243 -27.84169 -26.43917 -26.43843 -24.19738 -22.91373 -22.16966 -20.78849 -19.62955 -18.22105 -17.55401 -16.93018 -16.73804 -16.23101 -15.71129 -15.61964 -14.59330 -14.39483 -14.18011 -13.78929 -13.67652 -13.41323 -13.21023 -13.02330 -12.67399 -12.50576 -12.42117 -12.37084 -12.24804 -12.06413 -11.81778 -11.32264 -11.05287 -11.04795 -10.97211 -10.58306 -10.43054 -10.27989 -10.21698 -9.82344 -9.71999 -9.60019 -9.50179 -8.98469 -8.92132 -8.53141 -6.03661 -4.00888 1.24739 1.91507 2.00285 3.05480 3.25125 3.31858 3.39840 3.43645 3.97962 4.43620 4.46001 4.47403 4.54450 4.72164 4.89824 5.13986 5.23757 5.28737 5.29298 5.33215 5.45926 5.46873 5.55010 5.62557 5.74010 5.75206 5.82040 6.01859 6.13134 6.28799 6.31085 6.48891 6.53855 6.60544 6.68123 6.83834 6.96580 7.07127 7.10154 7.22033 7.34653 7.36906 7.77721 8.10092 8.53997 9.00811 9.58719 11.09056 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.003158 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.147731 B = 8864.119435 C = 9660.022530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.360 5.360 4 C 0.130 3.870 5 C -0.277 4.277 6 C 0.538 3.462 7 O -0.519 6.519 8 O -0.350 6.350 9 C 0.080 3.920 10 C -0.049 4.049 11 C -0.127 4.127 12 C -0.126 4.126 13 C -0.004 4.004 14 C -0.509 4.509 15 H 0.080 0.920 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.874 3.126 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.136 3.864 23 C -0.079 4.079 24 N -0.301 5.301 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.193 0.807 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.018 0.982 40 H 0.014 0.986 41 H 0.262 0.738 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.136 -9.466 -16.487 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.138 5.138 4 C -0.022 4.022 5 C -0.290 4.290 6 C 0.383 3.617 7 O -0.409 6.409 8 O -0.266 6.266 9 C 0.006 3.994 10 C -0.049 4.049 11 C -0.184 4.184 12 C -0.184 4.184 13 C -0.041 4.041 14 C -0.547 4.547 15 H 0.098 0.902 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.702 3.298 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.032 4.032 23 C -0.137 4.137 24 N -0.123 5.123 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.210 0.790 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.823 -9.816 -17.248 26.016 hybrid contribution 0.926 1.405 0.555 1.771 sum -15.897 -8.412 -16.693 24.538 Atomic orbital electron populations 1.22058 0.93353 1.03134 1.03827 1.21867 0.96503 0.76696 1.04437 1.48559 1.33993 1.10635 1.20577 1.23349 0.90998 0.93619 0.94248 1.19428 1.11915 0.94071 1.03623 1.19963 0.77376 0.85880 0.78506 1.90784 1.63291 1.20871 1.65948 1.86515 1.56193 1.44412 1.39455 1.23455 0.92170 0.89150 0.94599 1.20573 0.95291 0.97513 0.91530 1.21721 0.97398 0.99950 0.99314 1.21717 0.98413 0.96906 1.01323 1.19628 0.94384 0.93683 0.96396 1.21044 1.25702 0.99434 1.08505 0.90245 1.24987 0.95504 0.98130 0.94780 1.69899 1.30761 1.36611 1.16993 0.86868 0.77504 0.85982 0.79491 1.20336 1.21453 1.19007 1.22484 0.92465 0.95201 0.93041 1.20372 1.02695 0.90701 0.99980 1.77140 1.24883 0.96617 1.13668 0.91858 0.90959 0.90403 0.89227 0.87977 0.79038 0.91662 0.91673 0.94082 0.91105 0.93808 0.93801 0.91104 0.94085 0.96346 0.96803 0.92776 0.90070 0.90913 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.09 37.16 0.37 -0.50 16 2 C 0.13 0.70 7.21 -4.04 -0.03 0.67 16 3 N -0.36 -3.51 3.65 -60.79 -0.22 -3.73 16 4 C 0.13 1.35 11.28 -16.55 -0.19 1.17 16 5 C -0.28 -3.72 6.13 -105.08 -0.64 -4.36 16 6 C 0.54 8.53 7.95 34.41 0.27 8.80 16 7 O -0.52 -9.26 14.71 -19.29 -0.28 -9.55 16 8 O -0.35 -5.64 8.71 -40.64 -0.35 -5.99 16 9 C 0.08 1.41 4.33 37.16 0.16 1.57 16 10 C -0.05 -0.95 0.61 -154.51 -0.09 -1.04 16 11 C -0.13 -2.33 8.08 37.16 0.30 -2.03 16 12 C -0.13 -2.33 8.08 37.16 0.30 -2.03 16 13 C 0.00 -0.08 3.11 -27.88 -0.09 -0.17 16 14 C -0.51 -13.75 8.21 -34.44 -0.28 -14.03 16 15 H 0.08 2.27 5.92 -52.48 -0.31 1.96 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 18 Si 0.87 21.53 27.47 -169.99 -4.67 16.87 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 22 C 0.14 1.74 7.27 -82.01 -0.60 1.14 16 23 C -0.08 -0.86 9.92 36.01 0.36 -0.50 16 24 N -0.30 -3.66 12.33 33.90 0.42 -3.25 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.32 8.06 -51.93 -0.42 -0.10 16 30 H 0.19 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 34 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 38 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 39 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 1.15 6.56 -51.93 -0.34 0.81 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -32.74 360.99 -6.29 -39.02 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.14 Total: -2.80 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.25 Total: -9.51 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.97 Total: -33.48 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.64 Total: -15.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.74 -6.29 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860735688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.566 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds