Wall clock time and date at job start Tue Mar 31 2020 07:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46604 * 2 1 4 4 C 1.34221 * 125.74423 * 125.33627 * 3 2 1 5 5 C 1.38117 * 107.41058 * 180.11544 * 4 3 2 6 6 C 1.47286 * 126.42854 * 179.83495 * 5 4 3 7 7 O 1.21530 * 120.00193 * 179.41971 * 6 5 4 8 8 O 1.34754 * 119.99971 * 359.69013 * 6 5 4 9 9 C 1.45198 * 117.00246 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47372 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.46881 * 299.99710 * 10 9 8 12 12 C 1.53004 * 109.47087 * 60.00141 * 10 9 8 13 13 C 1.53005 * 109.47151 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.47035 * 179.97438 * 13 10 9 15 15 H 1.08003 * 119.99896 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99998 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99791 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99799 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46937 * 89.99954 * 18 16 14 20 20 H 1.48496 * 109.46888 * 209.99889 * 18 16 14 21 21 H 1.48497 * 109.47175 * 329.99898 * 18 16 14 22 22 C 1.41350 * 107.14620 * 359.57784 * 5 4 3 23 23 C 1.50701 * 125.99311 * 180.28365 * 22 5 4 24 24 N 1.30425 * 108.00767 * 0.25820 * 22 5 4 25 25 H 1.08999 * 109.47216 * 299.99817 * 1 2 3 26 26 H 1.08997 * 109.47568 * 60.00530 * 1 2 3 27 27 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46793 * 240.00003 * 2 1 3 29 29 H 1.08996 * 109.46847 * 119.99621 * 2 1 3 30 30 H 1.08009 * 126.29296 * 359.96096 * 4 3 2 31 31 H 1.09011 * 109.47161 * 300.00458 * 9 8 6 32 32 H 1.09003 * 109.47123 * 59.99778 * 9 8 6 33 33 H 1.08999 * 109.47112 * 60.00064 * 11 10 9 34 34 H 1.09005 * 109.46789 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47402 * 299.99898 * 11 10 9 36 36 H 1.08994 * 109.47403 * 59.99877 * 12 10 9 37 37 H 1.08996 * 109.46737 * 180.02562 * 12 10 9 38 38 H 1.08999 * 109.46845 * 299.99899 * 12 10 9 39 39 H 1.08994 * 109.47204 * 300.00040 * 13 10 9 40 40 H 1.09006 * 109.46916 * 60.00417 * 13 10 9 41 41 H 0.97003 * 119.99524 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.46952 * 89.99682 * 23 22 5 43 43 H 1.08999 * 109.46467 * 209.99916 * 23 22 5 44 44 H 1.09000 * 109.46837 * 329.99611 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8736 1.9105 0.8887 5 6 3.0716 3.2311 0.5358 6 6 3.9325 4.2027 1.2316 7 8 4.0294 5.3390 0.8114 8 8 4.6170 3.8303 2.3309 9 6 5.4452 4.8401 2.9654 10 6 6.1398 4.2360 4.1875 11 6 5.0860 3.7428 5.1810 12 6 7.0155 3.0610 3.7475 13 6 7.0130 5.3000 4.8557 14 6 7.6966 4.7051 6.0598 15 1 7.5257 3.6714 6.3220 16 6 8.5402 5.4804 6.8268 17 7 9.1364 4.9614 7.8778 18 14 8.8352 7.2685 6.3736 19 1 7.8321 8.1242 7.0568 20 1 10.2001 7.6686 6.8005 21 1 8.7079 7.4341 4.9034 22 6 2.2976 3.4736 -0.6218 23 6 2.2062 4.7795 -1.3686 24 7 1.6769 2.3689 -0.9306 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3224 1.3986 1.7272 31 1 6.1963 5.1913 2.2577 32 1 4.8215 5.6774 3.2785 33 1 4.4643 2.9847 4.7048 34 1 5.5809 3.3120 6.0515 35 1 4.4622 4.5799 5.4945 36 1 7.7662 3.4124 3.0397 37 1 7.5099 2.6304 4.6182 38 1 6.3937 2.3030 3.2712 39 1 7.7637 5.6510 4.1477 40 1 6.3895 6.1373 5.1692 41 1 9.7296 5.5070 8.4176 42 1 2.9775 4.8128 -2.1379 43 1 1.2244 4.8635 -1.8344 44 1 2.3505 5.6064 -0.6733 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860735688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:16 Heat of formation + Delta-G solvation = -52.102476 kcal Electronic energy + Delta-G solvation = -23687.238276 eV Core-core repulsion = 20219.085593 eV Total energy + Delta-G solvation = -3468.152683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.52649 -41.01737 -38.64564 -36.78900 -35.74330 -34.38467 -32.49798 -31.39179 -29.87203 -28.85568 -27.94169 -27.79461 -25.20508 -24.29829 -23.26274 -21.80984 -20.57022 -19.74101 -18.88308 -18.62115 -17.84799 -17.39332 -16.72069 -16.49101 -16.20826 -15.45643 -15.39554 -15.20094 -14.94985 -14.66488 -14.23961 -14.12214 -13.95644 -13.94815 -13.67514 -13.20535 -13.06281 -12.99814 -12.85454 -12.83934 -12.65092 -12.36460 -12.25882 -12.10716 -11.86689 -11.80900 -11.72927 -11.44531 -11.29245 -11.13190 -10.90555 -10.69982 -10.42264 -9.80999 -8.21731 -6.22217 0.34908 0.96341 1.29693 1.37007 1.39577 1.49553 1.85493 2.16313 2.39804 3.13448 3.26526 3.70992 3.91553 3.94185 3.98367 4.05125 4.08172 4.21201 4.25657 4.37230 4.44929 4.62056 4.62427 4.71770 4.73156 4.79239 4.79583 4.93407 4.99084 5.03272 5.03767 5.14306 5.23647 5.29831 5.40310 5.40657 5.43858 5.56354 5.59726 5.68052 5.77714 5.85297 6.38541 6.48314 6.83805 6.89351 7.40247 8.93883 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.003158 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.147731 B = 8864.119435 C = 9660.022530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 N -0.352 5.352 4 C 0.149 3.851 5 C -0.311 4.311 6 C 0.539 3.461 7 O -0.546 6.546 8 O -0.344 6.344 9 C 0.089 3.911 10 C -0.047 4.047 11 C -0.121 4.121 12 C -0.121 4.121 13 C -0.004 4.004 14 C -0.502 4.502 15 H 0.053 0.947 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.251 1.251 22 C 0.124 3.876 23 C -0.077 4.077 24 N -0.318 5.318 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.135 0.865 30 H 0.224 0.776 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.263 0.737 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.424 -10.445 -17.904 27.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.004 4.004 3 N -0.129 5.129 4 C -0.005 4.005 5 C -0.324 4.324 6 C 0.386 3.614 7 O -0.438 6.438 8 O -0.260 6.260 9 C 0.015 3.985 10 C -0.047 4.047 11 C -0.178 4.178 12 C -0.178 4.178 13 C -0.042 4.042 14 C -0.540 4.540 15 H 0.071 0.929 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.214 1.214 21 H -0.175 1.175 22 C -0.044 4.044 23 C -0.135 4.135 24 N -0.140 5.140 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.153 0.847 30 H 0.241 0.759 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.145 -10.821 -18.696 28.211 hybrid contribution 1.236 1.528 0.967 2.191 sum -16.909 -9.292 -17.728 26.202 Atomic orbital electron populations 1.22031 0.93207 1.04354 1.02365 1.22347 0.96655 0.74696 1.06731 1.48975 1.32997 1.11500 1.19431 1.23769 0.89857 0.92592 0.94317 1.19424 1.13231 0.95092 1.04650 1.20349 0.77057 0.86060 0.77983 1.90770 1.64325 1.22156 1.66588 1.86487 1.56119 1.43570 1.39784 1.23128 0.92309 0.89209 0.93853 1.20442 0.95276 0.96691 0.92332 1.21650 0.97223 1.00600 0.98327 1.21647 0.98596 0.97161 1.00378 1.19585 0.94777 0.94760 0.95040 1.21312 1.24993 0.98373 1.09322 0.92918 1.25819 0.95728 1.02549 0.94866 1.70038 1.32230 1.38363 1.18587 0.85903 0.77396 0.80854 0.79994 1.19608 1.21388 1.17462 1.22729 0.92522 0.95893 0.93212 1.20358 1.03788 0.89706 0.99672 1.77106 1.25189 0.96990 1.14729 0.92805 0.92869 0.87861 0.87973 0.84673 0.75927 0.91878 0.91807 0.91274 0.93597 0.93757 0.93791 0.93588 0.91265 0.96439 0.96593 0.92798 0.89520 0.89389 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.09 71.98 0.73 -0.55 16 2 C 0.11 0.86 7.21 86.38 0.62 1.49 16 3 N -0.35 -5.88 3.65 -346.25 -1.26 -7.14 16 4 C 0.15 2.63 11.28 84.30 0.95 3.59 16 5 C -0.31 -7.80 6.13 -20.16 -0.12 -7.93 16 6 C 0.54 16.35 7.95 70.20 0.56 16.91 16 7 O -0.55 -19.25 14.71 19.74 0.29 -18.96 16 8 O -0.34 -10.31 8.71 -56.65 -0.49 -10.80 16 9 C 0.09 3.00 4.33 71.98 0.31 3.31 16 10 C -0.05 -1.77 0.61 -52.18 -0.03 -1.80 16 11 C -0.12 -4.29 8.08 71.98 0.58 -3.71 16 12 C -0.12 -4.29 8.08 71.98 0.58 -3.71 16 13 C 0.00 -0.19 3.11 29.85 0.09 -0.10 16 14 C -0.50 -27.44 8.21 25.60 0.21 -27.23 16 15 H 0.05 3.11 5.92 -2.91 -0.02 3.09 16 16 C 0.01 0.38 5.47 84.66 0.46 0.85 16 17 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 18 Si 0.93 44.26 27.47 68.60 1.88 46.15 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 22 C 0.12 3.03 7.27 43.53 0.32 3.35 16 23 C -0.08 -1.64 9.92 71.24 0.71 -0.93 16 24 N -0.32 -7.21 12.33 -46.65 -0.58 -7.79 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.14 0.18 8.06 -2.39 -0.02 0.16 16 30 H 0.22 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.07 2.04 7.68 -2.39 -0.02 2.02 16 34 H 0.04 1.84 6.62 -2.38 -0.02 1.83 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 38 H 0.07 2.04 7.68 -2.39 -0.02 2.02 16 39 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 40 H 0.02 0.72 7.57 -2.38 -0.02 0.70 16 41 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.96 6.56 -2.39 -0.02 1.94 16 Total: -1.00 -71.74 360.99 7.03 -64.71 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.92 Total: 8.64 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 5.97 Total: -16.47 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -1.54 Total: -73.28 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.20 Total: -29.76 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -71.74 7.03 -64.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860735688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.612 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds