Wall clock time and date at job start Tue Mar 31 2020 07:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46903 * 2 1 4 4 N 1.39932 * 125.74487 * 269.97317 * 3 2 1 5 5 C 1.30431 * 108.91517 * 180.02562 * 4 3 2 6 6 C 1.41334 * 108.01877 * 359.97438 * 5 4 3 7 7 C 1.47288 * 126.42982 * 179.97438 * 6 5 4 8 8 O 1.21527 * 120.00119 * 180.02562 * 7 6 5 9 9 O 1.34757 * 119.99787 * 0.02669 * 7 6 5 10 10 C 1.45195 * 116.99703 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46873 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46786 * 299.99582 * 11 10 9 13 13 C 1.52996 * 109.47284 * 60.00027 * 11 10 9 14 14 C 1.53005 * 109.46842 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.46605 * 179.97438 * 14 11 10 16 16 H 1.07998 * 120.00677 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99491 * 179.97438 * 15 14 11 18 18 N 1.31519 * 119.99548 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00501 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46923 * 89.99528 * 19 17 15 21 21 H 1.48493 * 109.47332 * 209.99981 * 19 17 15 22 22 H 1.48501 * 109.46854 * 330.00188 * 19 17 15 23 23 C 1.34231 * 125.74268 * 90.00119 * 3 2 1 24 24 C 1.50696 * 126.29226 * 0.23993 * 23 3 2 25 25 H 1.09000 * 109.47519 * 300.00309 * 1 2 3 26 26 H 1.09012 * 109.46968 * 59.99887 * 1 2 3 27 27 H 1.08998 * 109.47518 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47271 * 240.00367 * 2 1 3 29 29 H 1.08995 * 109.46874 * 120.00001 * 2 1 3 30 30 H 1.08009 * 125.98590 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.47352 * 299.99891 * 10 9 7 32 32 H 1.08997 * 109.47705 * 59.99906 * 10 9 7 33 33 H 1.08993 * 109.46811 * 60.00665 * 12 11 10 34 34 H 1.09007 * 109.46790 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.47344 * 299.99720 * 12 11 10 36 36 H 1.08996 * 109.47360 * 59.99804 * 13 11 10 37 37 H 1.08997 * 109.47289 * 180.02562 * 13 11 10 38 38 H 1.09007 * 109.46855 * 299.99832 * 13 11 10 39 39 H 1.08996 * 109.47151 * 299.99796 * 14 11 10 40 40 H 1.08999 * 109.47063 * 60.00656 * 14 11 10 41 41 H 0.97002 * 119.99561 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.47149 * 269.71404 * 24 23 3 43 43 H 1.09001 * 109.47680 * 29.71290 * 24 23 3 44 44 H 1.09005 * 109.47158 * 149.71511 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2912 2.1518 -1.1357 5 6 2.7077 3.3287 -0.7581 6 6 2.7166 3.3567 0.6549 7 6 3.1181 4.4907 1.5048 8 8 3.0807 4.3862 2.7150 9 8 3.5269 5.6440 0.9404 10 6 3.9080 6.7188 1.8391 11 6 4.3407 7.9378 1.0218 12 6 5.5336 7.5631 0.1400 13 6 3.1789 8.3986 0.1394 14 6 4.7417 9.0706 1.9689 15 6 5.1684 10.2709 1.1638 16 1 5.1545 10.2301 0.0846 17 6 5.5755 11.4217 1.8050 18 7 5.9474 12.4694 1.1024 19 14 5.5988 11.4927 3.6714 20 1 6.9247 11.0438 4.1673 21 1 5.3499 12.8871 4.1169 22 1 4.5405 10.6033 4.2138 23 6 2.2796 2.1205 1.0895 24 6 2.1296 1.6806 2.5230 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.9945 4.1400 -1.4109 31 1 3.0583 6.9854 2.4677 32 1 4.7360 6.3907 2.4675 33 1 5.2474 6.7563 -0.5347 34 1 5.8421 8.4317 -0.4420 35 1 6.3613 7.2349 0.7687 36 1 2.3291 8.6655 0.7676 37 1 3.4872 9.2667 -0.4432 38 1 2.8928 7.5917 -0.5353 39 1 3.8916 9.3373 2.5967 40 1 5.5693 8.7426 2.5977 41 1 6.2342 13.2789 1.5535 42 1 1.1249 1.9184 2.8727 43 1 2.2933 0.6052 2.5921 44 1 2.8619 2.2001 3.1410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870341641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:19 Heat of formation + Delta-G solvation = -33.245625 kcal Electronic energy + Delta-G solvation = -23716.791523 eV Core-core repulsion = 20249.456534 eV Total energy + Delta-G solvation = -3467.334989 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72814 -39.77189 -37.13741 -35.34021 -35.01368 -32.46887 -32.26079 -30.18548 -28.12945 -27.64927 -26.38571 -26.32001 -24.42319 -23.13816 -22.19917 -20.72005 -19.64896 -18.15114 -17.73329 -16.83185 -16.40017 -16.18588 -15.86089 -15.50870 -14.92926 -14.24059 -14.14544 -13.73734 -13.69216 -13.46793 -13.37880 -13.10167 -12.84548 -12.68592 -12.42068 -12.36877 -12.33349 -12.18860 -11.81624 -11.28942 -11.06637 -11.00313 -10.93684 -10.54647 -10.38353 -10.25933 -10.21682 -9.79576 -9.69673 -9.68706 -9.47251 -8.95478 -8.89176 -8.50843 -6.01172 -3.98200 1.19746 1.96375 1.97850 3.06789 3.25549 3.33138 3.40986 3.44671 4.08216 4.21861 4.43811 4.47858 4.56496 4.69425 4.74724 5.01462 5.04782 5.17901 5.24495 5.31097 5.38458 5.47482 5.49559 5.52282 5.62175 5.72690 5.77687 6.05589 6.16831 6.24768 6.33794 6.53235 6.55785 6.64443 6.73058 6.85478 7.01427 7.11765 7.14198 7.25801 7.32050 7.39855 7.80216 8.10196 8.56880 9.03830 9.61086 11.11568 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035626 B = 0.002966 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.754865 B = 9438.897929 C = 9924.921845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 N -0.360 5.360 4 N -0.302 5.302 5 C 0.107 3.893 6 C -0.281 4.281 7 C 0.540 3.460 8 O -0.527 6.527 9 O -0.344 6.344 10 C 0.080 3.920 11 C -0.049 4.049 12 C -0.127 4.127 13 C -0.127 4.127 14 C -0.004 4.004 15 C -0.508 4.508 16 H 0.080 0.920 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.874 3.126 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C 0.162 3.838 24 C -0.102 4.102 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.199 0.801 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.018 0.982 40 H 0.013 0.987 41 H 0.262 0.738 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 -26.181 -0.806 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.140 5.140 4 N -0.120 5.120 5 C -0.080 4.080 6 C -0.294 4.294 7 C 0.385 3.615 8 O -0.418 6.418 9 O -0.259 6.259 10 C 0.006 3.994 11 C -0.049 4.049 12 C -0.185 4.185 13 C -0.184 4.184 14 C -0.041 4.041 15 C -0.546 4.546 16 H 0.098 0.902 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.702 3.298 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 C 0.029 3.971 24 C -0.160 4.160 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.216 0.784 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.027 -26.893 -1.463 28.739 hybrid contribution 0.278 0.787 1.820 2.002 sum -9.749 -26.107 0.357 27.870 Atomic orbital electron populations 1.22195 0.93803 1.03372 1.03573 1.21797 0.95612 0.77388 1.04883 1.48586 1.49680 1.12329 1.03368 1.77241 1.23015 1.04606 1.07155 1.24234 0.94818 0.95178 0.93814 1.19142 1.22112 0.94565 0.93536 1.19903 0.73589 0.82051 0.85908 1.90770 1.52528 1.83085 1.15394 1.86526 1.75758 1.22018 1.41643 1.23460 0.99609 0.84619 0.91669 1.20571 0.96106 0.91785 0.96425 1.21729 0.96592 1.00997 0.99144 1.21723 0.96715 1.00869 0.99123 1.19629 0.96115 0.93451 0.94895 1.21052 1.43320 0.95176 0.95043 0.90201 1.24994 0.94909 0.95667 0.97884 1.69904 1.45342 1.03549 1.35466 0.86865 0.78925 0.77200 0.86828 1.20368 1.21475 1.19038 1.21477 0.93857 0.90455 0.91281 1.20734 1.05241 1.01696 0.88305 0.91816 0.91334 0.90166 0.88148 0.88573 0.78422 0.91709 0.91718 0.93888 0.91095 0.93863 0.93859 0.91098 0.93899 0.96381 0.96834 0.92802 0.89315 0.90945 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.24 37.16 0.38 -0.44 16 2 C 0.12 0.70 6.93 -4.04 -0.03 0.67 16 3 N -0.36 -3.59 3.58 -56.59 -0.20 -3.79 16 4 N -0.30 -3.66 12.50 30.87 0.39 -3.28 16 5 C 0.11 1.32 11.87 -16.97 -0.20 1.12 16 6 C -0.28 -3.76 6.13 -105.08 -0.64 -4.41 16 7 C 0.54 8.55 7.95 34.41 0.27 8.82 16 8 O -0.53 -9.13 14.64 -19.29 -0.28 -9.42 16 9 O -0.34 -5.70 8.73 -40.65 -0.35 -6.05 16 10 C 0.08 1.43 4.33 37.16 0.16 1.59 16 11 C -0.05 -0.96 0.61 -154.50 -0.09 -1.06 16 12 C -0.13 -2.41 8.08 37.16 0.30 -2.11 16 13 C -0.13 -2.41 8.08 37.16 0.30 -2.11 16 14 C 0.00 -0.08 3.11 -27.88 -0.09 -0.17 16 15 C -0.51 -13.87 8.20 -34.44 -0.28 -14.15 16 16 H 0.08 2.31 5.92 -52.49 -0.31 2.00 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 19 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 23 C 0.16 1.78 7.01 -81.59 -0.57 1.21 16 24 C -0.10 -0.84 9.56 36.00 0.34 -0.49 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.32 7.01 -51.93 -0.36 -0.05 16 30 H 0.20 2.07 8.06 -52.48 -0.42 1.65 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.72 7.68 -51.93 -0.40 0.32 16 34 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 38 H 0.04 0.72 7.68 -51.93 -0.40 0.32 16 39 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 40 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.38 7.04 -51.93 -0.37 0.01 16 44 H 0.11 1.09 6.51 -51.93 -0.34 0.75 16 LS Contribution 358.68 15.07 5.41 5.41 Total: -1.00 -32.82 358.68 -6.22 -39.04 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -7.02 Total: -2.47 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -0.25 Total: -9.72 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.96 Total: -33.77 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.64 Total: -15.47 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.82 -6.22 -39.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870341641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.792 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds