Wall clock time and date at job start Tue Mar 31 2020 07:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46903 * 2 1 4 4 N 1.39932 * 125.74487 * 269.97317 * 3 2 1 5 5 C 1.30431 * 108.91517 * 180.02562 * 4 3 2 6 6 C 1.41334 * 108.01877 * 359.97438 * 5 4 3 7 7 C 1.47288 * 126.42982 * 179.97438 * 6 5 4 8 8 O 1.21527 * 120.00119 * 180.02562 * 7 6 5 9 9 O 1.34757 * 119.99787 * 0.02669 * 7 6 5 10 10 C 1.45195 * 116.99703 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46873 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46786 * 299.99582 * 11 10 9 13 13 C 1.52996 * 109.47284 * 60.00027 * 11 10 9 14 14 C 1.53005 * 109.46842 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.46605 * 179.97438 * 14 11 10 16 16 H 1.07998 * 120.00677 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99491 * 179.97438 * 15 14 11 18 18 N 1.31519 * 119.99548 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00501 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46923 * 89.99528 * 19 17 15 21 21 H 1.48493 * 109.47332 * 209.99981 * 19 17 15 22 22 H 1.48501 * 109.46854 * 330.00188 * 19 17 15 23 23 C 1.34231 * 125.74268 * 90.00119 * 3 2 1 24 24 C 1.50696 * 126.29226 * 0.23993 * 23 3 2 25 25 H 1.09000 * 109.47519 * 300.00309 * 1 2 3 26 26 H 1.09012 * 109.46968 * 59.99887 * 1 2 3 27 27 H 1.08998 * 109.47518 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47271 * 240.00367 * 2 1 3 29 29 H 1.08995 * 109.46874 * 120.00001 * 2 1 3 30 30 H 1.08009 * 125.98590 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.47352 * 299.99891 * 10 9 7 32 32 H 1.08997 * 109.47705 * 59.99906 * 10 9 7 33 33 H 1.08993 * 109.46811 * 60.00665 * 12 11 10 34 34 H 1.09007 * 109.46790 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.47344 * 299.99720 * 12 11 10 36 36 H 1.08996 * 109.47360 * 59.99804 * 13 11 10 37 37 H 1.08997 * 109.47289 * 180.02562 * 13 11 10 38 38 H 1.09007 * 109.46855 * 299.99832 * 13 11 10 39 39 H 1.08996 * 109.47151 * 299.99796 * 14 11 10 40 40 H 1.08999 * 109.47063 * 60.00656 * 14 11 10 41 41 H 0.97002 * 119.99561 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.47149 * 269.71404 * 24 23 3 43 43 H 1.09001 * 109.47680 * 29.71290 * 24 23 3 44 44 H 1.09005 * 109.47158 * 149.71511 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2912 2.1518 -1.1357 5 6 2.7077 3.3287 -0.7581 6 6 2.7166 3.3567 0.6549 7 6 3.1181 4.4907 1.5048 8 8 3.0807 4.3862 2.7150 9 8 3.5269 5.6440 0.9404 10 6 3.9080 6.7188 1.8391 11 6 4.3407 7.9378 1.0218 12 6 5.5336 7.5631 0.1400 13 6 3.1789 8.3986 0.1394 14 6 4.7417 9.0706 1.9689 15 6 5.1684 10.2709 1.1638 16 1 5.1545 10.2301 0.0846 17 6 5.5755 11.4217 1.8050 18 7 5.9474 12.4694 1.1024 19 14 5.5988 11.4927 3.6714 20 1 6.9247 11.0438 4.1673 21 1 5.3499 12.8871 4.1169 22 1 4.5405 10.6033 4.2138 23 6 2.2796 2.1205 1.0895 24 6 2.1296 1.6806 2.5230 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.9945 4.1400 -1.4109 31 1 3.0583 6.9854 2.4677 32 1 4.7360 6.3907 2.4675 33 1 5.2474 6.7563 -0.5347 34 1 5.8421 8.4317 -0.4420 35 1 6.3613 7.2349 0.7687 36 1 2.3291 8.6655 0.7676 37 1 3.4872 9.2667 -0.4432 38 1 2.8928 7.5917 -0.5353 39 1 3.8916 9.3373 2.5967 40 1 5.5693 8.7426 2.5977 41 1 6.2342 13.2789 1.5535 42 1 1.1249 1.9184 2.8727 43 1 2.2933 0.6052 2.5921 44 1 2.8619 2.2001 3.1410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870341641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:18 Heat of formation + Delta-G solvation = -52.104337 kcal Electronic energy + Delta-G solvation = -23717.609298 eV Core-core repulsion = 20249.456534 eV Total energy + Delta-G solvation = -3468.152764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.59094 -41.02562 -38.64356 -36.76935 -35.64274 -34.37467 -33.23757 -30.93944 -29.87966 -28.70523 -27.95324 -27.64707 -25.21125 -24.48078 -23.61558 -21.68335 -20.54257 -19.72997 -18.89458 -18.78933 -17.47340 -17.39139 -16.84578 -16.34880 -16.21493 -15.67638 -15.36698 -15.20308 -14.88755 -14.59422 -14.29098 -14.14251 -14.07725 -13.87681 -13.69807 -13.38148 -13.30569 -13.00593 -12.90272 -12.83792 -12.65829 -12.27195 -12.25545 -12.11775 -11.91446 -11.77850 -11.72131 -11.43385 -11.29529 -11.15090 -10.91227 -10.69740 -10.46789 -9.80439 -8.21241 -6.22064 0.29093 1.00650 1.24639 1.37538 1.39574 1.50072 1.88719 2.16837 2.40233 3.13581 3.46370 3.50936 3.83727 3.90999 3.97940 3.98267 4.04461 4.16627 4.21618 4.33318 4.40535 4.59610 4.61662 4.62303 4.70995 4.74071 4.81868 4.91012 5.01261 5.02746 5.06245 5.13705 5.20992 5.29703 5.34812 5.39832 5.43250 5.56019 5.57598 5.66701 5.77271 5.84610 6.38921 6.45651 6.83837 6.88827 7.40143 8.94489 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035626 B = 0.002966 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.754865 B = 9438.897929 C = 9924.921845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.112 3.888 3 N -0.352 5.352 4 N -0.320 5.320 5 C 0.103 3.897 6 C -0.314 4.314 7 C 0.540 3.460 8 O -0.547 6.547 9 O -0.344 6.344 10 C 0.089 3.911 11 C -0.048 4.048 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.003 4.003 15 C -0.503 4.503 16 H 0.050 0.950 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.937 3.063 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.250 1.250 23 C 0.172 3.828 24 C -0.100 4.100 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.127 0.873 30 H 0.208 0.792 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.017 0.983 41 H 0.263 0.737 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.801 -29.342 0.479 31.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.131 5.131 4 N -0.139 5.139 5 C -0.084 4.084 6 C -0.327 4.327 7 C 0.387 3.613 8 O -0.439 6.439 9 O -0.260 6.260 10 C 0.015 3.985 11 C -0.048 4.048 12 C -0.179 4.179 13 C -0.178 4.178 14 C -0.041 4.041 15 C -0.541 4.541 16 H 0.068 0.932 17 C -0.192 4.192 18 N -0.593 5.593 19 Si 0.761 3.239 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.173 1.173 23 C 0.037 3.963 24 C -0.158 4.158 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.145 0.855 30 H 0.225 0.775 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.127 0.873 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.069 -30.098 -0.197 32.070 hybrid contribution 0.543 1.627 1.316 2.162 sum -10.526 -28.471 1.119 30.375 Atomic orbital electron populations 1.22172 0.93045 1.04784 1.02424 1.22285 0.96217 0.75320 1.06878 1.48978 1.48377 1.13330 1.02441 1.77194 1.23441 1.04804 1.08469 1.24415 0.94704 0.95645 0.93660 1.19180 1.24755 0.94909 0.93820 1.20269 0.72989 0.82002 0.86033 1.90756 1.53641 1.83308 1.16200 1.86507 1.76089 1.22191 1.41248 1.23134 0.99685 0.84405 0.91230 1.20442 0.96614 0.91658 0.96051 1.21652 0.96459 1.00587 0.99164 1.21647 0.96460 1.00588 0.99142 1.19577 0.96090 0.93248 0.95139 1.21311 1.41996 0.96545 0.94241 0.93161 1.25859 0.95003 0.95424 1.02864 1.70050 1.47311 1.04392 1.37532 0.85859 0.79620 0.77441 0.80960 1.19548 1.21378 1.17319 1.21864 0.92095 0.89715 0.92632 1.20822 1.05209 1.03737 0.85991 0.92064 0.93332 0.87474 0.87340 0.85462 0.77547 0.91674 0.91588 0.91633 0.93653 0.93563 0.93613 0.93647 0.91648 0.96279 0.96421 0.92800 0.88182 0.87331 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.24 71.98 0.74 -0.37 16 2 C 0.11 0.89 6.93 86.38 0.60 1.49 16 3 N -0.35 -6.19 3.58 -332.96 -1.19 -7.38 16 4 N -0.32 -7.33 12.50 -56.25 -0.70 -8.03 16 5 C 0.10 2.44 11.87 85.66 1.02 3.46 16 6 C -0.31 -8.03 6.13 -20.16 -0.12 -8.16 16 7 C 0.54 16.54 7.95 70.20 0.56 17.09 16 8 O -0.55 -18.42 14.64 19.75 0.29 -18.13 16 9 O -0.34 -10.99 8.73 -56.68 -0.49 -11.48 16 10 C 0.09 3.08 4.33 71.98 0.31 3.40 16 11 C -0.05 -1.84 0.61 -52.18 -0.03 -1.88 16 12 C -0.12 -4.56 8.08 71.98 0.58 -3.98 16 13 C -0.12 -4.56 8.08 71.98 0.58 -3.98 16 14 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 15 C -0.50 -27.99 8.20 25.60 0.21 -27.78 16 16 H 0.05 3.04 5.92 -2.91 -0.02 3.02 16 17 C 0.00 0.27 5.47 84.65 0.46 0.73 16 18 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 19 Si 0.94 44.56 27.47 68.60 1.88 46.44 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.25 -11.12 6.54 99.48 0.65 -10.46 16 23 C 0.17 3.40 7.01 42.16 0.30 3.70 16 24 C -0.10 -1.36 9.56 71.23 0.68 -0.68 16 25 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.13 0.25 7.01 -2.39 -0.02 0.23 16 30 H 0.21 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 33 H 0.06 2.13 7.68 -2.39 -0.02 2.12 16 34 H 0.04 1.91 6.62 -2.38 -0.02 1.90 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.04 1.92 6.62 -2.39 -0.02 1.90 16 38 H 0.06 2.13 7.68 -2.38 -0.02 2.12 16 39 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 40 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 41 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.11 0.66 7.04 -2.39 -0.02 0.64 16 44 H 0.09 1.63 6.51 -2.38 -0.02 1.61 16 Total: -1.00 -71.96 358.68 6.98 -64.98 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.93 Total: 9.70 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 5.97 Total: -17.00 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -1.59 Total: -74.52 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.21 Total: -29.61 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -71.96 6.98 -64.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870341641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.877 kcal (2) G-P(sol) polarization free energy of solvation -71.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds