Wall clock time and date at job start Tue Mar 31 2020 07:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46594 * 2 1 4 4 C 1.52996 * 109.46955 * 119.99621 * 2 1 3 5 5 C 1.50700 * 109.47510 * 294.99914 * 4 2 1 6 6 H 1.07999 * 119.99841 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00167 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00064 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00124 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47136 * 0.02562 * 9 7 5 11 11 H 1.48511 * 109.47027 * 119.99987 * 9 7 5 12 12 H 1.48493 * 109.47348 * 240.00027 * 9 7 5 13 13 C 1.52999 * 109.47275 * 240.00139 * 2 1 3 14 14 N 1.46900 * 109.47340 * 65.18059 * 13 2 1 15 15 C 1.46893 * 111.00122 * 199.87251 * 14 13 2 16 16 C 1.46894 * 110.99908 * 75.91695 * 14 13 2 17 17 C 1.50697 * 109.47222 * 190.00130 * 16 14 13 18 18 O 1.21277 * 120.00205 * 0.02562 * 17 16 14 19 19 N 1.34778 * 120.00037 * 180.02562 * 17 16 14 20 20 C 1.46499 * 120.00026 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47396 * 180.02562 * 20 19 17 22 22 C 1.34518 * 125.78769 * 89.99928 * 21 20 19 23 23 C 1.41383 * 106.83849 * 180.02562 * 22 21 20 24 24 C 1.34512 * 106.84374 * 0.02562 * 23 22 21 25 25 O 1.34302 * 108.42005 * 359.73264 * 24 23 22 26 26 H 1.09001 * 109.47272 * 55.12473 * 1 2 3 27 27 H 1.09003 * 109.46895 * 175.12253 * 1 2 3 28 28 H 1.09003 * 109.47579 * 295.11872 * 1 2 3 29 29 H 1.09003 * 109.47238 * 55.00374 * 4 2 1 30 30 H 1.08999 * 109.47104 * 175.00027 * 4 2 1 31 31 H 0.96996 * 119.99755 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.46841 * 305.17986 * 13 2 1 33 33 H 1.08999 * 109.47040 * 185.18578 * 13 2 1 34 34 H 1.09001 * 109.47514 * 290.70336 * 15 14 13 35 35 H 1.09006 * 109.46955 * 50.70300 * 15 14 13 36 36 H 1.08999 * 109.47255 * 170.69691 * 15 14 13 37 37 H 1.08999 * 109.47114 * 70.00062 * 16 14 13 38 38 H 1.09003 * 109.47667 * 310.00135 * 16 14 13 39 39 H 0.97000 * 120.00525 * 0.02562 * 19 17 16 40 40 H 1.09003 * 109.47501 * 300.00367 * 20 19 17 41 41 H 1.08999 * 109.46879 * 60.00099 * 20 19 17 42 42 H 1.07999 * 126.57931 * 0.04551 * 22 21 20 43 43 H 1.08004 * 126.58198 * 179.97438 * 23 22 21 44 44 H 1.08000 * 125.79151 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6755 -1.5192 3.8513 9 14 1.4976 0.5623 5.2497 10 1 0.7403 1.7734 4.8435 11 1 0.6432 -0.2871 6.1181 12 1 2.7153 0.9669 5.9970 13 6 2.0401 -0.7212 -1.2492 14 7 1.6552 0.0397 -2.4454 15 6 1.6939 -0.8086 -3.6440 16 6 2.5066 1.2251 -2.6118 17 6 1.9357 2.1060 -3.6930 18 8 0.9193 1.7788 -4.2681 19 7 2.5546 3.2574 -4.0210 20 6 1.9999 4.1135 -5.0725 21 6 2.8740 5.3290 -5.2439 22 6 3.9234 5.4318 -6.0792 23 6 4.4498 6.7340 -5.9171 24 6 3.6910 7.3488 -4.9922 25 8 2.7347 6.4950 -4.5920 26 1 -0.3634 0.5876 -0.8431 27 1 -0.3633 -1.0240 -0.0874 28 1 -0.3634 0.4362 0.9305 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7994 1.2056 31 1 2.9227 -1.8421 4.7319 32 1 1.6029 -1.7186 -1.2968 33 1 3.1261 -0.8023 -1.2040 34 1 2.7285 -1.0584 -3.8792 35 1 1.1320 -1.7243 -3.4593 36 1 1.2497 -0.2728 -4.4829 37 1 3.5131 0.9133 -2.8909 38 1 2.5450 1.7795 -1.6740 39 1 3.3678 3.5191 -3.5613 40 1 1.9615 3.5589 -6.0100 41 1 0.9935 4.4256 -4.7935 42 1 4.2927 4.6667 -6.7459 43 1 5.2988 7.1541 -6.4358 44 1 3.8249 8.3594 -4.6356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876542902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:12 Heat of formation + Delta-G solvation = -23.049741 kcal Electronic energy + Delta-G solvation = -23136.629897 eV Core-core repulsion = 19669.737035 eV Total energy + Delta-G solvation = -3466.892862 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.95693 -39.86133 -37.34173 -35.21176 -34.18493 -33.33493 -31.96227 -30.99990 -28.43626 -27.16983 -26.28175 -25.77999 -23.56297 -22.14204 -21.72943 -20.96523 -20.46711 -18.89036 -18.05582 -17.08824 -16.61060 -16.27252 -15.86730 -15.75798 -14.97277 -14.68140 -14.47684 -14.30030 -14.08061 -13.56075 -13.37102 -13.21964 -13.03167 -12.79184 -12.53076 -12.35530 -12.16880 -11.61089 -11.55320 -11.39843 -11.21306 -10.83414 -10.68909 -10.35757 -10.29572 -10.23645 -9.82901 -9.60458 -9.31178 -9.09935 -8.96246 -8.88936 -8.31308 -7.98471 -5.96201 -3.96895 1.21832 2.16876 2.54101 2.63304 3.13737 3.33148 3.40906 3.45287 4.19616 4.25741 4.50433 4.62141 4.65991 4.76721 5.00728 5.24750 5.25390 5.39286 5.40360 5.41941 5.51352 5.54273 5.63771 5.67671 5.84916 5.97590 6.06763 6.10312 6.19206 6.28925 6.42542 6.56955 6.73528 6.76625 7.04222 7.09384 7.25833 7.29195 7.40655 7.45794 7.71930 7.87842 8.04546 8.17709 8.48984 9.09870 9.66499 11.15396 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.002903 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.054338 B = 9643.710313 C =10876.588873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.060 3.940 14 N -0.521 5.521 15 C 0.020 3.980 16 C 0.036 3.964 17 C 0.520 3.480 18 O -0.519 6.519 19 N -0.736 5.736 20 C 0.205 3.795 21 C -0.035 4.035 22 C -0.186 4.186 23 C -0.219 4.219 24 C -0.029 4.029 25 O -0.170 6.170 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.258 0.742 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.015 0.985 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.403 0.597 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 13.384 -20.923 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.012 4.012 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.067 4.067 14 N -0.245 5.245 15 C -0.128 4.128 16 C -0.095 4.095 17 C 0.306 3.694 18 O -0.393 6.393 19 N -0.392 5.392 20 C 0.081 3.919 21 C -0.085 4.085 22 C -0.206 4.206 23 C -0.238 4.238 24 C -0.098 4.098 25 O -0.066 6.066 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.033 0.967 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.238 0.762 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.168 0.832 43 H 0.168 0.832 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.944 13.209 -20.943 24.935 hybrid contribution 1.388 0.460 0.905 1.720 sum 4.332 13.670 -20.038 24.641 Atomic orbital electron populations 1.21587 0.95679 1.00331 1.00475 1.21198 0.96109 0.98815 0.93651 0.92886 1.19139 0.95859 0.95656 0.90497 1.21277 1.34359 1.08266 0.90951 0.92499 1.25021 0.95385 0.95096 0.99087 1.69978 1.39266 1.21269 1.23228 0.86587 0.78228 0.80176 0.83332 1.19734 1.21099 1.21151 1.22432 0.97826 0.97081 0.89388 1.61692 1.52281 1.06864 1.03647 1.22557 0.99002 0.97459 0.93803 1.22023 0.95153 0.93779 0.98588 1.20780 0.84087 0.80791 0.83709 1.90667 1.23650 1.72036 1.52970 1.46104 1.30347 1.22698 1.40013 1.19512 0.95200 0.84220 0.92927 1.22343 1.00601 0.87488 0.98079 1.21718 0.97589 0.98504 1.02834 1.21891 1.03778 0.95405 1.02758 1.24163 0.89937 0.96287 0.99385 1.84071 1.46507 1.21169 1.54806 0.93867 0.94327 0.92637 0.96541 0.96946 0.93189 0.90904 0.94979 0.96664 0.91576 0.90015 0.92135 0.87141 0.76230 0.88451 0.89670 0.83175 0.83218 0.77866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.91 37.16 0.33 -2.17 16 2 C -0.08 -1.62 2.39 -90.62 -0.22 -1.83 16 3 H 0.05 1.08 6.67 -51.93 -0.35 0.74 16 4 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 5 C -0.51 -14.26 8.34 -34.44 -0.29 -14.55 16 6 H 0.06 1.56 7.08 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.06 1.03 4.39 -3.82 -0.02 1.02 16 14 N -0.52 -8.16 3.98 -244.38 -0.97 -9.14 16 15 C 0.02 0.28 9.19 60.06 0.55 0.83 16 16 C 0.04 0.47 5.27 -4.98 -0.03 0.45 16 17 C 0.52 6.78 7.59 -10.99 -0.08 6.69 16 18 O -0.52 -8.46 14.31 5.56 0.08 -8.39 16 19 N -0.74 -7.29 5.55 -61.48 -0.34 -7.63 16 20 C 0.20 1.88 6.20 -5.20 -0.03 1.85 16 21 C -0.03 -0.31 6.69 -35.63 -0.24 -0.55 16 22 C -0.19 -1.47 10.81 -39.70 -0.43 -1.90 16 23 C -0.22 -1.55 10.91 -39.70 -0.43 -1.99 16 24 C -0.03 -0.21 12.09 29.42 0.36 0.15 16 25 O -0.17 -1.63 10.65 5.70 0.06 -1.57 16 26 H 0.04 0.83 7.90 -51.93 -0.41 0.42 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.20 6.82 -51.93 -0.35 0.84 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.07 1.27 7.74 -51.93 -0.40 0.87 16 33 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 34 H 0.01 0.19 8.07 -51.93 -0.42 -0.23 16 35 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 36 H 0.08 1.20 5.99 -51.93 -0.31 0.88 16 37 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 38 H 0.11 1.48 6.58 -51.93 -0.34 1.14 16 39 H 0.40 3.26 8.46 -40.82 -0.35 2.92 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 44 H 0.20 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -33.24 363.72 -7.78 -41.03 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.06 Total: -0.28 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.75 Total: -9.99 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.58 Total: -42.99 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.14 Total: -9.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.24 -7.78 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876542902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.975 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds