Wall clock time and date at job start Tue Mar 31 2020 07:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46594 * 2 1 4 4 C 1.52996 * 109.46955 * 119.99621 * 2 1 3 5 5 C 1.50700 * 109.47510 * 294.99914 * 4 2 1 6 6 H 1.07999 * 119.99841 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00167 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00064 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00124 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47136 * 0.02562 * 9 7 5 11 11 H 1.48511 * 109.47027 * 119.99987 * 9 7 5 12 12 H 1.48493 * 109.47348 * 240.00027 * 9 7 5 13 13 C 1.52999 * 109.47275 * 240.00139 * 2 1 3 14 14 N 1.46900 * 109.47340 * 65.18059 * 13 2 1 15 15 C 1.46893 * 111.00122 * 199.87251 * 14 13 2 16 16 C 1.46894 * 110.99908 * 75.91695 * 14 13 2 17 17 C 1.50697 * 109.47222 * 190.00130 * 16 14 13 18 18 O 1.21277 * 120.00205 * 0.02562 * 17 16 14 19 19 N 1.34778 * 120.00037 * 180.02562 * 17 16 14 20 20 C 1.46499 * 120.00026 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47396 * 180.02562 * 20 19 17 22 22 C 1.34518 * 125.78769 * 89.99928 * 21 20 19 23 23 C 1.41383 * 106.83849 * 180.02562 * 22 21 20 24 24 C 1.34512 * 106.84374 * 0.02562 * 23 22 21 25 25 O 1.34302 * 108.42005 * 359.73264 * 24 23 22 26 26 H 1.09001 * 109.47272 * 55.12473 * 1 2 3 27 27 H 1.09003 * 109.46895 * 175.12253 * 1 2 3 28 28 H 1.09003 * 109.47579 * 295.11872 * 1 2 3 29 29 H 1.09003 * 109.47238 * 55.00374 * 4 2 1 30 30 H 1.08999 * 109.47104 * 175.00027 * 4 2 1 31 31 H 0.96996 * 119.99755 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.46841 * 305.17986 * 13 2 1 33 33 H 1.08999 * 109.47040 * 185.18578 * 13 2 1 34 34 H 1.09001 * 109.47514 * 290.70336 * 15 14 13 35 35 H 1.09006 * 109.46955 * 50.70300 * 15 14 13 36 36 H 1.08999 * 109.47255 * 170.69691 * 15 14 13 37 37 H 1.08999 * 109.47114 * 70.00062 * 16 14 13 38 38 H 1.09003 * 109.47667 * 310.00135 * 16 14 13 39 39 H 0.97000 * 120.00525 * 0.02562 * 19 17 16 40 40 H 1.09003 * 109.47501 * 300.00367 * 20 19 17 41 41 H 1.08999 * 109.46879 * 60.00099 * 20 19 17 42 42 H 1.07999 * 126.57931 * 0.04551 * 22 21 20 43 43 H 1.08004 * 126.58198 * 179.97438 * 23 22 21 44 44 H 1.08000 * 125.79151 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6755 -1.5192 3.8513 9 14 1.4976 0.5623 5.2497 10 1 0.7403 1.7734 4.8435 11 1 0.6432 -0.2871 6.1181 12 1 2.7153 0.9669 5.9970 13 6 2.0401 -0.7212 -1.2492 14 7 1.6552 0.0397 -2.4454 15 6 1.6939 -0.8086 -3.6440 16 6 2.5066 1.2251 -2.6118 17 6 1.9357 2.1060 -3.6930 18 8 0.9193 1.7788 -4.2681 19 7 2.5546 3.2574 -4.0210 20 6 1.9999 4.1135 -5.0725 21 6 2.8740 5.3290 -5.2439 22 6 3.9234 5.4318 -6.0792 23 6 4.4498 6.7340 -5.9171 24 6 3.6910 7.3488 -4.9922 25 8 2.7347 6.4950 -4.5920 26 1 -0.3634 0.5876 -0.8431 27 1 -0.3633 -1.0240 -0.0874 28 1 -0.3634 0.4362 0.9305 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7994 1.2056 31 1 2.9227 -1.8421 4.7319 32 1 1.6029 -1.7186 -1.2968 33 1 3.1261 -0.8023 -1.2040 34 1 2.7285 -1.0584 -3.8792 35 1 1.1320 -1.7243 -3.4593 36 1 1.2497 -0.2728 -4.4829 37 1 3.5131 0.9133 -2.8909 38 1 2.5450 1.7795 -1.6740 39 1 3.3678 3.5191 -3.5613 40 1 1.9615 3.5589 -6.0100 41 1 0.9935 4.4256 -4.7935 42 1 4.2927 4.6667 -6.7459 43 1 5.2988 7.1541 -6.4358 44 1 3.8249 8.3594 -4.6356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876542902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:11 Heat of formation + Delta-G solvation = -45.167405 kcal Electronic energy + Delta-G solvation = -23137.588991 eV Core-core repulsion = 19669.737035 eV Total energy + Delta-G solvation = -3467.851956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.55046 -40.90759 -38.67353 -36.26459 -35.79254 -33.95563 -33.92818 -31.76598 -29.42502 -29.02286 -27.76186 -26.62418 -25.34950 -23.14097 -22.71269 -21.66969 -21.45863 -20.48783 -18.82045 -18.49215 -17.86160 -17.34768 -16.93038 -16.62785 -16.48954 -15.90192 -15.71970 -15.55999 -15.15237 -14.89194 -14.42498 -14.31420 -13.99213 -13.81998 -13.76808 -13.54439 -13.28436 -13.05495 -12.99082 -12.75569 -12.68708 -12.63527 -12.42953 -12.18430 -11.99077 -11.37657 -11.09229 -11.04267 -10.90368 -10.73542 -10.50797 -10.19961 -9.53624 -9.17785 -8.15237 -6.23381 0.60579 1.40656 1.41971 1.54442 1.60112 1.62308 1.94793 2.29444 2.44006 3.11099 3.18493 3.59918 3.82979 4.02966 4.10484 4.12666 4.28728 4.33404 4.37386 4.40688 4.52075 4.55959 4.64209 4.67461 4.88125 4.90036 4.95666 4.99424 5.06780 5.10843 5.13762 5.30048 5.33565 5.48649 5.52941 5.56225 5.59364 5.82662 5.92181 6.03750 6.13996 6.15930 6.35413 6.49469 6.92767 7.21668 7.44614 8.96903 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.002903 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.054338 B = 9643.710313 C =10876.588873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.069 4.069 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.525 4.525 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.073 3.927 14 N -0.536 5.536 15 C 0.025 3.975 16 C 0.034 3.966 17 C 0.523 3.477 18 O -0.556 6.556 19 N -0.721 5.721 20 C 0.208 3.792 21 C -0.055 4.055 22 C -0.185 4.185 23 C -0.230 4.230 24 C -0.030 4.030 25 O -0.192 6.192 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.037 0.963 29 H -0.010 1.010 30 H -0.008 1.008 31 H 0.261 0.739 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.413 0.587 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.164 0.836 43 H 0.171 0.829 44 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 15.026 -21.591 26.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.005 4.005 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.204 1.204 13 C -0.055 4.055 14 N -0.260 5.260 15 C -0.123 4.123 16 C -0.097 4.097 17 C 0.310 3.690 18 O -0.433 6.433 19 N -0.376 5.376 20 C 0.085 3.915 21 C -0.104 4.104 22 C -0.205 4.205 23 C -0.249 4.249 24 C -0.098 4.098 25 O -0.089 6.089 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.009 0.991 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.250 0.750 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.181 0.819 43 H 0.188 0.812 44 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.656 14.883 -21.627 26.507 hybrid contribution 1.225 0.010 1.058 1.619 sum 4.881 14.893 -20.569 25.860 Atomic orbital electron populations 1.21472 0.95357 1.00288 0.99950 1.21003 0.96197 0.98570 0.93066 0.92664 1.19013 0.94375 0.94646 0.92451 1.21658 1.34098 1.08473 0.92108 0.92311 1.25903 0.95364 0.96081 1.02488 1.70101 1.40446 1.22889 1.24143 0.85505 0.78073 0.78909 0.79220 1.18748 1.20734 1.20423 1.22134 0.97819 0.96615 0.88900 1.61567 1.53328 1.07550 1.03551 1.22505 0.99988 0.97087 0.92692 1.22081 0.95997 0.92957 0.98681 1.20704 0.83624 0.81324 0.83343 1.90656 1.25238 1.73055 1.54349 1.45985 1.30192 1.21688 1.39739 1.19479 0.94707 0.84513 0.92782 1.22256 1.01429 0.87467 0.99277 1.22001 0.96953 0.99260 1.02247 1.22230 1.04495 0.95123 1.03026 1.24890 0.88879 0.97099 0.98896 1.84054 1.47602 1.21723 1.55497 0.92652 0.94428 0.94396 0.99147 0.98984 0.92988 0.91174 0.94566 0.95052 0.91450 0.90584 0.89723 0.87394 0.75039 0.87690 0.90895 0.81881 0.81179 0.74812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 8.91 71.98 0.64 -3.92 16 2 C -0.07 -2.84 2.39 -10.79 -0.03 -2.86 16 3 H 0.05 2.23 6.67 -2.39 -0.02 2.21 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -29.59 8.34 25.60 0.21 -29.37 16 6 H 0.06 3.22 7.08 -2.91 -0.02 3.20 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 8 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 9 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 C 0.07 2.47 4.39 86.30 0.38 2.85 16 14 N -0.54 -16.14 3.98 -927.08 -3.69 -19.83 16 15 C 0.02 0.66 9.19 127.69 1.17 1.83 16 16 C 0.03 0.84 5.27 85.56 0.45 1.29 16 17 C 0.52 13.08 7.59 87.66 0.66 13.74 16 18 O -0.56 -17.81 14.31 -3.02 -0.04 -17.85 16 19 N -0.72 -13.46 5.55 -466.80 -2.59 -16.05 16 20 C 0.21 3.69 6.20 85.63 0.53 4.22 16 21 C -0.05 -0.91 6.69 24.83 0.17 -0.75 16 22 C -0.18 -2.60 10.81 22.19 0.24 -2.36 16 23 C -0.23 -2.76 10.91 22.19 0.24 -2.52 16 24 C -0.03 -0.36 12.09 66.97 0.81 0.44 16 25 O -0.19 -3.48 10.65 -2.51 -0.03 -3.51 16 26 H 0.05 2.08 7.90 -2.39 -0.02 2.06 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.62 6.82 -2.39 -0.02 1.61 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.07 2.41 7.74 -2.39 -0.02 2.39 16 33 H 0.04 1.19 8.00 -2.39 -0.02 1.17 16 34 H 0.03 0.72 8.07 -2.39 -0.02 0.70 16 35 H 0.07 1.74 7.85 -2.38 -0.02 1.72 16 36 H 0.08 2.15 5.99 -2.39 -0.01 2.13 16 37 H 0.09 1.71 8.07 -2.39 -0.02 1.69 16 38 H 0.11 2.75 6.58 -2.39 -0.02 2.73 16 39 H 0.41 6.07 8.46 -92.71 -0.78 5.28 16 40 H 0.11 1.69 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.24 0.99 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -71.20 363.72 2.24 -68.96 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.20 Total: 13.43 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 6.08 Total: -15.17 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -5.99 Total: -92.43 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.07 Total: -21.36 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -71.20 2.24 -68.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876542902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.788 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds