Wall clock time and date at job start Tue Mar 31 2020 07:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00222 * 2 1 4 4 O 1.20822 * 119.99503 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99960 * 180.27663 * 3 2 1 6 6 C 1.47195 * 109.52507 * 59.60107 * 5 3 2 7 7 N 3.71510 * 144.92843 * 272.22803 * 2 1 3 8 8 C 1.53123 * 109.52743 * 299.41046 * 5 3 2 9 9 C 1.53036 * 109.28330 * 182.44338 * 8 5 3 10 10 N 1.46843 * 109.52289 * 59.17846 * 9 8 5 11 11 C 1.46894 * 111.00117 * 174.16318 * 10 9 8 12 12 C 1.52995 * 109.47144 * 307.99104 * 11 10 9 13 13 H 1.08997 * 109.47151 * 58.05360 * 12 11 10 14 14 C 1.53004 * 109.47177 * 298.05201 * 12 11 10 15 15 C 1.53002 * 109.47598 * 178.05154 * 12 11 10 16 16 C 1.50703 * 109.47407 * 184.99954 * 15 12 11 17 17 H 1.07994 * 119.99856 * 359.97438 * 16 15 12 18 18 C 1.37876 * 119.99718 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00558 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99773 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47105 * 60.00457 * 20 18 16 22 22 H 1.48502 * 109.47239 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47437 * 300.00404 * 20 18 16 24 24 C 1.46851 * 111.19780 * 298.25881 * 10 9 8 25 25 C 1.53041 * 109.52243 * 61.74506 * 24 10 9 26 26 H 1.09000 * 109.46774 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46851 * 299.99611 * 1 2 3 28 28 H 1.08995 * 109.47266 * 59.99640 * 1 2 3 29 29 H 1.09005 * 109.50203 * 302.38893 * 8 5 3 30 30 H 1.08999 * 109.50080 * 62.49453 * 8 5 3 31 31 H 1.08999 * 109.46063 * 299.16613 * 9 8 5 32 32 H 1.08995 * 109.46168 * 179.19921 * 9 8 5 33 33 H 1.09003 * 109.47309 * 67.98600 * 11 10 9 34 34 H 1.09001 * 109.47527 * 187.98717 * 11 10 9 35 35 H 1.09004 * 109.46692 * 59.99753 * 14 12 11 36 36 H 1.08997 * 109.47118 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47210 * 300.00123 * 14 12 11 38 38 H 1.09000 * 109.47313 * 305.00348 * 15 12 11 39 39 H 1.09001 * 109.47134 * 64.99773 * 15 12 11 40 40 H 0.96992 * 120.00448 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.46261 * 301.72429 * 24 10 9 42 42 H 1.09006 * 109.46020 * 181.75507 * 24 10 9 43 43 H 1.09004 * 109.49950 * 180.87957 * 25 24 10 44 44 H 1.08999 * 109.53489 * 60.78089 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0063 6 6 4.0891 0.6021 -1.2066 7 7 4.4926 0.0830 -2.1331 8 6 4.1199 0.5911 1.2470 9 6 5.6440 0.7275 1.2657 10 7 6.0095 2.1498 1.2603 11 6 7.4599 2.3212 1.4173 12 6 7.9368 1.5361 2.6408 13 1 7.6776 0.4842 2.5212 14 6 7.2600 2.0886 3.8969 15 6 9.4545 1.6750 2.7763 16 6 9.9398 0.8043 3.9065 17 1 9.2361 0.2115 4.4719 18 6 11.2822 0.7645 4.2186 19 7 12.1390 1.4868 3.5305 20 14 11.8836 -0.3142 5.6200 21 1 11.5390 -1.7308 5.3373 22 1 13.3567 -0.1795 5.7514 23 1 11.2333 0.1103 6.8858 24 6 5.5294 2.8168 0.0433 25 6 4.0018 2.7427 -0.0118 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.7012 1.0648 2.1350 30 1 3.8491 -0.4647 1.2352 31 1 6.0630 0.2416 0.3845 32 1 6.0400 0.2541 2.1640 33 1 7.9681 1.9504 0.5271 34 1 7.6884 3.3784 1.5523 35 1 6.1788 1.9896 3.8004 36 1 7.5994 1.5290 4.7685 37 1 7.5193 3.1405 4.0165 38 1 9.9322 1.3642 1.8472 39 1 9.7070 2.7148 2.9844 40 1 13.0834 1.4586 3.7498 41 1 5.9489 2.3211 -0.8320 42 1 5.8422 3.8610 0.0540 43 1 3.6468 3.2243 -0.9230 44 1 3.5807 3.2505 0.8560 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877566422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:47 Heat of formation + Delta-G solvation = -64.390605 kcal Electronic energy + Delta-G solvation = -24112.113186 eV Core-core repulsion = 20643.427649 eV Total energy + Delta-G solvation = -3468.685536 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43036 -39.42606 -37.09863 -36.82116 -35.31657 -33.33778 -31.88350 -31.07158 -28.58599 -27.11882 -26.53193 -24.51529 -23.55255 -22.56942 -22.03026 -21.13330 -18.80316 -18.48370 -17.44213 -17.08137 -16.52138 -16.21591 -15.28399 -15.02472 -14.65571 -14.55132 -14.39241 -14.24757 -13.97264 -13.69916 -13.28015 -12.92670 -12.79121 -12.64378 -12.44674 -12.28336 -12.25133 -11.93493 -11.54672 -11.49090 -11.32677 -11.28857 -11.22006 -10.86554 -10.84296 -10.76151 -10.61331 -10.30772 -10.20204 -9.60743 -9.17332 -8.96500 -8.33071 -8.15146 -5.98075 -3.99500 1.55215 1.95606 2.37621 2.62838 3.33964 3.36541 3.38746 3.40699 3.96136 4.12223 4.25841 4.35509 4.47672 4.70743 4.79837 4.89127 5.05315 5.14304 5.16202 5.32374 5.37203 5.38751 5.41696 5.64593 5.70726 5.80327 5.82628 5.85311 5.94173 6.00516 6.12127 6.39376 6.48611 6.61946 6.96605 7.07115 7.09561 7.16630 7.22449 7.27478 7.33266 7.67925 7.83463 8.01630 8.45012 9.06665 9.63997 11.13419 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027387 B = 0.003094 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.136541 B = 9046.907963 C = 9268.899010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.351 6.351 3 C 0.480 3.520 4 O -0.485 6.485 5 C 0.053 3.947 6 C 0.213 3.787 7 N -0.400 5.400 8 C -0.103 4.103 9 C 0.045 3.955 10 N -0.532 5.532 11 C 0.061 3.939 12 C -0.087 4.087 13 H 0.058 0.942 14 C -0.124 4.124 15 C 0.028 3.972 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.050 3.950 25 C -0.093 4.093 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.105 0.895 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.012 0.988 39 H 0.017 0.983 40 H 0.260 0.740 41 H 0.032 0.968 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.403 0.122 -6.205 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.267 6.267 3 C 0.319 3.681 4 O -0.370 6.370 5 C 0.048 3.952 6 C -0.106 4.106 7 N -0.074 5.074 8 C -0.142 4.142 9 C -0.083 4.083 10 N -0.256 5.256 11 C -0.066 4.066 12 C -0.106 4.106 13 H 0.076 0.924 14 C -0.181 4.181 15 C -0.010 4.010 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.078 4.078 25 C -0.131 4.131 26 H 0.123 0.877 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.030 0.970 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.071 -0.100 -7.239 23.228 hybrid contribution 0.525 -0.740 0.302 0.956 sum -21.546 -0.840 -6.936 22.650 Atomic orbital electron populations 1.23369 0.75527 1.04164 1.02871 1.86532 1.23988 1.32647 1.83578 1.22955 0.90380 0.81920 0.72799 1.90707 1.66184 1.36127 1.43977 1.18313 0.87469 0.98826 0.90564 1.28179 0.94546 0.93973 0.93881 1.81243 1.07382 1.08201 1.10611 1.21825 0.97104 1.01248 0.93979 1.22257 0.93071 0.90070 1.02894 1.62066 1.15885 1.11976 1.35697 1.22327 0.84252 1.01504 0.98522 1.21337 0.99060 0.97585 0.92596 0.92400 1.21602 0.98308 1.00304 0.97873 1.19111 0.87829 0.97272 0.96765 1.21181 0.92308 1.25789 1.15914 0.92615 1.25014 0.97091 0.95809 0.96581 1.69947 1.02579 1.40650 1.40463 0.86701 0.77583 0.81061 0.82901 1.20326 1.21401 1.20241 1.22139 0.93186 1.00834 0.91653 1.21680 0.96631 0.89538 1.05297 0.87724 0.91319 0.91717 0.88055 0.89251 0.94805 0.87731 0.95281 0.90685 0.93861 0.92754 0.93925 0.96983 0.96489 0.93023 0.94976 0.89165 0.89869 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.21 10.40 -39.26 -0.41 -3.62 16 3 C 0.48 4.84 6.53 36.00 0.24 5.07 16 4 O -0.48 -5.62 15.72 -18.75 -0.29 -5.91 16 5 C 0.05 0.53 0.66 -158.33 -0.10 0.42 16 6 C 0.21 2.57 11.52 -20.76 -0.24 2.33 16 7 N -0.40 -5.69 18.54 42.15 0.78 -4.90 16 8 C -0.10 -0.97 4.80 -26.65 -0.13 -1.10 16 9 C 0.05 0.55 4.76 -3.84 -0.02 0.53 16 10 N -0.53 -6.90 4.08 -234.68 -0.96 -7.86 16 11 C 0.06 0.98 4.54 -3.83 -0.02 0.96 16 12 C -0.09 -1.66 1.85 -90.62 -0.17 -1.83 16 13 H 0.06 1.11 6.07 -51.93 -0.32 0.79 16 14 C -0.12 -2.20 8.79 37.16 0.33 -1.88 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 16 C -0.51 -14.04 8.41 -34.44 -0.29 -14.33 16 17 H 0.06 1.47 7.05 -52.49 -0.37 1.10 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 C 0.05 0.56 5.25 -3.83 -0.02 0.54 16 25 C -0.09 -0.88 4.16 -26.65 -0.11 -0.99 16 26 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.38 8.13 -51.93 -0.42 -0.05 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.45 7.32 -51.93 -0.38 0.07 16 32 H 0.10 1.36 5.70 -51.93 -0.30 1.07 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.04 0.66 7.54 -51.93 -0.39 0.27 16 36 H 0.05 1.05 6.95 -51.93 -0.36 0.69 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.03 0.39 7.32 -51.93 -0.38 0.01 16 42 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.11 0.96 8.04 -51.93 -0.42 0.54 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -31.57 356.58 -6.60 -38.17 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -7.12 Total: -4.71 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 0.31 Total: -6.95 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.56 Total: -38.76 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.70 Total: -9.53 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.57 -6.60 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877566422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.225 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds