Wall clock time and date at job start Tue Mar 31 2020 07:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00222 * 2 1 4 4 O 1.20822 * 119.99503 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99960 * 180.27663 * 3 2 1 6 6 C 1.47195 * 109.52507 * 59.60107 * 5 3 2 7 7 N 3.71510 * 144.92843 * 272.22803 * 2 1 3 8 8 C 1.53123 * 109.52743 * 299.41046 * 5 3 2 9 9 C 1.53036 * 109.28330 * 182.44338 * 8 5 3 10 10 N 1.46843 * 109.52289 * 59.17846 * 9 8 5 11 11 C 1.46894 * 111.00117 * 174.16318 * 10 9 8 12 12 C 1.52995 * 109.47144 * 307.99104 * 11 10 9 13 13 H 1.08997 * 109.47151 * 58.05360 * 12 11 10 14 14 C 1.53004 * 109.47177 * 298.05201 * 12 11 10 15 15 C 1.53002 * 109.47598 * 178.05154 * 12 11 10 16 16 C 1.50703 * 109.47407 * 184.99954 * 15 12 11 17 17 H 1.07994 * 119.99856 * 359.97438 * 16 15 12 18 18 C 1.37876 * 119.99718 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00558 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99773 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47105 * 60.00457 * 20 18 16 22 22 H 1.48502 * 109.47239 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47437 * 300.00404 * 20 18 16 24 24 C 1.46851 * 111.19780 * 298.25881 * 10 9 8 25 25 C 1.53041 * 109.52243 * 61.74506 * 24 10 9 26 26 H 1.09000 * 109.46774 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46851 * 299.99611 * 1 2 3 28 28 H 1.08995 * 109.47266 * 59.99640 * 1 2 3 29 29 H 1.09005 * 109.50203 * 302.38893 * 8 5 3 30 30 H 1.08999 * 109.50080 * 62.49453 * 8 5 3 31 31 H 1.08999 * 109.46063 * 299.16613 * 9 8 5 32 32 H 1.08995 * 109.46168 * 179.19921 * 9 8 5 33 33 H 1.09003 * 109.47309 * 67.98600 * 11 10 9 34 34 H 1.09001 * 109.47527 * 187.98717 * 11 10 9 35 35 H 1.09004 * 109.46692 * 59.99753 * 14 12 11 36 36 H 1.08997 * 109.47118 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47210 * 300.00123 * 14 12 11 38 38 H 1.09000 * 109.47313 * 305.00348 * 15 12 11 39 39 H 1.09001 * 109.47134 * 64.99773 * 15 12 11 40 40 H 0.96992 * 120.00448 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.46261 * 301.72429 * 24 10 9 42 42 H 1.09006 * 109.46020 * 181.75507 * 24 10 9 43 43 H 1.09004 * 109.49950 * 180.87957 * 25 24 10 44 44 H 1.08999 * 109.53489 * 60.78089 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0063 6 6 4.0891 0.6021 -1.2066 7 7 4.4926 0.0830 -2.1331 8 6 4.1199 0.5911 1.2470 9 6 5.6440 0.7275 1.2657 10 7 6.0095 2.1498 1.2603 11 6 7.4599 2.3212 1.4173 12 6 7.9368 1.5361 2.6408 13 1 7.6776 0.4842 2.5212 14 6 7.2600 2.0886 3.8969 15 6 9.4545 1.6750 2.7763 16 6 9.9398 0.8043 3.9065 17 1 9.2361 0.2115 4.4719 18 6 11.2822 0.7645 4.2186 19 7 12.1390 1.4868 3.5305 20 14 11.8836 -0.3142 5.6200 21 1 11.5390 -1.7308 5.3373 22 1 13.3567 -0.1795 5.7514 23 1 11.2333 0.1103 6.8858 24 6 5.5294 2.8168 0.0433 25 6 4.0018 2.7427 -0.0118 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.7012 1.0648 2.1350 30 1 3.8491 -0.4647 1.2352 31 1 6.0630 0.2416 0.3845 32 1 6.0400 0.2541 2.1640 33 1 7.9681 1.9504 0.5271 34 1 7.6884 3.3784 1.5523 35 1 6.1788 1.9896 3.8004 36 1 7.5994 1.5290 4.7685 37 1 7.5193 3.1405 4.0165 38 1 9.9322 1.3642 1.8472 39 1 9.7070 2.7148 2.9844 40 1 13.0834 1.4586 3.7498 41 1 5.9489 2.3211 -0.8320 42 1 5.8422 3.8610 0.0540 43 1 3.6468 3.2243 -0.9230 44 1 3.5807 3.2505 0.8560 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877566422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:46 Heat of formation + Delta-G solvation = -83.184297 kcal Electronic energy + Delta-G solvation = -24112.928141 eV Core-core repulsion = 20643.427649 eV Total energy + Delta-G solvation = -3469.500492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22281 -40.35921 -38.17372 -37.67339 -36.63729 -34.88961 -33.49432 -32.01873 -29.44626 -28.70275 -27.68903 -25.91978 -24.44985 -24.16992 -22.83178 -22.17237 -20.31735 -19.28123 -18.51834 -18.15394 -17.87936 -17.17237 -16.61175 -16.19558 -16.02853 -15.66246 -15.48830 -15.32504 -14.98259 -14.68424 -14.32870 -14.08233 -14.05322 -13.84927 -13.63126 -13.40019 -13.16200 -13.08292 -13.01414 -12.72034 -12.67447 -12.48430 -12.30661 -12.21365 -12.14757 -11.99377 -11.84104 -11.68980 -11.48118 -11.27301 -10.98358 -10.80626 -10.49373 -9.28130 -8.14701 -6.23550 0.75963 1.18509 1.42321 1.43101 1.44764 1.52177 1.79052 2.44047 2.49422 2.90998 3.19141 3.31527 3.44345 3.62523 3.97483 4.14985 4.21692 4.28819 4.30160 4.33872 4.37479 4.48663 4.57255 4.63709 4.70647 4.74695 4.83962 4.89205 4.95338 5.02133 5.05211 5.10766 5.13399 5.21534 5.36104 5.54132 5.59682 5.60223 5.86355 5.92790 6.05143 6.16722 6.18134 6.34036 6.47743 6.93177 7.44837 8.97242 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027387 B = 0.003094 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.136541 B = 9046.907963 C = 9268.899010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.487 3.513 4 O -0.500 6.500 5 C 0.055 3.945 6 C 0.231 3.769 7 N -0.443 5.443 8 C -0.095 4.095 9 C 0.043 3.957 10 N -0.524 5.524 11 C 0.072 3.928 12 C -0.077 4.077 13 H 0.059 0.941 14 C -0.113 4.113 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.064 0.936 18 C -0.003 4.003 19 N -0.937 5.937 20 Si 0.959 3.041 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.050 3.950 25 C -0.086 4.086 26 H 0.130 0.870 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.017 0.983 32 H 0.098 0.902 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.036 0.964 38 H -0.020 1.020 39 H -0.009 1.009 40 H 0.261 0.739 41 H 0.019 0.981 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.766 -0.390 -5.047 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.327 3.673 4 O -0.386 6.386 5 C 0.050 3.950 6 C -0.087 4.087 7 N -0.118 5.118 8 C -0.134 4.134 9 C -0.085 4.085 10 N -0.248 5.248 11 C -0.056 4.056 12 C -0.096 4.096 13 H 0.078 0.922 14 C -0.170 4.170 15 C -0.006 4.006 16 C -0.564 4.564 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.578 5.578 20 Si 0.784 3.216 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.078 4.078 25 C -0.125 4.125 26 H 0.148 0.852 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.122 0.878 31 H 0.036 0.964 32 H 0.116 0.884 33 H 0.031 0.969 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.055 0.945 38 H -0.002 1.002 39 H 0.009 0.991 40 H 0.069 0.931 41 H 0.037 0.963 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.466 -0.627 -6.082 25.218 hybrid contribution 1.217 -0.585 -0.105 1.354 sum -23.249 -1.212 -6.187 24.088 Atomic orbital electron populations 1.23678 0.73736 1.06048 1.03208 1.86521 1.25751 1.31980 1.83136 1.22754 0.90046 0.82032 0.72430 1.90708 1.66417 1.36655 1.44853 1.18425 0.87874 0.98923 0.89758 1.28559 0.93424 0.93023 0.93693 1.81258 1.08831 1.09656 1.12045 1.21824 0.94693 1.02500 0.94367 1.22284 0.95156 0.89237 1.01813 1.62068 1.13251 1.12682 1.36829 1.22044 0.86410 1.00761 0.96371 1.21137 0.95121 0.98456 0.94895 0.92246 1.21497 1.00032 0.99411 0.96077 1.19014 0.91860 0.95105 0.94590 1.21630 0.92720 1.25772 1.16311 0.91783 1.25948 0.97480 0.97279 0.99339 1.70095 1.02858 1.42483 1.42398 0.85592 0.76871 0.79379 0.79773 1.19297 1.21368 1.18998 1.22208 0.94428 1.01052 0.90111 1.21667 0.94999 0.89365 1.06457 0.85178 0.90637 0.91765 0.86082 0.87776 0.96438 0.88385 0.96898 0.90657 0.90633 0.94459 0.94451 1.00162 0.99063 0.93058 0.96283 0.88047 0.88874 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.44 16 2 O -0.36 -5.63 10.40 -51.41 -0.53 -6.17 16 3 C 0.49 8.60 6.53 71.23 0.47 9.07 16 4 O -0.50 -10.32 15.72 21.98 0.35 -9.98 16 5 C 0.06 0.98 0.66 -54.66 -0.04 0.94 16 6 C 0.23 5.32 11.52 89.44 1.03 6.35 16 7 N -0.44 -12.47 18.54 20.00 0.37 -12.10 16 8 C -0.10 -1.55 4.80 30.65 0.15 -1.40 16 9 C 0.04 0.99 4.76 86.33 0.41 1.40 16 10 N -0.52 -12.83 4.08 -896.39 -3.66 -16.49 16 11 C 0.07 2.31 4.54 86.30 0.39 2.70 16 12 C -0.08 -2.96 1.85 -10.79 -0.02 -2.98 16 13 H 0.06 2.26 6.07 -2.39 -0.01 2.24 16 14 C -0.11 -3.89 8.79 71.98 0.63 -3.25 16 15 C 0.03 1.64 4.45 29.85 0.13 1.77 16 16 C -0.53 -29.13 8.41 25.60 0.22 -28.92 16 17 H 0.06 3.36 7.05 -2.91 -0.02 3.34 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 19 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 20 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 C 0.05 1.03 5.25 86.33 0.45 1.49 16 25 C -0.09 -1.43 4.16 30.65 0.13 -1.30 16 26 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.63 8.13 -2.39 -0.02 0.61 16 28 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 29 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.02 0.46 7.32 -2.39 -0.02 0.44 16 32 H 0.10 2.40 5.70 -2.39 -0.01 2.38 16 33 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.11 7.54 -2.38 -0.02 2.09 16 36 H 0.04 1.39 6.95 -2.39 -0.02 1.38 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.02 0.45 7.32 -2.39 -0.02 0.43 16 42 H 0.10 1.89 8.12 -2.38 -0.02 1.87 16 43 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 44 H 0.12 1.75 8.04 -2.39 -0.02 1.73 16 Total: -1.00 -69.18 356.58 5.42 -63.76 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 0.98 Total: 4.35 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.61 Total: -12.43 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -3.00 Total: -85.57 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.19 Total: -16.14 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -69.18 5.42 -63.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877566422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.425 kcal (2) G-P(sol) polarization free energy of solvation -69.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds