Wall clock time and date at job start Tue Mar 31 2020 07:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.89122 * 2 1 4 4 C 1.54909 * 111.00679 * 236.11491 * 2 1 3 5 5 N 1.47422 * 104.83695 * 204.88326 * 4 2 1 6 6 C 1.34771 * 125.64813 * 204.09406 * 5 4 2 7 7 O 1.21285 * 120.00109 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99972 * 179.97438 * 6 5 4 9 9 C 1.50701 * 109.47074 * 179.97438 * 8 6 5 10 10 C 1.29985 * 118.74212 * 94.72956 * 9 8 6 11 11 C 1.50227 * 122.86762 * 180.69158 * 10 9 8 12 12 O 1.42910 * 110.13223 * 344.39841 * 11 10 9 13 13 C 1.43301 * 113.01627 * 50.18399 * 12 11 10 14 14 C 1.50386 * 118.74474 * 275.00081 * 9 8 6 15 15 C 1.47024 * 108.70277 * 24.35528 * 5 4 2 16 16 C 1.54336 * 107.26400 * 358.58823 * 15 5 4 17 17 H 1.08990 * 110.67109 * 96.52178 * 16 15 5 18 18 N 1.46501 * 110.85013 * 219.67488 * 16 15 5 19 19 C 1.36937 * 120.00078 * 268.69633 * 18 16 15 20 20 H 1.08003 * 119.99821 * 359.97438 * 19 18 16 21 21 C 1.38806 * 120.00352 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00204 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47192 * 59.99594 * 23 21 19 25 25 H 1.48493 * 109.47047 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46812 * 299.99732 * 23 21 19 27 27 H 1.08994 * 109.47482 * 182.42747 * 1 2 3 28 28 H 1.08999 * 109.47070 * 302.43302 * 1 2 3 29 29 H 1.09003 * 109.47160 * 62.42880 * 1 2 3 30 30 H 1.09003 * 110.36708 * 86.03961 * 4 2 1 31 31 H 1.09003 * 110.45967 * 323.76898 * 4 2 1 32 32 H 1.08994 * 109.46890 * 59.99825 * 8 6 5 33 33 H 1.08995 * 109.46889 * 299.99829 * 8 6 5 34 34 H 1.08004 * 118.56424 * 0.67128 * 10 9 8 35 35 H 1.08997 * 109.36165 * 224.20044 * 11 10 9 36 36 H 1.09000 * 109.25372 * 104.53005 * 11 10 9 37 37 H 1.09006 * 109.68202 * 172.07443 * 13 12 11 38 38 H 1.09004 * 109.68493 * 51.51791 * 13 12 11 39 39 H 1.09002 * 109.44690 * 283.13334 * 14 9 8 40 40 H 1.09001 * 109.45033 * 43.05523 * 14 9 8 41 41 H 1.08994 * 109.88332 * 118.13060 * 15 5 4 42 42 H 1.08999 * 109.88290 * 239.30424 * 15 5 4 43 43 H 0.96999 * 120.00135 * 88.68993 * 18 16 15 44 44 H 0.96998 * 120.00090 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4274 -1.2422 -0.7740 6 6 4.4478 -1.5601 -1.5951 7 8 4.3003 -1.4991 -2.7974 8 6 5.7721 -1.9914 -1.0192 9 6 6.7346 -2.2880 -2.1402 10 6 7.5472 -1.3516 -2.5306 11 6 8.5331 -1.5413 -3.6482 12 8 8.6884 -2.9324 -3.9362 13 6 7.4388 -3.6101 -4.1168 14 6 6.7140 -3.6541 -2.7687 15 6 3.4666 -1.2786 0.6952 16 6 2.0869 -0.8078 1.2020 17 1 1.4463 -1.6615 1.4228 18 7 2.2293 0.0496 2.3813 19 6 2.2014 -0.5003 3.6351 20 1 2.0739 -1.5661 3.7545 21 6 2.3369 0.3120 4.7524 22 7 2.4927 1.6109 4.6068 23 14 2.2981 -0.4381 6.4628 24 1 3.4031 -1.4208 6.5975 25 1 2.4618 0.6339 7.4772 26 1 0.9977 -1.1235 6.6732 27 1 -0.3634 -1.0267 0.0435 28 1 -0.3633 0.5511 0.8674 29 1 -0.3633 0.4757 -0.9110 30 1 2.1554 -0.1715 -2.0839 31 1 1.4528 -1.6703 -1.4044 32 1 5.6310 -2.8876 -0.4153 33 1 6.1745 -1.1928 -0.3960 34 1 7.5119 -0.3953 -2.0298 35 1 9.4961 -1.1232 -3.3553 36 1 8.1711 -1.0263 -4.5380 37 1 7.6196 -4.6255 -4.4697 38 1 6.8305 -3.0713 -4.8433 39 1 7.2146 -4.3640 -2.1103 40 1 5.6813 -3.9676 -2.9218 41 1 3.6615 -2.2955 1.0357 42 1 4.2429 -0.6073 1.0622 43 1 2.3435 1.0069 2.2740 44 1 2.5878 2.1785 5.3876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939058720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:04 Heat of formation + Delta-G solvation = -58.153907 kcal Electronic energy + Delta-G solvation = -23866.961565 eV Core-core repulsion = 20398.546472 eV Total energy + Delta-G solvation = -3468.415093 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.14913 -39.25872 -37.60076 -34.73674 -34.10613 -32.56049 -31.22303 -30.78573 -29.36278 -27.55572 -26.20715 -24.35597 -24.00431 -23.57232 -21.55499 -20.00838 -19.13815 -18.10887 -17.21663 -16.84364 -16.59464 -16.27933 -15.87147 -15.30324 -14.94666 -14.88480 -14.20862 -13.74497 -13.60396 -13.37395 -13.18504 -12.98824 -12.87672 -12.65306 -12.47406 -12.40236 -12.11831 -11.94516 -11.56025 -11.35533 -11.18813 -11.04442 -10.79290 -10.68782 -10.65203 -10.32586 -10.06443 -9.88433 -9.78287 -9.69228 -9.06164 -8.89636 -8.36675 -7.15418 -5.90242 -3.21522 1.98329 2.79920 3.28275 3.36104 3.41457 3.42033 3.72971 4.46906 4.55225 4.58664 4.70307 4.85031 5.06396 5.09969 5.12444 5.18045 5.20133 5.29162 5.38091 5.40294 5.51934 5.54043 5.58263 5.62657 5.70367 5.73157 5.79279 5.80316 5.87295 5.95764 6.15176 6.20532 6.32272 6.37051 6.44521 6.52352 6.58283 6.73171 6.81265 6.97869 7.57211 7.76791 8.26727 8.34324 9.38999 9.92383 10.27284 11.31484 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.003377 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.897369 B = 8289.978198 C = 9214.229400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.614 5.614 6 C 0.529 3.471 7 O -0.551 6.551 8 C -0.105 4.105 9 C -0.085 4.085 10 C -0.195 4.195 11 C 0.094 3.906 12 O -0.382 6.382 13 C 0.061 3.939 14 C -0.116 4.116 15 C 0.071 3.929 16 C 0.177 3.823 17 H 0.069 0.931 18 N -0.711 5.711 19 C -0.251 4.251 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.929 5.929 23 Si 0.908 3.092 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.387 0.613 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.784 -7.382 -14.286 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.101 0.899 4 C -0.009 4.009 5 N -0.347 5.347 6 C 0.318 3.682 7 O -0.429 6.429 8 C -0.145 4.145 9 C -0.086 4.086 10 C -0.213 4.213 11 C 0.018 3.982 12 O -0.301 6.301 13 C -0.016 4.016 14 C -0.153 4.153 15 C -0.055 4.055 16 C 0.065 3.935 17 H 0.086 0.914 18 N -0.350 5.350 19 C -0.382 4.382 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.739 3.261 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.221 0.779 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.926 -7.533 -14.773 17.610 hybrid contribution -0.236 0.183 1.266 1.301 sum 5.691 -7.350 -13.507 16.397 Atomic orbital electron populations 1.21592 0.93854 1.01808 1.01748 1.22655 0.96362 0.99785 0.94680 0.89914 1.22241 0.82833 0.98065 0.97759 1.48572 1.12050 1.65961 1.08141 1.20160 0.84672 0.77223 0.86172 1.90663 1.83293 1.54313 1.14643 1.20772 0.92309 1.03773 0.97611 1.20413 0.95489 0.95751 0.96903 1.22680 0.99084 0.99484 1.00080 1.21376 0.98824 0.82623 0.95375 1.88086 1.29165 1.21363 1.91485 1.22625 0.85379 0.97715 0.95867 1.21029 1.01895 0.94940 0.97400 1.23371 1.03480 1.01215 0.77480 1.21245 0.91544 0.93820 0.86900 0.91353 1.42354 1.86338 1.06220 1.00115 1.19202 1.43177 0.92576 0.83211 0.91008 1.24766 1.02173 0.95426 0.98002 1.69649 1.55761 1.02870 1.29348 0.86264 0.77926 0.77855 0.84093 1.21128 1.21637 1.21132 0.92816 0.91403 0.93226 0.91092 0.91761 0.88253 0.88141 0.86662 0.88134 0.92021 0.88643 0.92484 0.90072 0.89810 0.92209 0.90859 0.77872 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.30 37.15 0.35 -1.48 16 2 C -0.11 -1.77 3.27 -88.47 -0.29 -2.06 16 3 H 0.08 1.36 8.01 -51.93 -0.42 0.95 16 4 C 0.11 1.67 6.37 -2.53 -0.02 1.66 16 5 N -0.61 -9.52 3.33 -170.51 -0.57 -10.09 16 6 C 0.53 8.27 7.84 -10.98 -0.09 8.19 16 7 O -0.55 -10.04 16.29 5.55 0.09 -9.95 16 8 C -0.11 -1.34 4.96 -29.03 -0.14 -1.48 16 9 C -0.09 -1.07 4.40 -100.93 -0.44 -1.51 16 10 C -0.19 -2.33 9.54 -35.97 -0.34 -2.67 16 11 C 0.09 1.00 7.04 35.78 0.25 1.25 16 12 O -0.38 -4.58 10.84 -35.23 -0.38 -4.96 16 13 C 0.06 0.64 6.89 37.22 0.26 0.90 16 14 C -0.12 -1.28 6.09 -27.97 -0.17 -1.45 16 15 C 0.07 1.15 6.25 -3.06 -0.02 1.13 16 16 C 0.18 3.18 3.08 -66.09 -0.20 2.98 16 17 H 0.07 1.24 7.96 -51.93 -0.41 0.82 16 18 N -0.71 -16.21 5.15 -51.65 -0.27 -16.48 16 19 C -0.25 -6.43 9.96 -15.06 -0.15 -6.58 16 20 H 0.07 1.78 7.83 -52.48 -0.41 1.36 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 22 N -0.93 -26.59 13.06 55.49 0.72 -25.87 16 23 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.05 8.04 -51.93 -0.42 0.64 16 31 H 0.06 0.88 8.04 -51.93 -0.42 0.47 16 32 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 33 H 0.10 1.22 7.87 -51.93 -0.41 0.82 16 34 H 0.12 1.30 7.84 -52.48 -0.41 0.89 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 43 H 0.39 9.53 7.76 -40.82 -0.32 9.21 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -30.16 359.19 -8.53 -38.68 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.41 Total: 8.45 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.11 Total: -1.42 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.11 Total: -52.43 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.29 Total: -14.91 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.16 -8.53 -38.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939058720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.470 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds