Wall clock time and date at job start Tue Mar 31 2020 07:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.89122 * 2 1 4 4 C 1.54909 * 111.00679 * 236.11491 * 2 1 3 5 5 N 1.47422 * 104.83695 * 204.88326 * 4 2 1 6 6 C 1.34771 * 125.64813 * 204.09406 * 5 4 2 7 7 O 1.21285 * 120.00109 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99972 * 179.97438 * 6 5 4 9 9 C 1.50701 * 109.47074 * 179.97438 * 8 6 5 10 10 C 1.29985 * 118.74212 * 94.72956 * 9 8 6 11 11 C 1.50227 * 122.86762 * 180.69158 * 10 9 8 12 12 O 1.42910 * 110.13223 * 344.39841 * 11 10 9 13 13 C 1.43301 * 113.01627 * 50.18399 * 12 11 10 14 14 C 1.50386 * 118.74474 * 275.00081 * 9 8 6 15 15 C 1.47024 * 108.70277 * 24.35528 * 5 4 2 16 16 C 1.54336 * 107.26400 * 358.58823 * 15 5 4 17 17 H 1.08990 * 110.67109 * 96.52178 * 16 15 5 18 18 N 1.46501 * 110.85013 * 219.67488 * 16 15 5 19 19 C 1.36937 * 120.00078 * 268.69633 * 18 16 15 20 20 H 1.08003 * 119.99821 * 359.97438 * 19 18 16 21 21 C 1.38806 * 120.00352 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00204 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47192 * 59.99594 * 23 21 19 25 25 H 1.48493 * 109.47047 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46812 * 299.99732 * 23 21 19 27 27 H 1.08994 * 109.47482 * 182.42747 * 1 2 3 28 28 H 1.08999 * 109.47070 * 302.43302 * 1 2 3 29 29 H 1.09003 * 109.47160 * 62.42880 * 1 2 3 30 30 H 1.09003 * 110.36708 * 86.03961 * 4 2 1 31 31 H 1.09003 * 110.45967 * 323.76898 * 4 2 1 32 32 H 1.08994 * 109.46890 * 59.99825 * 8 6 5 33 33 H 1.08995 * 109.46889 * 299.99829 * 8 6 5 34 34 H 1.08004 * 118.56424 * 0.67128 * 10 9 8 35 35 H 1.08997 * 109.36165 * 224.20044 * 11 10 9 36 36 H 1.09000 * 109.25372 * 104.53005 * 11 10 9 37 37 H 1.09006 * 109.68202 * 172.07443 * 13 12 11 38 38 H 1.09004 * 109.68493 * 51.51791 * 13 12 11 39 39 H 1.09002 * 109.44690 * 283.13334 * 14 9 8 40 40 H 1.09001 * 109.45033 * 43.05523 * 14 9 8 41 41 H 1.08994 * 109.88332 * 118.13060 * 15 5 4 42 42 H 1.08999 * 109.88290 * 239.30424 * 15 5 4 43 43 H 0.96999 * 120.00135 * 88.68993 * 18 16 15 44 44 H 0.96998 * 120.00090 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4274 -1.2422 -0.7740 6 6 4.4478 -1.5601 -1.5951 7 8 4.3003 -1.4991 -2.7974 8 6 5.7721 -1.9914 -1.0192 9 6 6.7346 -2.2880 -2.1402 10 6 7.5472 -1.3516 -2.5306 11 6 8.5331 -1.5413 -3.6482 12 8 8.6884 -2.9324 -3.9362 13 6 7.4388 -3.6101 -4.1168 14 6 6.7140 -3.6541 -2.7687 15 6 3.4666 -1.2786 0.6952 16 6 2.0869 -0.8078 1.2020 17 1 1.4463 -1.6615 1.4228 18 7 2.2293 0.0496 2.3813 19 6 2.2014 -0.5003 3.6351 20 1 2.0739 -1.5661 3.7545 21 6 2.3369 0.3120 4.7524 22 7 2.4927 1.6109 4.6068 23 14 2.2981 -0.4381 6.4628 24 1 3.4031 -1.4208 6.5975 25 1 2.4618 0.6339 7.4772 26 1 0.9977 -1.1235 6.6732 27 1 -0.3634 -1.0267 0.0435 28 1 -0.3633 0.5511 0.8674 29 1 -0.3633 0.4757 -0.9110 30 1 2.1554 -0.1715 -2.0839 31 1 1.4528 -1.6703 -1.4044 32 1 5.6310 -2.8876 -0.4153 33 1 6.1745 -1.1928 -0.3960 34 1 7.5119 -0.3953 -2.0298 35 1 9.4961 -1.1232 -3.3553 36 1 8.1711 -1.0263 -4.5380 37 1 7.6196 -4.6255 -4.4697 38 1 6.8305 -3.0713 -4.8433 39 1 7.2146 -4.3640 -2.1103 40 1 5.6813 -3.9676 -2.9218 41 1 3.6615 -2.2955 1.0357 42 1 4.2429 -0.6073 1.0622 43 1 2.3435 1.0069 2.2740 44 1 2.5878 2.1785 5.3876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939058720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:04 Heat of formation + Delta-G solvation = -76.660729 kcal Electronic energy + Delta-G solvation = -23867.764081 eV Core-core repulsion = 20398.546472 eV Total energy + Delta-G solvation = -3469.217609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32659 -40.24846 -38.91472 -35.88846 -35.65556 -33.95652 -32.51612 -32.05184 -30.38373 -29.11644 -27.32372 -25.87532 -25.16190 -24.53027 -22.96998 -21.39746 -20.35577 -19.10764 -19.00198 -18.09758 -17.60917 -17.23691 -17.06066 -16.57906 -16.28738 -15.91713 -15.64516 -15.32975 -14.83187 -14.62647 -14.48050 -14.11384 -14.00878 -13.85654 -13.57823 -13.47540 -13.25670 -12.99162 -12.92986 -12.83565 -12.79331 -12.26023 -12.24919 -12.15950 -12.03297 -11.68537 -11.53311 -11.45638 -11.07596 -10.89286 -10.63323 -9.83279 -9.65905 -9.05275 -7.93336 -5.23234 1.03884 1.51719 1.52859 1.56788 1.58892 2.07071 2.58126 2.92259 3.37840 3.44181 3.62892 3.71396 3.81584 3.88325 3.92697 4.01828 4.22721 4.25323 4.34778 4.38647 4.41867 4.46467 4.50253 4.55265 4.61570 4.66657 4.68323 4.78380 4.85297 4.88414 4.91949 4.98383 5.10604 5.13505 5.24765 5.32209 5.46091 5.49260 5.56138 5.83602 6.13995 6.26987 6.50246 7.09864 7.34956 8.06457 8.30254 9.29323 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.003377 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.897369 B = 8289.978198 C = 9214.229400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 H 0.068 0.932 4 C 0.117 3.883 5 N -0.614 5.614 6 C 0.528 3.472 7 O -0.577 6.577 8 C -0.100 4.100 9 C -0.104 4.104 10 C -0.199 4.199 11 C 0.091 3.909 12 O -0.395 6.395 13 C 0.059 3.941 14 C -0.114 4.114 15 C 0.084 3.916 16 C 0.171 3.829 17 H 0.073 0.927 18 N -0.721 5.721 19 C -0.242 4.242 20 H 0.082 0.918 21 C -0.069 4.069 22 N -0.968 5.968 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.301 1.301 26 H -0.278 1.278 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.375 0.625 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 -9.042 -14.908 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 H 0.087 0.913 4 C -0.006 4.006 5 N -0.348 5.348 6 C 0.318 3.682 7 O -0.458 6.458 8 C -0.140 4.140 9 C -0.104 4.104 10 C -0.217 4.217 11 C 0.015 3.985 12 O -0.314 6.314 13 C -0.018 4.018 14 C -0.151 4.151 15 C -0.042 4.042 16 C 0.060 3.940 17 H 0.091 0.909 18 N -0.360 5.360 19 C -0.373 4.373 20 H 0.100 0.900 21 C -0.262 4.262 22 N -0.618 5.618 23 Si 0.798 3.202 24 H -0.203 1.203 25 H -0.227 1.227 26 H -0.204 1.204 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.207 0.793 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.110 -9.242 -15.428 18.994 hybrid contribution -0.311 0.691 1.353 1.550 sum 5.799 -8.551 -14.075 17.460 Atomic orbital electron populations 1.21551 0.92428 1.02550 1.01932 1.22552 0.97489 0.98737 0.93769 0.91318 1.22265 0.82698 0.98502 0.97102 1.48606 1.12531 1.65918 1.07701 1.20629 0.85316 0.76487 0.85787 1.90650 1.83803 1.55523 1.15790 1.20784 0.90787 1.04479 0.97910 1.20604 0.95754 0.96746 0.97323 1.22912 0.99151 0.99450 1.00224 1.21527 0.99529 0.82355 0.95122 1.88069 1.29896 1.21950 1.91499 1.22740 0.84860 0.98718 0.95438 1.21044 1.01831 0.94418 0.97846 1.23024 1.01648 1.01542 0.77942 1.21437 0.92612 0.93665 0.86243 0.90941 1.42469 1.86553 1.06134 1.00849 1.19603 1.40512 0.92952 0.84268 0.90049 1.25497 1.03436 0.95829 1.01426 1.69802 1.58264 1.04125 1.29593 0.85292 0.78186 0.76811 0.79942 1.20287 1.22744 1.20450 0.91562 0.93469 0.91010 0.91127 0.90136 0.86677 0.87753 0.86482 0.86229 0.91521 0.86423 0.93239 0.88926 0.90265 0.90743 0.92321 0.79306 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.30 71.98 0.67 -2.64 16 2 C -0.11 -3.13 3.27 -9.40 -0.03 -3.16 16 3 H 0.07 2.25 8.01 -2.39 -0.02 2.23 16 4 C 0.12 3.22 6.37 86.86 0.55 3.78 16 5 N -0.61 -18.12 3.33 -811.77 -2.70 -20.82 16 6 C 0.53 15.81 7.84 87.66 0.69 16.49 16 7 O -0.58 -20.45 16.29 -3.04 -0.05 -20.50 16 8 C -0.10 -2.41 4.96 29.10 0.14 -2.27 16 9 C -0.10 -2.46 4.40 -15.54 -0.07 -2.53 16 10 C -0.20 -4.53 9.54 26.55 0.25 -4.27 16 11 C 0.09 1.79 7.04 71.09 0.50 2.29 16 12 O -0.40 -8.83 10.84 -148.98 -1.62 -10.44 16 13 C 0.06 1.15 6.89 72.02 0.50 1.64 16 14 C -0.11 -2.36 6.09 29.79 0.18 -2.17 16 15 C 0.08 2.63 6.25 86.73 0.54 3.17 16 16 C 0.17 5.94 3.08 46.19 0.14 6.08 16 17 H 0.07 2.48 7.96 -2.39 -0.02 2.46 16 18 N -0.72 -32.84 5.15 -317.31 -1.64 -34.47 16 19 C -0.24 -12.25 9.96 84.03 0.84 -11.41 16 20 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 21 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 22 N -0.97 -56.39 13.06 21.65 0.28 -56.10 16 23 Si 0.97 43.61 29.55 68.60 2.03 45.64 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 27 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 31 H 0.08 1.99 8.04 -2.39 -0.02 1.98 16 32 H 0.12 2.38 8.13 -2.39 -0.02 2.36 16 33 H 0.10 2.42 7.87 -2.39 -0.02 2.40 16 34 H 0.12 2.54 7.84 -2.91 -0.02 2.52 16 35 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.06 2.03 8.03 -2.39 -0.02 2.01 16 43 H 0.37 18.78 7.76 -92.71 -0.72 18.06 16 44 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -63.73 359.19 1.94 -61.79 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: 0.26 Total: 33.18 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.38 Total: 1.73 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -4.05 Total: -111.40 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.67 Total: -30.94 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -63.73 1.94 -61.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939058720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.871 kcal (2) G-P(sol) polarization free energy of solvation -63.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds