Wall clock time and date at job start Tue Mar 31 2020 07:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52676 * 2 1 4 4 C 1.53195 * 109.49933 * 239.91176 * 2 1 3 5 5 N 1.46922 * 108.77658 * 185.41511 * 4 2 1 6 6 C 1.36940 * 120.63115 * 233.63222 * 5 4 2 7 7 H 1.07995 * 119.99861 * 27.66186 * 6 5 4 8 8 C 1.38813 * 119.99797 * 207.66273 * 6 5 4 9 9 N 1.31619 * 120.00153 * 17.36978 * 8 6 5 10 10 Si 1.86799 * 119.99979 * 197.37234 * 8 6 5 11 11 H 1.48505 * 109.47059 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47395 * 119.99619 * 10 8 6 13 13 H 1.48493 * 109.47139 * 240.00284 * 10 8 6 14 14 C 1.46932 * 118.73867 * 53.60941 * 5 4 2 15 15 C 1.53184 * 108.77491 * 306.39363 * 14 5 4 16 16 C 1.53042 * 109.31716 * 54.63285 * 15 14 5 17 17 H 1.08997 * 109.46165 * 178.61085 * 16 15 14 18 18 N 1.46502 * 109.45862 * 58.64109 * 16 15 14 19 19 C 1.34776 * 120.00377 * 84.97534 * 18 16 15 20 20 O 1.21287 * 119.99454 * 359.97438 * 19 18 16 21 21 C 1.50694 * 120.00350 * 179.97438 * 19 18 16 22 22 H 1.08995 * 115.50716 * 325.37094 * 21 19 18 23 23 C 1.53001 * 117.43601 * 110.65056 * 21 19 18 24 24 H 1.09011 * 119.80320 * 355.36570 * 23 21 19 25 25 C 1.54472 * 118.06749 * 198.08661 * 23 21 19 26 26 O 1.44427 * 104.80168 * 273.16935 * 25 23 21 27 27 C 1.44417 * 105.27517 * 40.51561 * 26 25 23 28 28 C 1.53003 * 117.43490 * 179.97438 * 21 19 18 29 29 H 1.09001 * 119.80412 * 5.65688 * 28 21 19 30 30 H 1.09000 * 109.46929 * 299.92851 * 1 2 3 31 31 H 1.09006 * 109.46623 * 59.91828 * 1 2 3 32 32 H 1.08996 * 109.47366 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58315 * 65.63059 * 4 2 1 34 34 H 1.08993 * 109.70114 * 305.27720 * 4 2 1 35 35 H 0.97001 * 119.99901 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.58427 * 186.59869 * 14 5 4 37 37 H 1.09006 * 109.58324 * 66.17951 * 14 5 4 38 38 H 1.09002 * 109.49652 * 294.67899 * 15 14 5 39 39 H 1.09004 * 109.52461 * 174.59868 * 15 14 5 40 40 H 0.97006 * 119.99864 * 264.97346 * 18 16 15 41 41 H 1.09007 * 110.37101 * 154.34286 * 25 23 21 42 42 H 1.08997 * 110.37423 * 32.00628 * 25 23 21 43 43 H 1.09004 * 110.37501 * 200.65233 * 27 26 25 44 44 H 1.09006 * 110.46742 * 78.36419 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7240 -1.2495 5 7 3.5046 -0.8293 -1.1694 6 6 4.2936 -0.3788 -2.1940 7 1 3.9466 0.4211 -2.8312 8 6 5.5395 -0.9502 -2.4134 9 7 5.8285 -2.1211 -1.8862 10 14 6.8058 -0.0576 -3.4570 11 1 6.2386 1.2312 -3.9290 12 1 8.0206 0.2051 -2.6443 13 1 7.1650 -0.8988 -4.6267 14 6 4.1052 -1.4268 0.0310 15 6 3.5708 -0.6950 1.2661 16 6 2.0407 -0.7230 1.2484 17 1 1.6581 -0.2244 2.1390 18 7 1.5782 -2.1130 1.2307 19 6 1.4492 -2.7952 2.3858 20 8 1.7165 -2.2584 3.4401 21 6 0.9729 -4.2248 2.3676 22 1 0.2374 -4.4647 1.5998 23 6 1.9866 -5.3103 2.7349 24 1 3.0260 -5.0401 2.9219 25 6 1.6737 -6.7660 2.3236 26 8 0.8767 -7.2924 3.4070 27 6 -0.0184 -6.2209 3.7763 28 6 0.8484 -4.9435 3.7125 29 1 1.0115 -4.3923 4.6386 30 1 -0.3633 0.5127 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7638 -0.1581 -2.1389 34 1 1.6053 -1.7216 -1.3004 35 1 6.6990 -2.5206 -2.0399 36 1 5.1895 -1.3248 -0.0136 37 1 3.8374 -2.4820 0.0870 38 1 3.9159 0.3388 1.2541 39 1 3.9332 -1.1892 2.1676 40 1 1.3647 -2.5424 0.3874 41 1 2.5961 -7.3373 2.2188 42 1 1.1074 -6.7839 1.3924 43 1 -0.3959 -6.3733 4.7875 44 1 -0.8454 -6.1543 3.0693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942564812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:29 Heat of formation + Delta-G solvation = -31.095940 kcal Electronic energy + Delta-G solvation = -24757.966186 eV Core-core repulsion = 21290.724415 eV Total energy + Delta-G solvation = -3467.241771 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79806 -39.43151 -37.59681 -34.64968 -34.25409 -32.52233 -31.16397 -30.09315 -28.89605 -26.54360 -25.80646 -25.06997 -22.74781 -21.81334 -21.13709 -20.79744 -20.11322 -18.59849 -17.71316 -16.75611 -16.08896 -15.87885 -15.30375 -15.06183 -14.87405 -14.65461 -14.10194 -13.93490 -13.76014 -13.36224 -13.14908 -12.92178 -12.73029 -12.59698 -12.13909 -11.91884 -11.71251 -11.52795 -11.40565 -11.12286 -10.85964 -10.73994 -10.53505 -10.41336 -10.35911 -10.24553 -10.08293 -9.84442 -9.78017 -9.61276 -9.45564 -8.63385 -8.50076 -6.72809 -5.83878 -3.26532 2.53036 3.22746 3.34017 3.42494 3.44100 3.58434 3.83347 4.40901 4.44297 4.45340 4.72636 4.73414 4.96711 5.03561 5.14869 5.18626 5.27210 5.33299 5.45412 5.46321 5.50291 5.56030 5.58995 5.85663 5.90624 5.93605 5.95861 6.04655 6.12130 6.23576 6.32241 6.41028 6.49514 6.59594 6.62070 6.72578 6.85689 6.95741 7.32762 7.62564 7.75509 7.80824 8.39318 8.46198 9.15827 9.79142 10.34865 11.24231 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.004264 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.688644 B = 6565.271418 C = 7499.641064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 H 0.082 0.918 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.175 3.825 15 C -0.154 4.154 16 C 0.160 3.840 17 H 0.072 0.928 18 N -0.703 5.703 19 C 0.543 3.457 20 O -0.547 6.547 21 C -0.147 4.147 22 H 0.121 0.879 23 C -0.163 4.163 24 H 0.129 0.871 25 C 0.074 3.926 26 O -0.373 6.373 27 C 0.073 3.927 28 C -0.163 4.163 29 H 0.134 0.866 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.013 0.987 35 H 0.253 0.747 36 H 0.086 0.914 37 H 0.018 0.982 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.402 0.598 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.875 -4.690 7.489 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 H 0.100 0.900 4 C 0.025 3.975 5 N -0.314 5.314 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.049 3.951 15 C -0.194 4.194 16 C 0.056 3.944 17 H 0.091 0.909 18 N -0.354 5.354 19 C 0.328 3.672 20 O -0.425 6.425 21 C -0.168 4.168 22 H 0.139 0.861 23 C -0.182 4.182 24 H 0.147 0.853 25 C -0.003 4.003 26 O -0.292 6.292 27 C -0.003 4.003 28 C -0.182 4.182 29 H 0.152 0.848 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.238 0.762 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.500 -4.602 8.284 14.902 hybrid contribution 0.696 0.510 -1.090 1.390 sum -10.804 -4.092 7.194 13.610 Atomic orbital electron populations 1.21762 0.95748 1.01307 1.01109 1.21954 0.94569 1.00767 0.96703 0.89991 1.20901 0.86120 0.96089 0.94374 1.44075 0.99139 1.71560 1.16597 1.19214 0.98235 1.12368 1.08580 0.91626 1.25020 0.99859 0.95356 0.99233 1.70041 1.21836 1.14634 1.48010 0.86251 0.81740 0.79277 0.79664 1.20242 1.21552 1.21725 1.20720 0.99287 0.92925 0.82179 1.22567 0.94223 1.01942 1.00712 1.20912 0.95107 0.80438 0.97914 0.90948 1.46026 1.66551 1.14235 1.08559 1.19359 0.77445 0.86295 0.84094 1.90672 1.50996 1.69921 1.30952 1.22399 1.02769 0.91712 0.99968 0.86126 1.24158 0.97022 0.93650 1.03363 0.85288 1.22959 0.96205 0.91017 0.90086 1.89182 1.51277 1.36283 1.52442 1.22942 0.91810 0.83980 1.01594 1.24155 0.99815 0.99315 0.94932 0.84838 0.93304 0.92713 0.93095 0.92502 0.96890 0.93677 0.89608 0.96353 0.91797 0.92801 0.76211 0.87929 0.91533 0.88246 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.05 37.16 0.34 -1.48 16 2 C -0.12 -1.90 2.67 -90.50 -0.24 -2.14 16 3 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.15 2.89 5.50 -3.71 -0.02 2.87 16 5 N -0.59 -13.98 2.99 -172.32 -0.52 -14.50 16 6 C -0.25 -6.74 9.59 -15.06 -0.14 -6.88 16 7 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 8 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -25.52 11.19 55.49 0.62 -24.90 16 10 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.17 4.03 5.05 -3.71 -0.02 4.01 16 15 C -0.15 -3.02 5.77 -26.61 -0.15 -3.17 16 16 C 0.16 2.70 2.21 -67.89 -0.15 2.55 16 17 H 0.07 1.25 7.58 -51.93 -0.39 0.85 16 18 N -0.70 -10.80 3.59 -53.76 -0.19 -11.00 16 19 C 0.54 8.43 7.57 -10.99 -0.08 8.35 16 20 O -0.55 -10.26 16.01 5.55 0.09 -10.17 16 21 C -0.15 -1.79 5.74 -91.77 -0.53 -2.32 16 22 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 23 C -0.16 -1.96 6.91 -89.08 -0.62 -2.57 16 24 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 25 C 0.07 0.78 7.44 37.93 0.28 1.06 16 26 O -0.37 -4.38 11.65 -35.23 -0.41 -4.79 16 27 C 0.07 0.71 7.44 37.94 0.28 0.99 16 28 C -0.16 -1.87 6.65 -89.07 -0.59 -2.47 16 29 H 0.13 1.66 7.82 -51.93 -0.41 1.25 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.62 7.53 -51.93 -0.39 0.23 16 33 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 34 H 0.01 0.25 6.65 -51.93 -0.35 -0.10 16 35 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.09 2.28 6.03 -51.93 -0.31 1.97 16 37 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.40 5.85 6.73 -40.82 -0.27 5.58 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -30.47 346.61 -9.08 -39.55 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.14 Total: 5.50 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.73 Total: -1.17 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.09 Total: -50.39 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.32 Total: -14.97 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.47 -9.08 -39.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942564812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.456 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds