Wall clock time and date at job start Tue Mar 31 2020 07:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52676 * 2 1 4 4 C 1.53195 * 109.49933 * 239.91176 * 2 1 3 5 5 N 1.46922 * 108.77658 * 185.41511 * 4 2 1 6 6 C 1.36940 * 120.63115 * 233.63222 * 5 4 2 7 7 H 1.07995 * 119.99861 * 27.66186 * 6 5 4 8 8 C 1.38813 * 119.99797 * 207.66273 * 6 5 4 9 9 N 1.31619 * 120.00153 * 17.36978 * 8 6 5 10 10 Si 1.86799 * 119.99979 * 197.37234 * 8 6 5 11 11 H 1.48505 * 109.47059 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47395 * 119.99619 * 10 8 6 13 13 H 1.48493 * 109.47139 * 240.00284 * 10 8 6 14 14 C 1.46932 * 118.73867 * 53.60941 * 5 4 2 15 15 C 1.53184 * 108.77491 * 306.39363 * 14 5 4 16 16 C 1.53042 * 109.31716 * 54.63285 * 15 14 5 17 17 H 1.08997 * 109.46165 * 178.61085 * 16 15 14 18 18 N 1.46502 * 109.45862 * 58.64109 * 16 15 14 19 19 C 1.34776 * 120.00377 * 84.97534 * 18 16 15 20 20 O 1.21287 * 119.99454 * 359.97438 * 19 18 16 21 21 C 1.50694 * 120.00350 * 179.97438 * 19 18 16 22 22 H 1.08995 * 115.50716 * 325.37094 * 21 19 18 23 23 C 1.53001 * 117.43601 * 110.65056 * 21 19 18 24 24 H 1.09011 * 119.80320 * 355.36570 * 23 21 19 25 25 C 1.54472 * 118.06749 * 198.08661 * 23 21 19 26 26 O 1.44427 * 104.80168 * 273.16935 * 25 23 21 27 27 C 1.44417 * 105.27517 * 40.51561 * 26 25 23 28 28 C 1.53003 * 117.43490 * 179.97438 * 21 19 18 29 29 H 1.09001 * 119.80412 * 5.65688 * 28 21 19 30 30 H 1.09000 * 109.46929 * 299.92851 * 1 2 3 31 31 H 1.09006 * 109.46623 * 59.91828 * 1 2 3 32 32 H 1.08996 * 109.47366 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58315 * 65.63059 * 4 2 1 34 34 H 1.08993 * 109.70114 * 305.27720 * 4 2 1 35 35 H 0.97001 * 119.99901 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.58427 * 186.59869 * 14 5 4 37 37 H 1.09006 * 109.58324 * 66.17951 * 14 5 4 38 38 H 1.09002 * 109.49652 * 294.67899 * 15 14 5 39 39 H 1.09004 * 109.52461 * 174.59868 * 15 14 5 40 40 H 0.97006 * 119.99864 * 264.97346 * 18 16 15 41 41 H 1.09007 * 110.37101 * 154.34286 * 25 23 21 42 42 H 1.08997 * 110.37423 * 32.00628 * 25 23 21 43 43 H 1.09004 * 110.37501 * 200.65233 * 27 26 25 44 44 H 1.09006 * 110.46742 * 78.36419 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7240 -1.2495 5 7 3.5046 -0.8293 -1.1694 6 6 4.2936 -0.3788 -2.1940 7 1 3.9466 0.4211 -2.8312 8 6 5.5395 -0.9502 -2.4134 9 7 5.8285 -2.1211 -1.8862 10 14 6.8058 -0.0576 -3.4570 11 1 6.2386 1.2312 -3.9290 12 1 8.0206 0.2051 -2.6443 13 1 7.1650 -0.8988 -4.6267 14 6 4.1052 -1.4268 0.0310 15 6 3.5708 -0.6950 1.2661 16 6 2.0407 -0.7230 1.2484 17 1 1.6581 -0.2244 2.1390 18 7 1.5782 -2.1130 1.2307 19 6 1.4492 -2.7952 2.3858 20 8 1.7165 -2.2584 3.4401 21 6 0.9729 -4.2248 2.3676 22 1 0.2374 -4.4647 1.5998 23 6 1.9866 -5.3103 2.7349 24 1 3.0260 -5.0401 2.9219 25 6 1.6737 -6.7660 2.3236 26 8 0.8767 -7.2924 3.4070 27 6 -0.0184 -6.2209 3.7763 28 6 0.8484 -4.9435 3.7125 29 1 1.0115 -4.3923 4.6386 30 1 -0.3633 0.5127 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7638 -0.1581 -2.1389 34 1 1.6053 -1.7216 -1.3004 35 1 6.6990 -2.5206 -2.0399 36 1 5.1895 -1.3248 -0.0136 37 1 3.8374 -2.4820 0.0870 38 1 3.9159 0.3388 1.2541 39 1 3.9332 -1.1892 2.1676 40 1 1.3647 -2.5424 0.3874 41 1 2.5961 -7.3373 2.2188 42 1 1.1074 -6.7839 1.3924 43 1 -0.3959 -6.3733 4.7875 44 1 -0.8454 -6.1543 3.0693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942564812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:28 Heat of formation + Delta-G solvation = -49.973629 kcal Electronic energy + Delta-G solvation = -24758.784784 eV Core-core repulsion = 21290.724415 eV Total energy + Delta-G solvation = -3468.060369 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84150 -40.66514 -39.01160 -36.03740 -35.54111 -33.95553 -32.89533 -31.77618 -29.68927 -27.71868 -27.39438 -26.52777 -24.07782 -23.21717 -22.69517 -21.70685 -21.23901 -20.10720 -18.88747 -18.57044 -17.17878 -16.88691 -16.81193 -16.22565 -16.11079 -16.01038 -15.68505 -15.40846 -15.16386 -14.76864 -14.59142 -14.26271 -13.97629 -13.57967 -13.52380 -13.16977 -12.98270 -12.84831 -12.71744 -12.57101 -12.54087 -12.38213 -12.16245 -11.96069 -11.68118 -11.48774 -11.44404 -11.33207 -11.13322 -10.86840 -10.65006 -10.54039 -10.00855 -8.67200 -7.87689 -5.32024 1.36619 1.45067 1.48464 1.57532 2.07135 2.50707 2.55783 3.03674 3.27773 3.42085 3.53510 3.65937 3.74204 3.81526 3.86893 4.05600 4.08716 4.11364 4.14460 4.39723 4.40255 4.58285 4.65565 4.68218 4.75820 4.77064 4.80702 4.82197 4.95883 4.98217 5.00148 5.06008 5.10030 5.18582 5.30907 5.42428 5.50566 5.57810 5.65108 5.71191 5.73266 6.38450 6.55749 7.14562 7.21760 7.86199 8.36888 9.18263 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.004264 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.688644 B = 6565.271418 C = 7499.641064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 H 0.076 0.924 4 C 0.149 3.851 5 N -0.607 5.607 6 C -0.260 4.260 7 H 0.068 0.932 8 C -0.048 4.048 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.295 1.295 13 H -0.292 1.292 14 C 0.189 3.811 15 C -0.143 4.143 16 C 0.167 3.833 17 H 0.075 0.925 18 N -0.698 5.698 19 C 0.540 3.460 20 O -0.583 6.583 21 C -0.144 4.144 22 H 0.151 0.849 23 C -0.174 4.174 24 H 0.109 0.891 25 C 0.077 3.923 26 O -0.390 6.390 27 C 0.076 3.924 28 C -0.159 4.159 29 H 0.120 0.880 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.248 0.752 36 H 0.045 0.955 37 H 0.003 0.997 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.408 0.592 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.150 -4.696 7.093 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 H 0.094 0.906 4 C 0.024 3.976 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.086 0.914 8 C -0.243 4.243 9 N -0.579 5.579 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.222 1.222 13 H -0.219 1.219 14 C 0.063 3.937 15 C -0.184 4.184 16 C 0.062 3.938 17 H 0.093 0.907 18 N -0.348 5.348 19 C 0.327 3.673 20 O -0.463 6.463 21 C -0.165 4.165 22 H 0.168 0.832 23 C -0.193 4.193 24 H 0.127 0.873 25 C 0.001 3.999 26 O -0.309 6.309 27 C 0.000 4.000 28 C -0.178 4.178 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.021 0.979 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.245 0.755 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.133 0.867 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.816 -4.599 7.874 16.554 hybrid contribution 1.405 0.532 -0.933 1.768 sum -12.411 -4.068 6.941 14.791 Atomic orbital electron populations 1.21692 0.92599 1.02406 1.02368 1.21798 0.96997 0.99613 0.94273 0.90598 1.21086 0.83371 0.97096 0.96043 1.44272 1.01120 1.71552 1.16099 1.19538 0.98812 1.12054 1.08639 0.91384 1.25709 1.01638 0.96044 1.00940 1.70178 1.21847 1.16047 1.49795 0.85305 0.79230 0.78561 0.77946 1.19013 1.22184 1.21916 1.20387 0.97025 0.92563 0.83722 1.22396 0.96634 1.00926 0.98402 1.20755 0.92769 0.81616 0.98615 0.90659 1.45958 1.66201 1.13711 1.08968 1.19924 0.76516 0.87472 0.83357 1.90655 1.52507 1.71021 1.32152 1.22393 1.03357 0.89341 1.01426 0.83163 1.24181 0.96233 0.94682 1.04178 0.87256 1.23021 0.96793 0.89635 0.90430 1.89169 1.51810 1.37020 1.52894 1.23095 0.91482 0.82139 1.03261 1.24192 0.99924 0.99661 0.93989 0.86237 0.92218 0.91328 0.92093 0.92320 0.95717 0.94275 0.93634 0.97860 0.92159 0.93684 0.75514 0.87369 0.89801 0.86657 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.05 71.98 0.65 -2.30 16 2 C -0.11 -3.18 2.67 -10.72 -0.03 -3.21 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.15 5.46 5.50 86.36 0.47 5.94 16 5 N -0.61 -28.75 2.99 -699.11 -2.09 -30.84 16 6 C -0.26 -13.80 9.59 84.03 0.81 -13.00 16 7 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 8 C -0.05 -2.61 4.91 84.86 0.42 -2.20 16 9 N -0.93 -54.21 11.19 21.65 0.24 -53.96 16 10 Si 0.96 44.24 29.59 68.60 2.03 46.27 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 C 0.19 8.95 5.05 86.36 0.44 9.39 16 15 C -0.14 -5.68 5.77 30.67 0.18 -5.51 16 16 C 0.17 5.45 2.21 45.02 0.10 5.55 16 17 H 0.08 2.49 7.58 -2.39 -0.02 2.47 16 18 N -0.70 -20.55 3.59 -442.40 -1.59 -22.14 16 19 C 0.54 16.29 7.57 87.66 0.66 16.95 16 20 O -0.58 -21.78 16.01 -3.05 -0.05 -21.83 16 21 C -0.14 -3.26 5.74 -11.54 -0.07 -3.33 16 22 H 0.15 2.48 8.14 -2.39 -0.02 2.46 16 23 C -0.17 -4.03 6.91 -9.80 -0.07 -4.10 16 24 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 25 C 0.08 1.49 7.44 72.48 0.54 2.03 16 26 O -0.39 -8.33 11.65 -148.98 -1.74 -10.07 16 27 C 0.08 1.28 7.44 72.49 0.54 1.82 16 28 C -0.16 -3.43 6.65 -9.79 -0.07 -3.49 16 29 H 0.12 2.93 7.82 -2.39 -0.02 2.91 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.06 1.25 7.53 -2.39 -0.02 1.23 16 33 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 34 H 0.03 0.87 6.65 -2.39 -0.02 0.85 16 35 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.05 2.52 6.03 -2.39 -0.01 2.51 16 37 H 0.00 0.17 7.74 -2.38 -0.02 0.15 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.41 11.11 6.73 -92.70 -0.62 10.48 16 41 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -66.58 346.61 1.75 -64.83 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.37 Total: 23.19 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 4.58 Total: 4.54 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -3.44 Total: -106.94 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.78 Total: -31.89 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -66.58 1.75 -64.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942564812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.860 kcal (2) G-P(sol) polarization free energy of solvation -66.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds