Wall clock time and date at job start Tue Mar 31 2020 07:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.52112 * 2 1 4 4 C 1.53195 * 109.49349 * 120.07367 * 2 1 3 5 5 N 1.46927 * 108.88619 * 174.66026 * 4 2 1 6 6 C 1.36944 * 120.63012 * 126.34710 * 5 4 2 7 7 H 1.07993 * 119.99465 * 332.61222 * 6 5 4 8 8 C 1.38812 * 120.00181 * 152.61368 * 6 5 4 9 9 N 1.31609 * 119.99991 * 159.35190 * 8 6 5 10 10 Si 1.86806 * 119.99889 * 339.35143 * 8 6 5 11 11 H 1.48501 * 109.46946 * 92.91197 * 10 8 6 12 12 H 1.48496 * 109.46962 * 212.91667 * 10 8 6 13 13 H 1.48503 * 109.47163 * 332.91431 * 10 8 6 14 14 C 1.46925 * 118.74124 * 306.31798 * 5 4 2 15 15 C 1.53189 * 108.77252 * 53.61172 * 14 5 4 16 16 C 1.53033 * 109.31642 * 305.36408 * 15 14 5 17 17 H 1.08999 * 109.46298 * 301.34667 * 16 15 14 18 18 N 1.46497 * 109.46317 * 181.37445 * 16 15 14 19 19 C 1.34771 * 120.00433 * 85.00331 * 18 16 15 20 20 O 1.21283 * 119.99762 * 359.97438 * 19 18 16 21 21 C 1.50700 * 120.00456 * 180.02562 * 19 18 16 22 22 H 1.09006 * 115.50581 * 34.62192 * 21 19 18 23 23 C 1.52999 * 117.43420 * 179.97438 * 21 19 18 24 24 H 1.08997 * 119.80965 * 354.34318 * 23 21 19 25 25 C 1.54480 * 118.06328 * 198.08331 * 23 21 19 26 26 O 1.44431 * 104.80442 * 321.12868 * 25 23 21 27 27 C 1.44427 * 105.27327 * 319.48829 * 26 25 23 28 28 C 1.53001 * 117.43246 * 249.34776 * 21 19 18 29 29 H 1.08997 * 119.80763 * 4.62779 * 28 21 19 30 30 H 1.09004 * 109.47348 * 299.92132 * 1 2 3 31 31 H 1.09000 * 109.47409 * 59.92566 * 1 2 3 32 32 H 1.09007 * 109.47355 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.58515 * 54.80322 * 4 2 1 34 34 H 1.08994 * 109.59073 * 294.51509 * 4 2 1 35 35 H 0.96999 * 120.00138 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.58918 * 173.39778 * 14 5 4 37 37 H 1.09004 * 109.58918 * 293.82772 * 14 5 4 38 38 H 1.09003 * 109.49728 * 65.31927 * 15 14 5 39 39 H 1.09005 * 109.49663 * 185.41328 * 15 14 5 40 40 H 0.97006 * 119.99763 * 265.00027 * 18 16 15 41 41 H 1.08994 * 110.37639 * 79.96339 * 25 23 21 42 42 H 1.08998 * 110.37164 * 202.29949 * 25 23 21 43 43 H 1.08997 * 110.36931 * 159.33890 * 27 26 25 44 44 H 1.08997 * 110.37386 * 281.56773 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7237 1.2497 5 7 3.5047 -0.8288 1.1732 6 6 4.2913 -0.3778 2.1994 7 1 3.9407 0.4192 2.8383 8 6 5.5391 -0.9451 2.4186 9 7 6.4507 -0.2862 3.1019 10 14 5.9244 -2.6438 1.7436 11 1 6.5620 -2.5131 0.4088 12 1 6.8506 -3.3454 2.6682 13 1 4.6667 -3.4232 1.6172 14 6 4.1083 -1.4277 -0.0251 15 6 3.5766 -0.6974 -1.2623 16 6 2.0466 -0.7257 -1.2482 17 1 1.7025 -1.7598 -1.2349 18 7 1.5350 -0.0567 -2.4469 19 6 1.4083 -0.7433 -3.5997 20 8 1.7183 -1.9149 -3.6448 21 6 0.8826 -0.0550 -4.8329 22 1 1.1649 0.9922 -4.9424 23 6 0.7634 -0.8898 -6.1095 24 1 1.1400 -1.9126 -6.1252 25 6 0.6444 -0.1441 -7.4571 26 8 -0.2054 0.9898 -7.1777 27 6 -1.2382 0.4849 -6.3034 28 6 -0.5038 -0.4661 -5.3327 29 1 -1.0994 -1.1743 -4.7568 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6052 -1.7214 1.2982 34 1 1.7615 -0.1591 2.1391 35 1 7.3228 -0.6824 3.2547 36 1 5.1924 -1.3254 0.0218 37 1 3.8408 -2.4829 -0.0806 38 1 3.9215 0.3365 -1.2507 39 1 3.9413 -1.1930 -2.1620 40 1 1.2873 0.8805 -2.4109 41 1 1.6256 0.1909 -7.7935 42 1 0.1844 -0.7872 -8.2074 43 1 -1.7031 1.3030 -5.7533 44 1 -1.9879 -0.0601 -6.8770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942564813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:32 Heat of formation + Delta-G solvation = -27.122500 kcal Electronic energy + Delta-G solvation = -24354.781776 eV Core-core repulsion = 20887.712306 eV Total energy + Delta-G solvation = -3467.069470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03298 -39.51745 -37.83002 -34.83001 -34.52302 -32.71467 -31.62488 -30.26256 -29.10324 -27.01078 -26.35571 -24.89216 -22.69164 -21.67199 -21.27162 -21.02037 -20.21124 -19.36095 -17.81138 -16.78311 -16.33607 -16.23852 -15.70288 -15.55645 -15.00459 -14.76820 -14.42548 -13.98520 -13.75852 -13.48689 -13.20195 -13.14380 -12.96866 -12.75814 -12.15668 -12.10981 -12.00927 -11.89343 -11.67559 -11.57267 -11.03148 -10.67637 -10.62898 -10.58414 -10.53630 -10.18060 -10.09071 -10.02084 -9.96938 -9.63901 -9.50291 -8.83960 -8.60749 -7.00449 -5.95916 -3.32156 2.34090 2.97826 3.32839 3.34318 3.50001 3.53589 3.62175 4.27282 4.29306 4.45744 4.50397 4.53290 4.84827 4.92343 4.97653 5.01891 5.05918 5.22325 5.25197 5.29464 5.31419 5.36640 5.42522 5.54204 5.68300 5.73422 5.82745 5.86574 6.00647 6.07364 6.10947 6.24877 6.31845 6.33989 6.40148 6.57353 6.63083 6.68319 6.72642 6.91135 7.57223 7.94374 8.25544 8.31402 8.92218 9.70945 10.08119 11.19898 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028402 B = 0.003522 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.611984 B = 7947.889017 C = 8454.174655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 H 0.076 0.924 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.908 5.908 10 Si 0.881 3.119 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.129 3.871 15 C -0.142 4.142 16 C 0.157 3.843 17 H 0.083 0.917 18 N -0.715 5.715 19 C 0.542 3.458 20 O -0.540 6.540 21 C -0.144 4.144 22 H 0.125 0.875 23 C -0.167 4.167 24 H 0.137 0.863 25 C 0.071 3.929 26 O -0.374 6.374 27 C 0.073 3.927 28 C -0.175 4.175 29 H 0.129 0.871 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.398 0.602 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.936 1.918 -18.155 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 H 0.095 0.905 4 C 0.031 3.969 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.551 5.551 10 Si 0.712 3.288 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.003 3.997 15 C -0.182 4.182 16 C 0.053 3.947 17 H 0.101 0.899 18 N -0.364 5.364 19 C 0.328 3.672 20 O -0.417 6.417 21 C -0.165 4.165 22 H 0.143 0.857 23 C -0.186 4.186 24 H 0.154 0.846 25 C -0.006 4.006 26 O -0.293 6.293 27 C -0.004 4.004 28 C -0.194 4.194 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.232 0.768 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.518 1.292 -18.147 23.912 hybrid contribution 0.313 -0.726 -0.207 0.817 sum -15.205 0.566 -18.354 23.840 Atomic orbital electron populations 1.21758 0.95402 1.01613 1.01170 1.22020 0.94840 1.00897 0.95936 0.90523 1.20917 0.84402 0.97026 0.94572 1.44400 1.00740 1.71780 1.16031 1.18909 0.97973 1.13991 1.08090 0.89622 1.25264 0.96413 0.98042 0.97728 1.69829 1.04511 1.37051 1.43682 0.86978 0.77805 0.86985 0.77073 1.21575 1.23096 1.19497 1.21318 0.98190 0.94698 0.85538 1.22403 0.94450 1.02013 0.99333 1.21097 0.94010 0.97065 0.82496 0.89940 1.46145 1.65670 1.14469 1.10116 1.19408 0.77777 0.86496 0.83530 1.90708 1.50116 1.16259 1.84646 1.22120 0.99781 1.01056 0.93513 0.85718 1.24018 1.02279 1.01716 0.90546 0.84563 1.23004 0.95623 0.87626 0.94328 1.89177 1.40764 1.31841 1.67491 1.22959 0.90473 0.97185 0.89783 1.24017 0.89798 1.03195 1.02358 0.85345 0.92452 0.93245 0.92926 0.95744 0.91386 0.92739 0.90691 0.95506 0.91548 0.92329 0.76762 0.88364 0.90780 0.88407 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.04 37.16 0.34 -1.37 16 2 C -0.12 -1.77 2.47 -90.34 -0.22 -1.99 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.16 3.00 5.79 -3.71 -0.02 2.98 16 5 N -0.61 -14.29 2.77 -172.32 -0.48 -14.77 16 6 C -0.26 -7.26 10.04 -15.06 -0.15 -7.41 16 7 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 8 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 9 N -0.91 -27.86 13.97 55.49 0.78 -27.08 16 10 Si 0.88 22.72 24.35 -169.99 -4.14 18.58 16 11 H -0.29 -7.23 6.62 56.52 0.37 -6.86 16 12 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 13 H -0.27 -6.88 6.64 56.52 0.38 -6.50 16 14 C 0.13 2.88 4.20 -3.71 -0.02 2.87 16 15 C -0.14 -2.64 5.65 -26.62 -0.15 -2.79 16 16 C 0.16 2.50 1.89 -67.73 -0.13 2.37 16 17 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 18 N -0.71 -9.19 4.38 -53.62 -0.23 -9.42 16 19 C 0.54 7.42 7.57 -10.99 -0.08 7.33 16 20 O -0.54 -9.51 16.01 5.56 0.09 -9.42 16 21 C -0.14 -1.48 5.55 -91.77 -0.51 -1.99 16 22 H 0.12 1.17 8.06 -51.93 -0.42 0.76 16 23 C -0.17 -1.59 6.69 -89.03 -0.60 -2.18 16 24 H 0.14 1.43 7.82 -51.93 -0.41 1.02 16 25 C 0.07 0.56 7.53 37.93 0.29 0.84 16 26 O -0.37 -3.51 11.31 -35.23 -0.40 -3.91 16 27 C 0.07 0.53 7.53 37.92 0.29 0.81 16 28 C -0.17 -1.51 6.95 -89.03 -0.62 -2.13 16 29 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.08 1.84 4.50 -51.93 -0.23 1.61 16 37 H 0.03 0.61 7.08 -51.93 -0.37 0.24 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.40 4.09 8.33 -40.82 -0.34 3.75 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -32.85 343.89 -8.10 -40.95 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.22 Total: 1.92 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.68 Total: -2.03 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.06 Total: -51.27 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.31 Total: -13.33 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.14 Total: 18.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.85 -8.10 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942564813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.827 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds