Wall clock time and date at job start Tue Mar 31 2020 07:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.52112 * 2 1 4 4 C 1.53195 * 109.49349 * 120.07367 * 2 1 3 5 5 N 1.46927 * 108.88619 * 174.66026 * 4 2 1 6 6 C 1.36944 * 120.63012 * 126.34710 * 5 4 2 7 7 H 1.07993 * 119.99465 * 332.61222 * 6 5 4 8 8 C 1.38812 * 120.00181 * 152.61368 * 6 5 4 9 9 N 1.31609 * 119.99991 * 159.35190 * 8 6 5 10 10 Si 1.86806 * 119.99889 * 339.35143 * 8 6 5 11 11 H 1.48501 * 109.46946 * 92.91197 * 10 8 6 12 12 H 1.48496 * 109.46962 * 212.91667 * 10 8 6 13 13 H 1.48503 * 109.47163 * 332.91431 * 10 8 6 14 14 C 1.46925 * 118.74124 * 306.31798 * 5 4 2 15 15 C 1.53189 * 108.77252 * 53.61172 * 14 5 4 16 16 C 1.53033 * 109.31642 * 305.36408 * 15 14 5 17 17 H 1.08999 * 109.46298 * 301.34667 * 16 15 14 18 18 N 1.46497 * 109.46317 * 181.37445 * 16 15 14 19 19 C 1.34771 * 120.00433 * 85.00331 * 18 16 15 20 20 O 1.21283 * 119.99762 * 359.97438 * 19 18 16 21 21 C 1.50700 * 120.00456 * 180.02562 * 19 18 16 22 22 H 1.09006 * 115.50581 * 34.62192 * 21 19 18 23 23 C 1.52999 * 117.43420 * 179.97438 * 21 19 18 24 24 H 1.08997 * 119.80965 * 354.34318 * 23 21 19 25 25 C 1.54480 * 118.06328 * 198.08331 * 23 21 19 26 26 O 1.44431 * 104.80442 * 321.12868 * 25 23 21 27 27 C 1.44427 * 105.27327 * 319.48829 * 26 25 23 28 28 C 1.53001 * 117.43246 * 249.34776 * 21 19 18 29 29 H 1.08997 * 119.80763 * 4.62779 * 28 21 19 30 30 H 1.09004 * 109.47348 * 299.92132 * 1 2 3 31 31 H 1.09000 * 109.47409 * 59.92566 * 1 2 3 32 32 H 1.09007 * 109.47355 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.58515 * 54.80322 * 4 2 1 34 34 H 1.08994 * 109.59073 * 294.51509 * 4 2 1 35 35 H 0.96999 * 120.00138 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.58918 * 173.39778 * 14 5 4 37 37 H 1.09004 * 109.58918 * 293.82772 * 14 5 4 38 38 H 1.09003 * 109.49728 * 65.31927 * 15 14 5 39 39 H 1.09005 * 109.49663 * 185.41328 * 15 14 5 40 40 H 0.97006 * 119.99763 * 265.00027 * 18 16 15 41 41 H 1.08994 * 110.37639 * 79.96339 * 25 23 21 42 42 H 1.08998 * 110.37164 * 202.29949 * 25 23 21 43 43 H 1.08997 * 110.36931 * 159.33890 * 27 26 25 44 44 H 1.08997 * 110.37386 * 281.56773 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7237 1.2497 5 7 3.5047 -0.8288 1.1732 6 6 4.2913 -0.3778 2.1994 7 1 3.9407 0.4192 2.8383 8 6 5.5391 -0.9451 2.4186 9 7 6.4507 -0.2862 3.1019 10 14 5.9244 -2.6438 1.7436 11 1 6.5620 -2.5131 0.4088 12 1 6.8506 -3.3454 2.6682 13 1 4.6667 -3.4232 1.6172 14 6 4.1083 -1.4277 -0.0251 15 6 3.5766 -0.6974 -1.2623 16 6 2.0466 -0.7257 -1.2482 17 1 1.7025 -1.7598 -1.2349 18 7 1.5350 -0.0567 -2.4469 19 6 1.4083 -0.7433 -3.5997 20 8 1.7183 -1.9149 -3.6448 21 6 0.8826 -0.0550 -4.8329 22 1 1.1649 0.9922 -4.9424 23 6 0.7634 -0.8898 -6.1095 24 1 1.1400 -1.9126 -6.1252 25 6 0.6444 -0.1441 -7.4571 26 8 -0.2054 0.9898 -7.1777 27 6 -1.2382 0.4849 -6.3034 28 6 -0.5038 -0.4661 -5.3327 29 1 -1.0994 -1.1743 -4.7568 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6052 -1.7214 1.2982 34 1 1.7615 -0.1591 2.1391 35 1 7.3228 -0.6824 3.2547 36 1 5.1924 -1.3254 0.0218 37 1 3.8408 -2.4829 -0.0806 38 1 3.9215 0.3365 -1.2507 39 1 3.9413 -1.1930 -2.1620 40 1 1.2873 0.8805 -2.4109 41 1 1.6256 0.1909 -7.7935 42 1 0.1844 -0.7872 -8.2074 43 1 -1.7031 1.3030 -5.7533 44 1 -1.9879 -0.0601 -6.8770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942564813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:31 Heat of formation + Delta-G solvation = -50.153094 kcal Electronic energy + Delta-G solvation = -24355.780458 eV Core-core repulsion = 20887.712306 eV Total energy + Delta-G solvation = -3468.068151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85380 -40.63345 -39.20714 -36.33549 -35.34172 -34.24083 -33.39595 -31.92140 -29.67287 -28.00163 -27.80314 -26.37425 -24.09162 -23.11231 -22.58479 -21.69489 -21.42944 -20.52763 -18.91321 -18.60657 -17.64923 -17.02827 -16.85826 -16.39009 -16.30799 -16.13221 -15.81319 -15.22002 -15.13779 -14.96390 -14.73711 -14.34416 -14.16628 -13.88291 -13.60097 -13.51334 -13.32812 -12.85538 -12.78015 -12.70698 -12.57002 -12.24718 -12.13809 -11.95688 -11.77147 -11.52366 -11.45994 -11.31538 -11.21940 -10.99125 -10.77279 -10.56731 -10.06265 -8.99305 -8.19834 -5.51345 1.26575 1.35572 1.37579 1.45800 1.98812 2.37912 2.53625 2.95780 3.00719 3.29785 3.54812 3.57739 3.64914 3.72453 3.85940 3.88639 4.07487 4.12029 4.19171 4.32533 4.37484 4.51496 4.55793 4.59433 4.69017 4.72222 4.77865 4.78728 4.83793 4.87421 4.88062 4.88369 4.99383 5.04209 5.10153 5.15727 5.29776 5.45326 5.51895 5.74593 5.83645 6.10409 6.53549 6.87121 7.20751 7.58150 7.99512 8.99814 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028402 B = 0.003522 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.611984 B = 7947.889017 C = 8454.174655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 H 0.077 0.923 4 C 0.150 3.850 5 N -0.619 5.619 6 C -0.246 4.246 7 H 0.061 0.939 8 C -0.030 4.030 9 N -0.953 5.953 10 Si 0.937 3.063 11 H -0.280 1.280 12 H -0.308 1.308 13 H -0.265 1.265 14 C 0.126 3.874 15 C -0.132 4.132 16 C 0.167 3.833 17 H 0.067 0.933 18 N -0.702 5.702 19 C 0.543 3.457 20 O -0.583 6.583 21 C -0.150 4.150 22 H 0.138 0.862 23 C -0.176 4.176 24 H 0.122 0.878 25 C 0.074 3.926 26 O -0.392 6.392 27 C 0.074 3.926 28 C -0.159 4.159 29 H 0.131 0.869 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.067 0.933 35 H 0.262 0.738 36 H 0.050 0.950 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.415 0.585 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.499 2.313 -20.328 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.095 0.905 4 C 0.025 3.975 5 N -0.343 5.343 6 C -0.375 4.375 7 H 0.079 0.921 8 C -0.225 4.225 9 N -0.600 5.600 10 Si 0.767 3.233 11 H -0.208 1.208 12 H -0.237 1.237 13 H -0.190 1.190 14 C 0.000 4.000 15 C -0.172 4.172 16 C 0.062 3.938 17 H 0.085 0.915 18 N -0.352 5.352 19 C 0.330 3.670 20 O -0.463 6.463 21 C -0.171 4.171 22 H 0.155 0.845 23 C -0.194 4.194 24 H 0.140 0.860 25 C -0.002 4.002 26 O -0.311 6.311 27 C -0.002 4.002 28 C -0.178 4.178 29 H 0.148 0.852 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.252 0.748 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.131 0.869 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.139 1.711 -20.356 27.318 hybrid contribution 1.042 -0.817 0.463 1.403 sum -17.097 0.894 -19.892 26.245 Atomic orbital electron populations 1.21701 0.92289 1.02168 1.02948 1.21830 0.97220 0.99891 0.93393 0.90494 1.21154 0.81682 0.97919 0.96739 1.44526 1.02466 1.71832 1.15484 1.18904 0.98023 1.12563 1.08022 0.92102 1.25812 0.96719 1.00935 0.99055 1.69937 1.05080 1.38513 1.46424 0.86055 0.77549 0.83072 0.76610 1.20762 1.23653 1.19010 1.21269 0.96932 0.95040 0.86733 1.22245 0.96597 1.01160 0.97210 1.20758 0.92028 0.96818 0.84159 0.91478 1.45904 1.65095 1.15141 1.09056 1.19947 0.76771 0.85984 0.84293 1.90694 1.51949 1.18297 1.85350 1.22006 1.01551 1.01296 0.92233 0.84459 1.24056 1.03036 1.01116 0.91233 0.85979 1.23078 0.96059 0.87447 0.93615 1.89164 1.41433 1.32609 1.67895 1.23136 0.90127 0.97580 0.89396 1.24107 0.89127 1.02964 1.01555 0.85151 0.91291 0.90910 0.92988 0.95105 0.91421 0.92917 0.93135 0.95686 0.91668 0.92416 0.74829 0.87905 0.89018 0.86915 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.04 71.98 0.65 -2.10 16 2 C -0.10 -2.91 2.47 -10.61 -0.03 -2.94 16 3 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.15 5.55 5.79 86.36 0.50 6.05 16 5 N -0.62 -29.10 2.77 -699.11 -1.94 -31.04 16 6 C -0.25 -13.86 10.04 84.03 0.84 -13.01 16 7 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 8 C -0.03 -1.78 5.23 84.86 0.44 -1.33 16 9 N -0.95 -60.15 13.97 21.65 0.30 -59.84 16 10 Si 0.94 47.93 24.35 68.60 1.67 49.60 16 11 H -0.28 -13.83 6.62 99.48 0.66 -13.18 16 12 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 13 H -0.27 -13.18 6.64 99.48 0.66 -12.52 16 14 C 0.13 5.62 4.20 86.36 0.36 5.98 16 15 C -0.13 -4.81 5.65 30.67 0.17 -4.64 16 16 C 0.17 5.06 1.89 45.12 0.09 5.14 16 17 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 18 N -0.70 -16.38 4.38 -441.94 -1.94 -18.32 16 19 C 0.54 13.88 7.57 87.66 0.66 14.54 16 20 O -0.58 -20.07 16.01 -3.04 -0.05 -20.11 16 21 C -0.15 -2.75 5.55 -11.54 -0.06 -2.82 16 22 H 0.14 2.18 8.06 -2.38 -0.02 2.17 16 23 C -0.18 -3.01 6.69 -9.76 -0.07 -3.07 16 24 H 0.12 2.47 7.82 -2.39 -0.02 2.45 16 25 C 0.07 0.99 7.53 72.49 0.55 1.53 16 26 O -0.39 -6.16 11.31 -148.98 -1.69 -7.85 16 27 C 0.07 0.80 7.53 72.48 0.55 1.35 16 28 C -0.16 -2.29 6.95 -9.77 -0.07 -2.35 16 29 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.07 1.20 7.39 -2.39 -0.02 1.18 16 32 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 2.48 7.93 -2.39 -0.02 2.47 16 35 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.05 2.49 4.50 -2.39 -0.01 2.48 16 37 H 0.03 1.13 7.08 -2.38 -0.02 1.11 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.41 7.15 8.33 -92.70 -0.77 6.38 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -72.37 343.89 1.08 -71.29 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.13 Total: 13.94 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 4.59 Total: 2.33 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -3.57 Total: -109.20 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.73 Total: -27.96 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.67 Total: 49.60 kcal Total: -72.37 1.08 -71.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942564813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.135 kcal (2) G-P(sol) polarization free energy of solvation -72.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds