Wall clock time and date at job start Tue Mar 31 2020 07:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49832 * 2 1 4 4 C 1.53187 * 109.49681 * 239.93125 * 2 1 3 5 5 N 1.46930 * 108.77430 * 185.41645 * 4 2 1 6 6 C 1.36935 * 120.62843 * 233.33367 * 5 4 2 7 7 H 1.08003 * 120.00045 * 152.66347 * 6 5 4 8 8 C 1.38810 * 120.00179 * 332.66208 * 6 5 4 9 9 N 1.31621 * 120.00185 * 159.35843 * 8 6 5 10 10 Si 1.86800 * 120.00001 * 339.35409 * 8 6 5 11 11 H 1.48503 * 109.47169 * 92.76675 * 10 8 6 12 12 H 1.48491 * 109.47537 * 212.76912 * 10 8 6 13 13 H 1.48507 * 109.47041 * 332.77061 * 10 8 6 14 14 C 1.46923 * 118.73996 * 53.60768 * 5 4 2 15 15 C 1.53194 * 108.77697 * 306.39137 * 14 5 4 16 16 C 1.53042 * 109.31098 * 54.63486 * 15 14 5 17 17 H 1.08995 * 109.44725 * 58.65085 * 16 15 14 18 18 N 1.46500 * 109.45879 * 178.61701 * 16 15 14 19 19 C 1.34777 * 120.00087 * 275.06702 * 18 16 15 20 20 O 1.21285 * 119.99593 * 359.97438 * 19 18 16 21 21 C 1.50695 * 120.00294 * 180.02562 * 19 18 16 22 22 H 1.08999 * 115.51221 * 34.62517 * 21 19 18 23 23 C 1.53000 * 117.43674 * 180.02562 * 21 19 18 24 24 H 1.09002 * 119.80324 * 354.34405 * 23 21 19 25 25 C 1.54474 * 118.06675 * 198.08309 * 23 21 19 26 26 O 1.44424 * 104.80556 * 321.12935 * 25 23 21 27 27 C 1.44418 * 105.27287 * 319.48663 * 26 25 23 28 28 C 1.53001 * 117.43213 * 249.34782 * 21 19 18 29 29 H 1.08997 * 119.80776 * 4.63865 * 28 21 19 30 30 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47143 * 300.07057 * 1 2 3 32 32 H 1.08999 * 109.47002 * 60.07116 * 1 2 3 33 33 H 1.08999 * 109.59108 * 65.62556 * 4 2 1 34 34 H 1.09005 * 109.70246 * 305.26661 * 4 2 1 35 35 H 0.97000 * 119.99596 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.59103 * 66.18096 * 14 5 4 37 37 H 1.09000 * 109.58913 * 186.61023 * 14 5 4 38 38 H 1.09003 * 109.49603 * 294.68913 * 15 14 5 39 39 H 1.08997 * 109.52941 * 174.60557 * 15 14 5 40 40 H 0.97005 * 120.00082 * 95.07622 * 18 16 15 41 41 H 1.09003 * 110.37401 * 79.96289 * 25 23 21 42 42 H 1.09002 * 110.36886 * 202.29387 * 25 23 21 43 43 H 1.08997 * 110.37177 * 159.34175 * 27 26 25 44 44 H 1.09001 * 110.38003 * 281.57324 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5046 -0.8289 -1.1697 6 6 4.2934 -0.3836 -2.1967 7 1 5.3007 -0.0487 -1.9978 8 6 3.7982 -0.3625 -3.4933 9 7 4.3569 0.4124 -4.3986 10 14 2.3390 -1.4342 -3.9533 11 1 1.0836 -0.6582 -3.7890 12 1 2.4705 -1.8693 -5.3670 13 1 2.3028 -2.6272 -3.0696 14 6 4.1053 -1.4267 0.0305 15 6 3.5709 -0.6953 1.2660 16 6 2.0408 -0.7234 1.2483 17 1 1.6969 -1.7576 1.2349 18 7 1.5265 -0.0534 2.4453 19 6 1.3984 -0.7389 3.5987 20 8 1.7085 -1.9106 3.6453 21 6 0.8689 -0.0500 4.8299 22 1 0.1078 0.7097 4.6520 23 6 0.7482 -0.8835 6.1072 24 1 0.9528 -1.9538 6.0771 25 6 -0.1632 -0.3547 7.2368 26 8 0.0536 1.0731 7.2479 27 6 1.4734 1.2439 7.0461 28 6 1.8496 0.1918 5.9791 29 1 2.9022 -0.0629 5.8558 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5127 -0.8906 33 1 1.7638 -0.1575 -2.1389 34 1 1.6054 -1.7213 -1.3008 35 1 4.0106 0.4273 -5.3046 36 1 3.8376 -2.4818 0.0863 37 1 5.1896 -1.3246 -0.0139 38 1 3.9159 0.3386 1.2542 39 1 3.9334 -1.1896 2.1672 40 1 1.2781 0.8835 2.4078 41 1 -1.2074 -0.5783 7.0179 42 1 0.1265 -0.7901 8.1932 43 1 1.6866 2.2484 6.6807 44 1 2.0140 1.0556 7.9737 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942564815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:37 Heat of formation + Delta-G solvation = -27.196106 kcal Electronic energy + Delta-G solvation = -24377.403426 eV Core-core repulsion = 20910.330764 eV Total energy + Delta-G solvation = -3467.072662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03642 -39.52858 -37.85049 -34.81717 -34.51168 -32.48426 -31.98474 -30.18500 -29.09696 -27.01677 -26.19385 -24.92702 -22.97765 -21.80615 -21.01531 -20.87067 -20.09006 -19.49085 -17.87922 -16.83231 -16.32928 -16.24420 -15.71666 -15.52313 -15.07112 -14.61912 -14.32669 -14.20037 -13.65073 -13.46355 -13.28956 -13.14366 -12.96395 -12.61689 -12.42249 -12.09747 -11.94176 -11.92714 -11.66390 -11.48416 -10.92989 -10.69236 -10.65450 -10.55718 -10.52770 -10.31957 -10.13500 -10.04480 -9.87657 -9.65806 -9.47891 -8.83378 -8.64600 -7.01222 -5.97244 -3.33283 2.34001 2.96807 3.29512 3.34362 3.47435 3.50542 3.62157 4.27685 4.29324 4.45971 4.50700 4.51084 4.85274 4.91616 4.98645 5.02329 5.07255 5.22501 5.27724 5.30125 5.32479 5.36785 5.43505 5.55542 5.67605 5.72471 5.85802 5.88239 6.01484 6.10244 6.10981 6.27853 6.32081 6.34012 6.37967 6.58959 6.61360 6.67749 6.72749 6.90522 7.57198 7.93647 8.24873 8.30793 8.91442 9.69526 10.07076 11.18708 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.003375 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.699605 B = 8294.340822 C = 8497.902962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 H 0.078 0.922 4 C 0.135 3.865 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.150 3.850 15 C -0.141 4.141 16 C 0.157 3.843 17 H 0.083 0.917 18 N -0.715 5.715 19 C 0.543 3.457 20 O -0.541 6.541 21 C -0.144 4.144 22 H 0.124 0.876 23 C -0.167 4.167 24 H 0.137 0.863 25 C 0.071 3.929 26 O -0.374 6.374 27 C 0.072 3.928 28 C -0.174 4.174 29 H 0.130 0.870 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.025 0.975 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.399 0.601 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.786 1.188 21.669 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.097 0.903 4 C 0.009 3.991 5 N -0.329 5.329 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.710 3.290 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.024 3.976 15 C -0.181 4.181 16 C 0.053 3.947 17 H 0.101 0.899 18 N -0.364 5.364 19 C 0.328 3.672 20 O -0.418 6.418 21 C -0.165 4.165 22 H 0.142 0.858 23 C -0.186 4.186 24 H 0.154 0.846 25 C -0.006 4.006 26 O -0.293 6.293 27 C -0.004 4.004 28 C -0.192 4.192 29 H 0.147 0.853 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.233 0.767 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.674 0.557 21.536 23.223 hybrid contribution -0.756 -0.257 -0.536 0.962 sum -9.430 0.300 21.000 23.022 Atomic orbital electron populations 1.21797 0.95566 1.01672 1.01267 1.21976 0.94869 1.01038 0.95700 0.90319 1.21372 0.84904 0.97241 0.95580 1.44411 1.00649 1.70145 1.17739 1.18929 0.98568 1.36248 0.85069 0.89609 1.25285 0.98000 0.98620 0.95629 1.69836 1.43214 1.37999 1.04026 0.86995 0.82600 0.82530 0.76843 1.21533 1.23078 1.19498 1.20899 0.97356 0.94142 0.85207 1.22389 0.94529 1.01800 0.99428 1.21039 0.94039 0.97103 0.82507 0.89897 1.46156 1.65628 1.14426 1.10176 1.19404 0.77688 0.86508 0.83566 1.90703 1.50169 1.16173 1.84755 1.22112 1.02755 1.02903 0.88773 0.85778 1.24000 1.00134 0.98899 0.95571 0.84571 1.23000 1.00295 0.81034 0.96240 1.89171 1.23591 1.22703 1.93837 1.22975 0.82087 0.99247 0.96115 1.24013 0.97302 0.99770 0.98163 0.85260 0.92918 0.93103 0.92439 0.90492 0.95512 0.92744 0.95730 0.91555 0.91784 0.92298 0.76735 0.88438 0.90787 0.88348 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.02 37.16 0.34 -1.71 16 2 C -0.11 -1.93 2.46 -90.50 -0.22 -2.15 16 3 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 4 C 0.14 2.89 3.49 -3.71 -0.01 2.88 16 5 N -0.61 -14.27 2.77 -172.32 -0.48 -14.75 16 6 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 7 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 8 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 9 N -0.91 -27.64 13.97 55.49 0.78 -26.86 16 10 Si 0.88 22.24 24.34 -169.99 -4.14 18.10 16 11 H -0.29 -6.94 6.62 56.52 0.37 -6.56 16 12 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 13 H -0.27 -6.76 6.64 56.52 0.38 -6.39 16 14 C 0.15 3.01 6.51 -3.71 -0.02 2.99 16 15 C -0.14 -2.40 5.65 -26.61 -0.15 -2.55 16 16 C 0.16 2.50 1.88 -67.89 -0.13 2.37 16 17 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 18 N -0.71 -9.17 4.37 -53.76 -0.23 -9.41 16 19 C 0.54 7.30 7.57 -10.99 -0.08 7.21 16 20 O -0.54 -9.29 16.01 5.55 0.09 -9.20 16 21 C -0.14 -1.47 5.56 -91.77 -0.51 -1.98 16 22 H 0.12 1.14 8.06 -51.93 -0.42 0.72 16 23 C -0.17 -1.56 6.68 -89.08 -0.60 -2.15 16 24 H 0.14 1.39 7.82 -51.93 -0.41 0.98 16 25 C 0.07 0.54 7.53 37.93 0.29 0.83 16 26 O -0.37 -3.49 11.31 -35.23 -0.40 -3.89 16 27 C 0.07 0.54 7.54 37.95 0.29 0.82 16 28 C -0.17 -1.53 6.95 -89.07 -0.62 -2.15 16 29 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.60 7.36 -51.93 -0.38 0.21 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.80 4.51 -51.93 -0.23 1.56 16 34 H 0.03 0.58 7.05 -51.93 -0.37 0.21 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.40 4.16 8.31 -40.82 -0.34 3.83 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -32.41 343.78 -8.10 -40.51 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.21 Total: 2.68 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.68 Total: -2.35 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.06 Total: -51.02 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.31 Total: -13.09 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.41 -8.10 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942564815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.309 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds