Wall clock time and date at job start Tue Mar 31 2020 07:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49832 * 2 1 4 4 C 1.53187 * 109.49681 * 239.93125 * 2 1 3 5 5 N 1.46930 * 108.77430 * 185.41645 * 4 2 1 6 6 C 1.36935 * 120.62843 * 233.33367 * 5 4 2 7 7 H 1.08003 * 120.00045 * 152.66347 * 6 5 4 8 8 C 1.38810 * 120.00179 * 332.66208 * 6 5 4 9 9 N 1.31621 * 120.00185 * 159.35843 * 8 6 5 10 10 Si 1.86800 * 120.00001 * 339.35409 * 8 6 5 11 11 H 1.48503 * 109.47169 * 92.76675 * 10 8 6 12 12 H 1.48491 * 109.47537 * 212.76912 * 10 8 6 13 13 H 1.48507 * 109.47041 * 332.77061 * 10 8 6 14 14 C 1.46923 * 118.73996 * 53.60768 * 5 4 2 15 15 C 1.53194 * 108.77697 * 306.39137 * 14 5 4 16 16 C 1.53042 * 109.31098 * 54.63486 * 15 14 5 17 17 H 1.08995 * 109.44725 * 58.65085 * 16 15 14 18 18 N 1.46500 * 109.45879 * 178.61701 * 16 15 14 19 19 C 1.34777 * 120.00087 * 275.06702 * 18 16 15 20 20 O 1.21285 * 119.99593 * 359.97438 * 19 18 16 21 21 C 1.50695 * 120.00294 * 180.02562 * 19 18 16 22 22 H 1.08999 * 115.51221 * 34.62517 * 21 19 18 23 23 C 1.53000 * 117.43674 * 180.02562 * 21 19 18 24 24 H 1.09002 * 119.80324 * 354.34405 * 23 21 19 25 25 C 1.54474 * 118.06675 * 198.08309 * 23 21 19 26 26 O 1.44424 * 104.80556 * 321.12935 * 25 23 21 27 27 C 1.44418 * 105.27287 * 319.48663 * 26 25 23 28 28 C 1.53001 * 117.43213 * 249.34782 * 21 19 18 29 29 H 1.08997 * 119.80776 * 4.63865 * 28 21 19 30 30 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47143 * 300.07057 * 1 2 3 32 32 H 1.08999 * 109.47002 * 60.07116 * 1 2 3 33 33 H 1.08999 * 109.59108 * 65.62556 * 4 2 1 34 34 H 1.09005 * 109.70246 * 305.26661 * 4 2 1 35 35 H 0.97000 * 119.99596 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.59103 * 66.18096 * 14 5 4 37 37 H 1.09000 * 109.58913 * 186.61023 * 14 5 4 38 38 H 1.09003 * 109.49603 * 294.68913 * 15 14 5 39 39 H 1.08997 * 109.52941 * 174.60557 * 15 14 5 40 40 H 0.97005 * 120.00082 * 95.07622 * 18 16 15 41 41 H 1.09003 * 110.37401 * 79.96289 * 25 23 21 42 42 H 1.09002 * 110.36886 * 202.29387 * 25 23 21 43 43 H 1.08997 * 110.37177 * 159.34175 * 27 26 25 44 44 H 1.09001 * 110.38003 * 281.57324 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5046 -0.8289 -1.1697 6 6 4.2934 -0.3836 -2.1967 7 1 5.3007 -0.0487 -1.9978 8 6 3.7982 -0.3625 -3.4933 9 7 4.3569 0.4124 -4.3986 10 14 2.3390 -1.4342 -3.9533 11 1 1.0836 -0.6582 -3.7890 12 1 2.4705 -1.8693 -5.3670 13 1 2.3028 -2.6272 -3.0696 14 6 4.1053 -1.4267 0.0305 15 6 3.5709 -0.6953 1.2660 16 6 2.0408 -0.7234 1.2483 17 1 1.6969 -1.7576 1.2349 18 7 1.5265 -0.0534 2.4453 19 6 1.3984 -0.7389 3.5987 20 8 1.7085 -1.9106 3.6453 21 6 0.8689 -0.0500 4.8299 22 1 0.1078 0.7097 4.6520 23 6 0.7482 -0.8835 6.1072 24 1 0.9528 -1.9538 6.0771 25 6 -0.1632 -0.3547 7.2368 26 8 0.0536 1.0731 7.2479 27 6 1.4734 1.2439 7.0461 28 6 1.8496 0.1918 5.9791 29 1 2.9022 -0.0629 5.8558 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5127 -0.8906 33 1 1.7638 -0.1575 -2.1389 34 1 1.6054 -1.7213 -1.3008 35 1 4.0106 0.4273 -5.3046 36 1 3.8376 -2.4818 0.0863 37 1 5.1896 -1.3246 -0.0139 38 1 3.9159 0.3386 1.2542 39 1 3.9334 -1.1896 2.1672 40 1 1.2781 0.8835 2.4078 41 1 -1.2074 -0.5783 7.0179 42 1 0.1265 -0.7901 8.1932 43 1 1.6866 2.2484 6.6807 44 1 2.0140 1.0556 7.9737 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942564815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:37 Heat of formation + Delta-G solvation = -49.702139 kcal Electronic energy + Delta-G solvation = -24378.379361 eV Core-core repulsion = 20910.330764 eV Total energy + Delta-G solvation = -3468.048597 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85107 -40.64581 -39.21975 -36.28917 -35.33479 -34.11906 -33.63075 -31.86334 -29.66626 -28.01650 -27.65417 -26.45610 -24.46991 -22.85228 -22.41040 -21.67972 -21.36699 -20.69429 -19.07637 -18.51595 -17.61822 -16.98776 -16.82379 -16.49666 -16.25170 -16.07029 -15.73429 -15.31412 -15.06752 -14.98478 -14.67509 -14.38351 -14.16983 -14.10727 -13.51261 -13.46290 -13.25351 -13.02121 -12.77024 -12.59981 -12.53571 -12.38786 -12.08445 -11.97704 -11.74692 -11.56673 -11.40233 -11.32918 -11.22566 -11.00196 -10.73161 -10.55084 -10.05790 -8.99158 -8.18610 -5.51134 1.27116 1.37116 1.40336 1.48673 1.98492 2.39033 2.55775 2.95832 3.02342 3.28782 3.54984 3.58902 3.63154 3.73260 3.86658 3.91665 4.01900 4.11034 4.24461 4.33368 4.41041 4.50392 4.51913 4.59700 4.67197 4.70196 4.75756 4.78526 4.83816 4.84709 4.88482 4.92873 4.98125 5.00872 5.04485 5.17989 5.26327 5.40633 5.49629 5.74754 5.84399 6.10723 6.54192 6.87823 7.21199 7.58497 7.99239 9.01177 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.003375 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.699605 B = 8294.340822 C = 8497.902962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.078 0.922 4 C 0.129 3.871 5 N -0.619 5.619 6 C -0.250 4.250 7 H 0.054 0.946 8 C -0.031 4.031 9 N -0.954 5.954 10 Si 0.941 3.059 11 H -0.268 1.268 12 H -0.310 1.310 13 H -0.267 1.267 14 C 0.146 3.854 15 C -0.128 4.128 16 C 0.167 3.833 17 H 0.067 0.933 18 N -0.703 5.703 19 C 0.544 3.456 20 O -0.581 6.581 21 C -0.149 4.149 22 H 0.140 0.860 23 C -0.171 4.171 24 H 0.124 0.876 25 C 0.074 3.926 26 O -0.391 6.391 27 C 0.074 3.926 28 C -0.165 4.165 29 H 0.127 0.873 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.027 0.973 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.414 0.586 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 1.605 24.105 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 H 0.097 0.903 4 C 0.004 3.996 5 N -0.343 5.343 6 C -0.379 4.379 7 H 0.072 0.928 8 C -0.226 4.226 9 N -0.600 5.600 10 Si 0.770 3.230 11 H -0.194 1.194 12 H -0.239 1.239 13 H -0.192 1.192 14 C 0.021 3.979 15 C -0.168 4.168 16 C 0.062 3.938 17 H 0.085 0.915 18 N -0.353 5.353 19 C 0.331 3.669 20 O -0.461 6.461 21 C -0.170 4.170 22 H 0.157 0.843 23 C -0.190 4.190 24 H 0.142 0.858 25 C -0.002 4.002 26 O -0.310 6.310 27 C -0.002 4.002 28 C -0.184 4.184 29 H 0.145 0.855 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.251 0.749 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.763 0.994 24.023 26.343 hybrid contribution -0.020 -0.402 -1.212 1.277 sum -10.783 0.593 22.811 25.238 Atomic orbital electron populations 1.21773 0.93022 1.02183 1.02836 1.21779 0.96879 1.00156 0.93678 0.90329 1.21421 0.83503 0.97481 0.97193 1.44520 1.01525 1.70657 1.17622 1.18868 0.97866 1.34835 0.86344 0.92780 1.25864 1.01244 0.99852 0.95634 1.69954 1.45659 1.39983 1.04436 0.86003 0.80420 0.80831 0.75778 1.19417 1.23904 1.19182 1.21015 0.97167 0.94520 0.85215 1.22207 0.95474 1.01273 0.97861 1.20683 0.93079 0.96481 0.83510 0.91502 1.45916 1.65197 1.15040 1.09139 1.19911 0.76693 0.86010 0.84255 1.90690 1.51929 1.18067 1.85392 1.22011 1.03815 1.03496 0.87639 0.84257 1.24040 1.01092 0.98406 0.95444 0.85809 1.23094 1.00475 0.80407 0.96229 1.89159 1.24553 1.23414 1.93901 1.23114 0.81473 0.99345 0.96272 1.24092 0.96923 1.00079 0.97322 0.85528 0.92947 0.90246 0.92225 0.92462 0.95446 0.92851 0.95459 0.92166 0.91742 0.91584 0.74930 0.87597 0.89093 0.87159 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.02 71.98 0.65 -2.88 16 2 C -0.10 -3.29 2.46 -10.71 -0.03 -3.31 16 3 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.13 5.39 3.49 86.36 0.30 5.69 16 5 N -0.62 -29.17 2.77 -699.10 -1.94 -31.11 16 6 C -0.25 -14.15 10.04 84.03 0.84 -13.31 16 7 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 8 C -0.03 -1.80 5.23 84.86 0.44 -1.36 16 9 N -0.95 -59.69 13.97 21.65 0.30 -59.39 16 10 Si 0.94 46.44 24.34 68.60 1.67 48.11 16 11 H -0.27 -12.24 6.62 99.48 0.66 -11.58 16 12 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 13 H -0.27 -12.88 6.64 99.48 0.66 -12.22 16 14 C 0.15 5.85 6.51 86.36 0.56 6.41 16 15 C -0.13 -4.21 5.65 30.67 0.17 -4.04 16 16 C 0.17 5.04 1.88 45.02 0.08 5.12 16 17 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 18 N -0.70 -16.27 4.37 -442.40 -1.93 -18.21 16 19 C 0.54 13.53 7.57 87.66 0.66 14.19 16 20 O -0.58 -19.30 16.01 -3.05 -0.05 -19.35 16 21 C -0.15 -2.66 5.56 -11.54 -0.06 -2.72 16 22 H 0.14 2.08 8.06 -2.39 -0.02 2.06 16 23 C -0.17 -2.82 6.68 -9.80 -0.07 -2.89 16 24 H 0.12 2.38 7.82 -2.39 -0.02 2.36 16 25 C 0.07 0.93 7.53 72.48 0.55 1.48 16 26 O -0.39 -6.09 11.31 -148.98 -1.69 -7.77 16 27 C 0.07 0.86 7.54 72.49 0.55 1.41 16 28 C -0.17 -2.49 6.95 -9.79 -0.07 -2.56 16 29 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.55 7.36 -2.39 -0.02 1.53 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 2.61 4.51 -2.39 -0.01 2.60 16 34 H 0.03 1.15 7.05 -2.38 -0.02 1.13 16 35 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.41 7.26 8.31 -92.70 -0.77 6.49 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -71.05 343.78 1.09 -69.97 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.13 Total: 16.52 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 4.59 Total: 1.23 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -3.57 Total: -108.70 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -1.73 Total: -27.12 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.67 Total: 48.11 kcal Total: -71.05 1.09 -69.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942564815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.264 kcal (2) G-P(sol) polarization free energy of solvation -71.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds