Wall clock time and date at job start Tue Mar 31 2020 06:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.58213 * 2 1 4 4 C 1.53172 * 109.58647 * 239.56823 * 2 1 3 5 5 C 1.53036 * 109.32199 * 185.57065 * 4 2 1 6 6 H 1.09011 * 109.45374 * 181.38782 * 5 4 2 7 7 N 1.46503 * 109.46057 * 301.35439 * 5 4 2 8 8 C 1.34776 * 119.99927 * 205.02765 * 7 5 4 9 9 O 1.21735 * 120.00138 * 0.02562 * 8 7 5 10 10 C 1.41793 * 119.99655 * 180.02562 * 8 7 5 11 11 C 1.33461 * 118.78562 * 180.02562 * 10 8 7 12 12 O 1.34343 * 123.08003 * 180.41358 * 11 10 8 13 13 C 1.45357 * 117.48511 * 343.68027 * 12 11 10 14 14 C 1.53434 * 108.26643 * 47.45280 * 13 12 11 15 15 C 1.50416 * 118.78932 * 0.02562 * 10 8 7 16 16 C 1.53039 * 109.53095 * 61.37561 * 5 4 2 17 17 C 1.53191 * 109.31112 * 298.63799 * 16 5 4 18 18 N 1.46926 * 109.58508 * 120.28992 * 2 1 3 19 19 C 1.36932 * 120.63406 * 353.37110 * 18 2 1 20 20 H 1.08002 * 120.00176 * 29.03936 * 19 18 2 21 21 C 1.38817 * 119.99854 * 209.04533 * 19 18 2 22 22 N 1.31608 * 120.00178 * 15.00955 * 21 19 18 23 23 Si 1.86799 * 119.99493 * 195.01356 * 21 19 18 24 24 H 1.48499 * 109.47302 * 90.00040 * 23 21 19 25 25 H 1.48509 * 109.46853 * 209.99723 * 23 21 19 26 26 H 1.48505 * 109.47556 * 329.99327 * 23 21 19 27 27 H 1.09001 * 109.46943 * 299.71058 * 1 2 3 28 28 H 1.08997 * 109.47461 * 59.71672 * 1 2 3 29 29 H 1.09007 * 109.47069 * 179.71593 * 1 2 3 30 30 H 1.09001 * 109.47457 * 65.62097 * 4 2 1 31 31 H 1.08999 * 109.50068 * 305.53596 * 4 2 1 32 32 H 0.97000 * 119.99724 * 25.03394 * 7 5 4 33 33 H 1.08006 * 118.46168 * 0.44335 * 11 10 8 34 34 H 1.08996 * 109.70785 * 167.16587 * 13 12 11 35 35 H 1.09001 * 109.70343 * 287.74417 * 13 12 11 36 36 H 1.09000 * 109.68062 * 177.61002 * 14 13 12 37 37 H 1.09000 * 109.70673 * 57.01305 * 14 13 12 38 38 H 1.09004 * 109.45297 * 282.35407 * 15 10 8 39 39 H 1.09000 * 109.45483 * 42.31277 * 15 10 8 40 40 H 1.08994 * 109.49526 * 58.58825 * 16 5 4 41 41 H 1.08999 * 109.49688 * 178.69018 * 16 5 4 42 42 H 1.08999 * 109.58752 * 174.42206 * 17 16 5 43 43 H 1.09002 * 109.58634 * 294.70976 * 17 16 5 44 44 H 0.97000 * 120.00174 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2443 5 6 3.5674 -0.8494 -1.1692 6 1 3.9375 -1.3475 -2.0654 7 7 4.1570 0.4885 -1.0757 8 6 5.4208 0.6988 -1.4940 9 8 6.0723 -0.2230 -1.9500 10 6 5.9915 1.9936 -1.4030 11 6 7.2447 2.1746 -1.8248 12 8 7.8722 3.3613 -1.7712 13 6 7.0522 4.5456 -1.5768 14 6 6.0766 4.2712 -0.4247 15 6 5.1622 3.1124 -0.8347 16 6 3.9569 -1.6657 0.0654 17 6 3.4651 -0.9454 1.3248 18 7 2.0225 -0.6982 1.1953 19 6 1.1538 -1.1102 2.1703 20 1 0.1360 -1.3650 1.9141 21 6 1.5813 -1.2002 3.4879 22 7 2.7045 -0.6216 3.8563 23 14 0.5622 -2.1426 4.7380 24 1 0.9962 -3.5626 4.7610 25 1 0.7532 -1.5448 6.0840 26 1 -0.8729 -2.0695 4.3631 27 1 -0.3633 0.5093 0.8926 28 1 -0.3634 0.5182 -0.8874 29 1 -0.3633 -1.0277 -0.0051 30 1 1.7657 -0.1693 -2.1362 31 1 1.6029 -1.7269 -1.2890 32 1 3.6377 1.2230 -0.7126 33 1 7.7793 1.3275 -2.2286 34 1 7.6872 5.3953 -1.3264 35 1 6.4940 4.7598 -2.4882 36 1 5.4778 5.1612 -0.2309 37 1 6.6337 4.0000 0.4720 38 1 4.4539 3.4579 -1.5877 39 1 4.6175 2.7532 0.0385 40 1 3.4983 -2.6528 0.0083 41 1 5.0412 -1.7694 0.1057 42 1 3.6519 -1.5692 2.1989 43 1 3.9921 0.0026 1.4329 44 1 3.0034 -0.6848 4.7770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947113129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:33 Heat of formation + Delta-G solvation = -44.814968 kcal Electronic energy + Delta-G solvation = -25014.178759 eV Core-core repulsion = 21546.342086 eV Total energy + Delta-G solvation = -3467.836673 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60280 -39.27398 -37.57901 -34.45123 -34.05749 -32.30316 -31.76884 -30.89783 -29.50097 -26.39307 -25.84834 -25.08078 -24.18680 -22.05480 -21.47815 -20.57468 -19.06184 -18.45615 -17.87860 -16.52784 -16.08026 -15.80946 -15.37873 -15.08756 -14.64129 -14.62455 -14.06571 -13.91109 -13.70401 -13.48925 -13.24726 -13.11115 -12.82544 -12.57875 -12.34049 -11.80301 -11.43365 -11.38577 -11.18057 -11.07865 -10.98977 -10.77904 -10.68465 -10.59189 -10.37691 -10.11884 -10.05434 -9.64410 -9.49490 -9.26516 -8.64586 -8.45439 -8.33199 -6.62787 -5.76698 -3.20971 1.50150 3.09925 3.37752 3.44832 3.45412 3.65111 3.82785 4.49037 4.51261 4.57396 4.75446 5.02069 5.11144 5.25817 5.31304 5.36170 5.38743 5.47955 5.53718 5.67215 5.72091 5.76498 5.92734 6.04168 6.05433 6.12482 6.21659 6.28925 6.32376 6.42111 6.46473 6.61279 6.69138 6.83713 6.98133 7.05340 7.09707 7.18757 7.42227 7.72460 7.82782 8.01133 8.47170 8.67833 9.23037 9.86651 10.43302 11.31191 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019822 B = 0.004324 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.256847 B = 6474.524239 C = 6845.550801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.018 0.982 4 C -0.138 4.138 5 C 0.154 3.846 6 H 0.071 0.929 7 N -0.710 5.710 8 C 0.569 3.431 9 O -0.570 6.570 10 C -0.306 4.306 11 C 0.148 3.852 12 O -0.314 6.314 13 C 0.053 3.947 14 C -0.156 4.156 15 C -0.076 4.076 16 C -0.153 4.153 17 C 0.176 3.824 18 N -0.586 5.586 19 C -0.250 4.250 20 H 0.070 0.930 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.399 0.601 33 H 0.179 0.821 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.017 0.983 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 9.576 -11.201 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.062 3.938 3 H 0.036 0.964 4 C -0.178 4.178 5 C 0.050 3.950 6 H 0.089 0.911 7 N -0.362 5.362 8 C 0.360 3.640 9 O -0.453 6.453 10 C -0.310 4.310 11 C 0.080 3.920 12 O -0.225 6.225 13 C -0.021 4.021 14 C -0.194 4.194 15 C -0.114 4.114 16 C -0.193 4.193 17 C 0.050 3.950 18 N -0.310 5.310 19 C -0.380 4.380 20 H 0.087 0.913 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.205 1.205 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.236 0.764 33 H 0.196 0.804 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.374 9.003 -11.346 15.449 hybrid contribution -0.992 -0.127 1.062 1.459 sum 4.382 8.876 -10.284 14.274 Atomic orbital electron populations 1.21810 0.95913 1.01500 1.00229 1.20368 0.93084 0.93048 0.87327 0.96435 1.22354 0.94190 1.02209 0.99067 1.20842 0.92820 0.82689 0.98666 0.91072 1.46060 1.14163 1.12382 1.63568 1.16543 0.81880 0.87928 0.77684 1.90760 1.61252 1.45129 1.48177 1.20121 0.98581 0.97080 1.15260 1.22916 0.92329 0.87349 0.89374 1.86251 1.36922 1.14018 1.85309 1.23521 0.93959 0.85774 0.98814 1.22169 0.98619 0.99762 0.98838 1.20292 0.97067 0.92928 1.01080 1.22546 0.99902 0.99341 0.97544 1.20709 0.83006 0.97103 0.94149 1.44133 1.03023 1.65057 1.18781 1.19189 0.94818 1.37732 0.86221 0.91263 1.25069 0.97800 0.99745 0.96953 1.70011 1.23329 1.44591 1.16833 0.86326 0.79824 0.79849 0.80953 1.21519 1.21867 1.20492 0.91960 0.94355 0.92693 0.92734 0.90748 0.76404 0.80443 0.87566 0.91020 0.89556 0.90174 0.90867 0.89687 0.91975 0.92816 0.89616 0.96482 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.94 37.16 0.30 -2.16 16 2 C 0.17 3.28 3.19 -67.61 -0.22 3.07 16 3 H 0.02 0.35 6.65 -51.93 -0.35 0.01 16 4 C -0.14 -2.35 5.07 -26.62 -0.13 -2.48 16 5 C 0.15 2.77 2.78 -67.89 -0.19 2.58 16 6 H 0.07 1.30 7.58 -51.92 -0.39 0.90 16 7 N -0.71 -11.95 4.18 -56.61 -0.24 -12.19 16 8 C 0.57 9.75 7.49 -14.90 -0.11 9.63 16 9 O -0.57 -11.37 15.58 5.16 0.08 -11.29 16 10 C -0.31 -4.27 5.70 -105.07 -0.60 -4.86 16 11 C 0.15 1.90 10.46 29.06 0.30 2.20 16 12 O -0.31 -3.57 10.47 -14.87 -0.16 -3.72 16 13 C 0.05 0.44 7.15 37.38 0.27 0.71 16 14 C -0.16 -1.44 6.23 -26.41 -0.16 -1.60 16 15 C -0.08 -0.88 5.08 -27.92 -0.14 -1.02 16 16 C -0.15 -3.13 5.77 -26.61 -0.15 -3.29 16 17 C 0.18 4.18 5.03 -3.71 -0.02 4.17 16 18 N -0.59 -13.94 2.99 -164.78 -0.49 -14.43 16 19 C -0.25 -6.55 8.60 -15.06 -0.13 -6.68 16 20 H 0.07 1.77 6.21 -52.49 -0.33 1.45 16 21 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 22 N -0.90 -25.82 11.14 55.49 0.62 -25.20 16 23 Si 0.90 21.47 29.58 -169.99 -5.03 16.44 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H 0.06 1.21 7.62 -51.93 -0.40 0.81 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.00 7.45 -51.92 -0.39 0.62 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.40 6.38 4.98 -40.82 -0.20 6.18 16 33 H 0.18 2.26 7.21 -52.48 -0.38 1.89 16 34 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.10 7.15 -51.93 -0.37 0.73 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 43 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -30.78 339.10 -8.06 -38.84 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.88 Total: 6.19 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.08 Total: 0.25 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.11 Total: -51.82 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.08 Total: -15.02 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.78 -8.06 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947113129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.972 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds