Wall clock time and date at job start Tue Mar 31 2020 06:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.58213 * 2 1 4 4 C 1.53172 * 109.58647 * 239.56823 * 2 1 3 5 5 C 1.53036 * 109.32199 * 185.57065 * 4 2 1 6 6 H 1.09011 * 109.45374 * 181.38782 * 5 4 2 7 7 N 1.46503 * 109.46057 * 301.35439 * 5 4 2 8 8 C 1.34776 * 119.99927 * 205.02765 * 7 5 4 9 9 O 1.21735 * 120.00138 * 0.02562 * 8 7 5 10 10 C 1.41793 * 119.99655 * 180.02562 * 8 7 5 11 11 C 1.33461 * 118.78562 * 180.02562 * 10 8 7 12 12 O 1.34343 * 123.08003 * 180.41358 * 11 10 8 13 13 C 1.45357 * 117.48511 * 343.68027 * 12 11 10 14 14 C 1.53434 * 108.26643 * 47.45280 * 13 12 11 15 15 C 1.50416 * 118.78932 * 0.02562 * 10 8 7 16 16 C 1.53039 * 109.53095 * 61.37561 * 5 4 2 17 17 C 1.53191 * 109.31112 * 298.63799 * 16 5 4 18 18 N 1.46926 * 109.58508 * 120.28992 * 2 1 3 19 19 C 1.36932 * 120.63406 * 353.37110 * 18 2 1 20 20 H 1.08002 * 120.00176 * 29.03936 * 19 18 2 21 21 C 1.38817 * 119.99854 * 209.04533 * 19 18 2 22 22 N 1.31608 * 120.00178 * 15.00955 * 21 19 18 23 23 Si 1.86799 * 119.99493 * 195.01356 * 21 19 18 24 24 H 1.48499 * 109.47302 * 90.00040 * 23 21 19 25 25 H 1.48509 * 109.46853 * 209.99723 * 23 21 19 26 26 H 1.48505 * 109.47556 * 329.99327 * 23 21 19 27 27 H 1.09001 * 109.46943 * 299.71058 * 1 2 3 28 28 H 1.08997 * 109.47461 * 59.71672 * 1 2 3 29 29 H 1.09007 * 109.47069 * 179.71593 * 1 2 3 30 30 H 1.09001 * 109.47457 * 65.62097 * 4 2 1 31 31 H 1.08999 * 109.50068 * 305.53596 * 4 2 1 32 32 H 0.97000 * 119.99724 * 25.03394 * 7 5 4 33 33 H 1.08006 * 118.46168 * 0.44335 * 11 10 8 34 34 H 1.08996 * 109.70785 * 167.16587 * 13 12 11 35 35 H 1.09001 * 109.70343 * 287.74417 * 13 12 11 36 36 H 1.09000 * 109.68062 * 177.61002 * 14 13 12 37 37 H 1.09000 * 109.70673 * 57.01305 * 14 13 12 38 38 H 1.09004 * 109.45297 * 282.35407 * 15 10 8 39 39 H 1.09000 * 109.45483 * 42.31277 * 15 10 8 40 40 H 1.08994 * 109.49526 * 58.58825 * 16 5 4 41 41 H 1.08999 * 109.49688 * 178.69018 * 16 5 4 42 42 H 1.08999 * 109.58752 * 174.42206 * 17 16 5 43 43 H 1.09002 * 109.58634 * 294.70976 * 17 16 5 44 44 H 0.97000 * 120.00174 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2443 5 6 3.5674 -0.8494 -1.1692 6 1 3.9375 -1.3475 -2.0654 7 7 4.1570 0.4885 -1.0757 8 6 5.4208 0.6988 -1.4940 9 8 6.0723 -0.2230 -1.9500 10 6 5.9915 1.9936 -1.4030 11 6 7.2447 2.1746 -1.8248 12 8 7.8722 3.3613 -1.7712 13 6 7.0522 4.5456 -1.5768 14 6 6.0766 4.2712 -0.4247 15 6 5.1622 3.1124 -0.8347 16 6 3.9569 -1.6657 0.0654 17 6 3.4651 -0.9454 1.3248 18 7 2.0225 -0.6982 1.1953 19 6 1.1538 -1.1102 2.1703 20 1 0.1360 -1.3650 1.9141 21 6 1.5813 -1.2002 3.4879 22 7 2.7045 -0.6216 3.8563 23 14 0.5622 -2.1426 4.7380 24 1 0.9962 -3.5626 4.7610 25 1 0.7532 -1.5448 6.0840 26 1 -0.8729 -2.0695 4.3631 27 1 -0.3633 0.5093 0.8926 28 1 -0.3634 0.5182 -0.8874 29 1 -0.3633 -1.0277 -0.0051 30 1 1.7657 -0.1693 -2.1362 31 1 1.6029 -1.7269 -1.2890 32 1 3.6377 1.2230 -0.7126 33 1 7.7793 1.3275 -2.2286 34 1 7.6872 5.3953 -1.3264 35 1 6.4940 4.7598 -2.4882 36 1 5.4778 5.1612 -0.2309 37 1 6.6337 4.0000 0.4720 38 1 4.4539 3.4579 -1.5877 39 1 4.6175 2.7532 0.0385 40 1 3.4983 -2.6528 0.0083 41 1 5.0412 -1.7694 0.1057 42 1 3.6519 -1.5692 2.1989 43 1 3.9921 0.0026 1.4329 44 1 3.0034 -0.6848 4.7770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947113129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:32 Heat of formation + Delta-G solvation = -64.093509 kcal Electronic energy + Delta-G solvation = -25015.014739 eV Core-core repulsion = 21546.342086 eV Total energy + Delta-G solvation = -3468.672653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.73110 -40.50182 -39.11171 -35.92123 -35.22632 -34.03316 -32.90985 -32.37576 -31.17370 -28.00533 -26.85711 -26.69248 -25.32814 -23.73372 -22.70056 -22.17492 -20.34800 -19.83016 -18.91968 -18.23915 -17.28891 -17.11838 -16.81161 -16.46639 -15.94236 -15.89681 -15.64011 -15.47751 -14.95895 -14.84002 -14.53263 -14.36530 -14.15957 -13.96363 -13.57654 -13.34270 -13.15241 -12.85813 -12.65960 -12.48203 -12.33149 -12.23872 -12.14918 -11.95707 -11.79963 -11.70540 -11.62329 -11.40004 -10.98307 -10.84238 -10.50226 -10.01254 -9.45487 -8.59238 -7.81326 -5.26991 0.40415 1.46908 1.49386 1.56467 2.21148 2.36566 2.52988 2.58119 3.33939 3.62679 3.72842 3.76003 3.94655 3.95282 4.10812 4.20027 4.22741 4.30095 4.40442 4.45098 4.57955 4.61914 4.68147 4.73834 4.79482 4.92443 4.94793 4.98965 5.06566 5.11758 5.12138 5.17226 5.19469 5.25345 5.41559 5.54375 5.56897 5.67092 5.74233 5.78015 6.22299 6.45107 6.68830 7.20089 7.34458 7.92670 8.44290 9.24721 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019822 B = 0.004324 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.256847 B = 6474.524239 C = 6845.550801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.161 3.839 3 H 0.022 0.978 4 C -0.125 4.125 5 C 0.159 3.841 6 H 0.075 0.925 7 N -0.707 5.707 8 C 0.565 3.435 9 O -0.605 6.605 10 C -0.327 4.327 11 C 0.168 3.832 12 O -0.319 6.319 13 C 0.049 3.951 14 C -0.153 4.153 15 C -0.074 4.074 16 C -0.142 4.142 17 C 0.190 3.810 18 N -0.600 5.600 19 C -0.247 4.247 20 H 0.077 0.923 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.959 3.041 24 H -0.292 1.292 25 H -0.300 1.300 26 H -0.265 1.265 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.404 0.596 33 H 0.174 0.826 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.046 0.954 43 H -0.003 1.003 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 11.081 -13.022 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 H 0.040 0.960 4 C -0.164 4.164 5 C 0.054 3.946 6 H 0.093 0.907 7 N -0.359 5.359 8 C 0.358 3.642 9 O -0.491 6.491 10 C -0.332 4.332 11 C 0.099 3.901 12 O -0.229 6.229 13 C -0.024 4.024 14 C -0.191 4.191 15 C -0.111 4.111 16 C -0.182 4.182 17 C 0.064 3.936 18 N -0.324 5.324 19 C -0.377 4.377 20 H 0.095 0.905 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.788 3.212 24 H -0.219 1.219 25 H -0.227 1.227 26 H -0.190 1.190 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.242 0.758 33 H 0.191 0.809 34 H 0.153 0.847 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.015 0.985 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.372 10.537 -13.193 17.441 hybrid contribution -0.630 -0.525 1.575 1.776 sum 3.742 10.012 -11.618 15.787 Atomic orbital electron populations 1.21743 0.94375 1.01471 1.01165 1.20641 0.94404 0.93061 0.86393 0.96019 1.22229 0.92786 1.02446 0.98930 1.20733 0.93866 0.82958 0.97050 0.90710 1.45998 1.14332 1.11985 1.63550 1.17012 0.81608 0.88779 0.76828 1.90734 1.61944 1.46489 1.49918 1.20087 0.99413 0.96442 1.17270 1.22878 0.91600 0.88022 0.87619 1.86251 1.37750 1.14304 1.84596 1.23873 0.94269 0.85017 0.99220 1.22177 0.98593 0.99735 0.98551 1.20292 0.97359 0.92957 1.00510 1.22374 0.98967 0.99437 0.97409 1.20357 0.83568 0.95557 0.94124 1.44342 1.02540 1.65812 1.19720 1.19533 0.95245 1.36249 0.86664 0.90534 1.25762 0.98999 1.01205 0.98845 1.70170 1.25132 1.46564 1.16571 0.85386 0.79196 0.78133 0.78475 1.21907 1.22665 1.18999 0.93976 0.90445 0.93191 0.89303 0.90651 0.75848 0.80930 0.84674 0.89263 0.86974 0.91657 0.89190 0.91810 0.92039 0.93971 0.93588 0.98528 0.94586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 7.94 71.98 0.57 -3.76 16 2 C 0.16 5.98 3.19 44.97 0.14 6.13 16 3 H 0.02 0.82 6.65 -2.39 -0.02 0.80 16 4 C -0.12 -3.91 5.07 30.66 0.16 -3.75 16 5 C 0.16 5.56 2.78 45.02 0.13 5.69 16 6 H 0.07 2.63 7.58 -2.38 -0.02 2.61 16 7 N -0.71 -23.44 4.18 -451.21 -1.89 -25.33 16 8 C 0.56 19.31 7.49 85.12 0.64 19.95 16 9 O -0.61 -24.36 15.58 -4.46 -0.07 -24.43 16 10 C -0.33 -8.93 5.70 -20.16 -0.11 -9.04 16 11 C 0.17 4.15 10.46 66.74 0.70 4.85 16 12 O -0.32 -6.60 10.47 -76.12 -0.80 -7.40 16 13 C 0.05 0.66 7.15 72.13 0.52 1.18 16 14 C -0.15 -2.47 6.23 30.81 0.19 -2.28 16 15 C -0.07 -1.60 5.08 29.82 0.15 -1.45 16 16 C -0.14 -5.89 5.77 30.67 0.18 -5.72 16 17 C 0.19 9.34 5.03 86.36 0.43 9.77 16 18 N -0.60 -28.62 2.99 -675.25 -2.02 -30.64 16 19 C -0.25 -12.95 8.60 84.04 0.72 -12.23 16 20 H 0.08 3.86 6.21 -2.91 -0.02 3.84 16 21 C -0.05 -2.94 4.96 84.87 0.42 -2.52 16 22 N -0.94 -55.47 11.14 21.65 0.24 -55.23 16 23 Si 0.96 44.78 29.58 68.60 2.03 46.81 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H 0.04 1.56 7.62 -2.39 -0.02 1.54 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.70 7.45 -2.38 -0.02 1.68 16 30 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.40 12.62 4.98 -92.71 -0.46 12.15 16 33 H 0.17 4.38 7.21 -2.91 -0.02 4.36 16 34 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.06 1.64 7.15 -2.39 -0.02 1.63 16 40 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 2.62 6.06 -2.39 -0.01 2.61 16 43 H 0.00 -0.18 7.74 -2.39 -0.02 -0.19 16 44 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -68.29 339.10 2.86 -65.43 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.54 Total: 24.00 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 4.83 Total: 6.80 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -3.66 Total: -111.20 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.87 Total: -31.83 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.29 2.86 -65.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947113129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.332 kcal (2) G-P(sol) polarization free energy of solvation -68.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds