Wall clock time and date at job start Tue Mar 31 2020 06:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.58348 * 2 1 4 4 C 1.53190 * 109.70132 * 120.36976 * 2 1 3 5 5 C 1.53044 * 109.30817 * 174.50943 * 4 2 1 6 6 H 1.08996 * 109.46188 * 58.63328 * 5 4 2 7 7 N 1.46505 * 109.45545 * 178.60104 * 5 4 2 8 8 C 1.34779 * 119.99695 * 205.02267 * 7 5 4 9 9 O 1.21611 * 119.99836 * 0.02562 * 8 7 5 10 10 C 1.47104 * 119.99859 * 180.02562 * 8 7 5 11 11 C 1.32078 * 118.87677 * 179.73459 * 10 8 7 12 12 C 1.50272 * 122.58058 * 180.14392 * 11 10 8 13 13 O 1.42890 * 110.14438 * 344.80010 * 12 11 10 14 14 C 1.43279 * 113.09765 * 50.33296 * 13 12 11 15 15 C 1.50415 * 118.87603 * 359.97438 * 10 8 7 16 16 C 1.53042 * 109.52641 * 298.61041 * 5 4 2 17 17 C 1.53197 * 109.30803 * 61.37683 * 16 5 4 18 18 N 1.46919 * 108.77453 * 305.36229 * 17 16 5 19 19 C 1.36943 * 120.62906 * 233.63256 * 18 17 16 20 20 H 1.08005 * 119.99970 * 150.16854 * 19 18 17 21 21 C 1.38806 * 119.99987 * 330.16384 * 19 18 17 22 22 N 1.31615 * 120.00151 * 344.49782 * 21 19 18 23 23 Si 1.86805 * 120.00087 * 164.49915 * 21 19 18 24 24 H 1.48500 * 109.46846 * 60.00122 * 23 21 19 25 25 H 1.48501 * 109.47029 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46991 * 300.00207 * 23 21 19 27 27 H 1.08998 * 109.47025 * 180.28448 * 1 2 3 28 28 H 1.08998 * 109.47326 * 300.28429 * 1 2 3 29 29 H 1.09004 * 109.47190 * 60.28139 * 1 2 3 30 30 H 1.09000 * 109.50829 * 54.55316 * 4 2 1 31 31 H 1.09002 * 109.48710 * 294.45096 * 4 2 1 32 32 H 0.96999 * 120.00408 * 25.02737 * 7 5 4 33 33 H 1.08003 * 118.71443 * 0.39105 * 11 10 8 34 34 H 1.08997 * 109.50440 * 224.49078 * 12 11 10 35 35 H 1.09000 * 109.07890 * 104.84281 * 12 11 10 36 36 H 1.08990 * 109.63812 * 171.47752 * 14 13 12 37 37 H 1.08997 * 109.81222 * 50.95424 * 14 13 12 38 38 H 1.09005 * 109.45613 * 283.35575 * 15 10 8 39 39 H 1.09001 * 109.45684 * 43.31420 * 15 10 8 40 40 H 1.08993 * 109.49602 * 181.32613 * 16 5 4 41 41 H 1.09002 * 109.49784 * 301.42420 * 16 5 4 42 42 H 1.08990 * 109.58423 * 65.15117 * 17 16 5 43 43 H 1.09005 * 109.58034 * 185.43348 * 17 16 5 44 44 H 0.97007 * 120.00441 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7292 1.2443 5 6 3.5706 -0.8442 1.1673 6 1 4.0069 0.1521 1.0964 7 7 4.0711 -1.5115 2.3717 8 6 5.3352 -1.2949 2.7862 9 8 6.0601 -0.5452 2.1606 10 6 5.8379 -1.9653 3.9952 11 6 7.0818 -1.7412 4.3783 12 6 7.6814 -2.3839 5.5972 13 8 6.6516 -2.9383 6.4181 14 6 5.7412 -3.7723 5.6911 15 6 4.9194 -2.8869 4.7498 16 6 3.9603 -1.6607 -0.0671 17 6 3.4654 -0.9423 -1.3264 18 7 2.0226 -0.6979 -1.1953 19 6 1.1534 -1.1133 -2.1686 20 1 0.1403 -1.3826 -1.9087 21 6 1.5744 -1.1881 -3.4892 22 7 2.6833 -0.5848 -3.8616 23 14 0.5670 -2.1449 -4.7379 24 1 -0.7948 -1.5598 -4.8281 25 1 1.2260 -2.0710 -6.0666 26 1 0.4688 -3.5641 -4.3117 27 1 -0.3633 -1.0276 0.0051 28 1 -0.3634 0.5182 0.8874 29 1 -0.3634 0.5095 -0.8925 30 1 1.6082 -1.7261 1.2901 31 1 1.7686 -0.1677 2.1363 32 1 3.4928 -2.1093 2.8709 33 1 7.6909 -1.0665 3.7949 34 1 8.2353 -1.6377 6.1668 35 1 8.3605 -3.1770 5.2842 36 1 5.0760 -4.2825 6.3876 37 1 6.2975 -4.5078 5.1102 38 1 4.2111 -2.2971 5.3318 39 1 4.3754 -3.5150 4.0443 40 1 5.0447 -1.7623 -0.1086 41 1 3.5038 -2.6488 -0.0087 42 1 3.9886 0.0077 -1.4345 43 1 3.6548 -1.5653 -2.2006 44 1 2.9777 -0.6374 -4.7844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947235301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:13 Heat of formation + Delta-G solvation = -51.539031 kcal Electronic energy + Delta-G solvation = -24274.977658 eV Core-core repulsion = 20806.849408 eV Total energy + Delta-G solvation = -3468.128250 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32125 -39.00866 -37.61186 -34.64388 -33.95976 -32.40514 -31.54283 -31.09027 -29.49592 -26.61352 -26.17472 -24.80750 -24.00065 -22.23896 -21.57281 -20.21579 -19.49083 -18.41177 -17.73155 -16.64713 -16.32859 -15.71717 -15.52644 -15.32382 -14.94680 -14.68196 -14.00419 -13.84421 -13.76938 -13.61245 -13.26708 -13.07399 -12.87301 -12.66007 -12.60140 -11.84758 -11.60031 -11.22476 -11.14584 -11.07451 -10.93322 -10.88365 -10.65823 -10.33966 -10.31938 -10.11476 -10.04326 -9.74786 -9.72293 -9.34254 -9.33460 -8.69485 -8.41593 -6.63255 -5.76760 -3.21282 1.21996 3.27453 3.32396 3.38364 3.44470 3.44847 3.58572 4.39774 4.49209 4.49332 4.55859 4.86565 4.95036 5.04584 5.23537 5.24178 5.30980 5.37355 5.40219 5.45557 5.56625 5.59033 5.77475 5.98680 6.06137 6.15365 6.23851 6.26124 6.31665 6.42022 6.43463 6.51333 6.64297 6.71867 6.79267 6.90154 7.03488 7.09762 7.37878 7.67213 7.72375 7.82575 8.38188 8.47676 9.22810 9.86395 10.43989 11.31960 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.003285 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.438941 B = 8520.791125 C = 8741.471324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.081 0.919 7 N -0.718 5.718 8 C 0.546 3.454 9 O -0.542 6.542 10 C -0.163 4.163 11 C -0.121 4.121 12 C 0.086 3.914 13 O -0.378 6.378 14 C 0.060 3.940 15 C -0.121 4.121 16 C -0.146 4.146 17 C 0.176 3.824 18 N -0.587 5.587 19 C -0.253 4.253 20 H 0.069 0.931 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.394 0.606 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.020 0.980 43 H 0.088 0.912 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 -5.648 18.849 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.174 4.174 5 C 0.046 3.954 6 H 0.100 0.900 7 N -0.368 5.368 8 C 0.333 3.667 9 O -0.421 6.421 10 C -0.166 4.166 11 C -0.141 4.141 12 C 0.010 3.990 13 O -0.297 6.297 14 C -0.017 4.017 15 C -0.158 4.158 16 C -0.186 4.186 17 C 0.049 3.951 18 N -0.311 5.311 19 C -0.383 4.383 20 H 0.087 0.913 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.229 0.771 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.106 0.894 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.510 -5.046 18.388 19.848 hybrid contribution -0.694 -0.790 -0.877 1.369 sum 4.816 -5.837 17.511 19.076 Atomic orbital electron populations 1.21788 0.95729 1.01361 1.00371 1.20355 0.93080 0.93584 0.86608 0.95572 1.22379 0.93648 1.01627 0.99708 1.21069 0.94248 0.96813 0.83237 0.90048 1.46259 1.13092 1.48309 1.29099 1.18382 0.82236 0.81601 0.84446 1.90794 1.56548 1.37542 1.57184 1.20970 0.96480 1.01872 0.97297 1.23685 0.96057 0.97323 0.97045 1.21588 0.89831 0.97552 0.90061 1.88128 1.41294 1.65757 1.34485 1.22654 0.91939 0.91952 0.95139 1.21093 0.98186 0.97906 0.98608 1.22568 0.99691 0.99560 0.96821 1.20720 0.83269 0.97274 0.93787 1.44149 1.02899 1.64976 1.19053 1.19116 0.95265 1.37794 0.86111 0.91317 1.25110 0.97905 0.99495 0.97004 1.70014 1.24211 1.43591 1.16777 0.86403 0.79616 0.80195 0.80719 1.20906 1.21681 1.21085 0.92808 0.94313 0.91810 0.91824 0.92693 0.77136 0.84611 0.87024 0.90990 0.88061 0.92406 0.89327 0.89492 0.92948 0.92707 0.96161 0.89401 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.96 37.16 0.30 -2.18 16 2 C 0.17 3.49 3.49 -67.60 -0.24 3.26 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.24 4.84 -26.61 -0.13 -2.37 16 5 C 0.15 2.65 2.42 -67.88 -0.16 2.48 16 6 H 0.08 1.63 7.57 -51.93 -0.39 1.24 16 7 N -0.72 -10.37 5.02 -54.94 -0.28 -10.64 16 8 C 0.55 8.47 7.69 -12.66 -0.10 8.37 16 9 O -0.54 -10.61 15.72 5.27 0.08 -10.52 16 10 C -0.16 -1.93 5.86 -103.09 -0.60 -2.54 16 11 C -0.12 -1.31 9.58 -36.44 -0.35 -1.66 16 12 C 0.09 0.70 7.04 35.80 0.25 0.95 16 13 O -0.38 -3.63 10.83 -35.23 -0.38 -4.01 16 14 C 0.06 0.46 6.88 37.23 0.26 0.72 16 15 C -0.12 -1.04 5.29 -27.95 -0.15 -1.19 16 16 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 17 C 0.18 4.28 5.28 -3.71 -0.02 4.26 16 18 N -0.59 -14.41 2.99 -164.78 -0.49 -14.90 16 19 C -0.25 -6.74 8.57 -15.06 -0.13 -6.86 16 20 H 0.07 1.77 6.24 -52.48 -0.33 1.44 16 21 C 0.00 0.10 4.94 -17.43 -0.09 0.02 16 22 N -0.90 -26.21 11.23 55.49 0.62 -25.59 16 23 Si 0.90 21.51 29.58 -169.99 -5.03 16.48 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.05 0.98 7.43 -51.93 -0.39 0.60 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.27 7.63 -51.93 -0.40 0.88 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.39 4.50 6.91 -40.82 -0.28 4.22 16 33 H 0.14 1.59 7.29 -52.48 -0.38 1.20 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.41 8.10 -51.93 -0.42 -0.02 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.65 7.31 -51.93 -0.38 0.27 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -32.09 344.69 -8.66 -40.75 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.07 Total: 3.07 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.31 Total: 0.17 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.14 Total: -51.13 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.30 Total: -14.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.09 -8.66 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947235301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.790 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds