Wall clock time and date at job start Tue Mar 31 2020 06:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.58663 * 2 1 4 4 C 1.53190 * 109.70271 * 239.64566 * 2 1 3 5 5 C 1.53045 * 109.31162 * 185.50645 * 4 2 1 6 6 H 1.08997 * 109.44774 * 181.38057 * 5 4 2 7 7 N 1.46503 * 109.45775 * 301.34496 * 5 4 2 8 8 C 1.34781 * 119.99652 * 205.06418 * 7 5 4 9 9 O 1.21281 * 119.99802 * 0.02562 * 8 7 5 10 10 C 1.50699 * 119.99624 * 180.02562 * 8 7 5 11 11 H 1.08996 * 115.51210 * 325.36767 * 10 8 7 12 12 C 1.53002 * 117.43109 * 110.65779 * 10 8 7 13 13 H 1.08993 * 119.80866 * 355.36215 * 12 10 8 14 14 C 1.54479 * 118.06426 * 198.08033 * 12 10 8 15 15 O 1.44427 * 104.80478 * 321.13378 * 14 12 10 16 16 C 1.45920 * 105.86102 * 319.96693 * 15 14 12 17 17 C 1.53002 * 117.43054 * 180.02562 * 10 8 7 18 18 H 1.09006 * 119.80607 * 4.62882 * 17 10 8 19 19 C 1.53037 * 109.53771 * 61.36368 * 5 4 2 20 20 C 1.53188 * 109.31605 * 298.63836 * 19 5 4 21 21 N 1.46920 * 109.58785 * 120.28259 * 2 1 3 22 22 C 1.36943 * 120.63182 * 353.56172 * 21 2 1 23 23 H 1.08009 * 119.99582 * 29.00960 * 22 21 2 24 24 C 1.38805 * 120.00419 * 209.00707 * 22 21 2 25 25 N 1.31629 * 119.99881 * 15.01432 * 24 22 21 26 26 Si 1.86799 * 120.00432 * 195.01996 * 24 22 21 27 27 H 1.48491 * 109.47373 * 59.99622 * 26 24 22 28 28 H 1.48501 * 109.47572 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46633 * 299.99671 * 26 24 22 30 30 H 1.08995 * 109.46845 * 299.71432 * 1 2 3 31 31 H 1.08996 * 109.46897 * 59.71971 * 1 2 3 32 32 H 1.09004 * 109.47012 * 179.71444 * 1 2 3 33 33 H 1.08995 * 109.49980 * 65.55837 * 4 2 1 34 34 H 1.08996 * 109.50138 * 305.45523 * 4 2 1 35 35 H 0.96994 * 120.00387 * 25.07171 * 7 5 4 36 36 H 1.09000 * 110.37253 * 79.96191 * 14 12 10 37 37 H 1.08996 * 110.37682 * 202.18477 * 14 12 10 38 38 H 1.09003 * 110.59861 * 280.94996 * 16 15 14 39 39 H 1.09004 * 110.84674 * 158.13766 * 16 15 14 40 40 H 1.08998 * 109.49629 * 58.58709 * 19 5 4 41 41 H 1.09000 * 109.49988 * 178.68306 * 19 5 4 42 42 H 1.09000 * 109.59337 * 174.42376 * 20 19 5 43 43 H 1.09004 * 109.58631 * 294.84651 * 20 19 5 44 44 H 0.96999 * 120.00153 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5706 -0.8443 -1.1674 6 1 3.9428 -1.3408 -2.0635 7 7 4.1573 0.4948 -1.0720 8 6 5.4210 0.7081 -1.4892 9 8 6.0723 -0.2085 -1.9439 10 6 6.0247 2.0853 -1.3906 11 1 5.3343 2.9131 -1.5523 12 6 7.1452 2.2924 -0.3695 13 1 7.4230 1.4802 0.3021 14 6 7.4831 3.7386 0.0554 15 8 7.3719 4.5151 -1.1573 16 6 7.9483 3.6897 -2.2136 17 6 7.4630 2.2613 -1.8817 18 1 7.9811 1.4255 -2.3521 19 6 3.9603 -1.6607 0.0670 20 6 3.4654 -0.9425 1.3264 21 7 2.0226 -0.6980 1.1953 22 6 1.1534 -1.1133 2.1686 23 1 0.1365 -1.3702 1.9106 24 6 1.5791 -1.2042 3.4866 25 7 2.7006 -0.6235 3.8575 26 14 0.5606 -2.1508 4.7340 27 1 0.4347 -3.5651 4.2994 28 1 1.2270 -2.0974 6.0601 29 1 -0.7901 -1.5417 4.8345 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.7689 -0.1672 -2.1364 34 1 1.6081 -1.7257 -1.2906 35 1 3.6363 1.2278 -0.7086 36 1 6.7691 4.0923 0.7991 37 1 8.4979 3.7910 0.4497 38 1 9.0369 3.7368 -2.1862 39 1 7.5789 3.9978 -3.1918 40 1 3.5038 -2.6487 0.0086 41 1 5.0447 -1.7623 0.1085 42 1 3.6524 -1.5665 2.2003 43 1 3.9886 0.0076 1.4346 44 1 2.9983 -0.6873 4.7785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947635581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:36 Heat of formation + Delta-G solvation = -28.143217 kcal Electronic energy + Delta-G solvation = -24768.707843 eV Core-core repulsion = 21301.594111 eV Total energy + Delta-G solvation = -3467.113732 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73279 -39.27981 -37.56555 -34.46285 -34.15727 -32.35555 -31.23775 -29.68445 -28.88890 -26.68847 -26.24157 -24.94792 -22.65956 -21.84723 -20.77900 -20.61546 -19.85384 -18.64690 -17.71381 -16.41892 -16.08012 -15.61355 -15.42818 -15.24333 -15.08414 -14.47234 -14.05732 -13.87900 -13.75280 -13.33129 -13.00484 -12.81129 -12.74211 -12.42424 -11.90014 -11.82029 -11.71582 -11.44255 -11.22139 -11.00834 -10.70720 -10.64165 -10.45565 -10.40404 -10.34575 -10.16124 -10.09432 -9.87886 -9.69528 -9.53340 -9.31724 -8.61576 -8.46862 -6.65313 -5.79216 -3.23346 2.58929 3.21587 3.36699 3.43011 3.43768 3.58873 3.81114 4.47094 4.51730 4.52806 4.69665 4.74191 5.12861 5.21409 5.24905 5.31544 5.34733 5.39719 5.45033 5.50812 5.60298 5.61278 5.66244 5.79670 5.94355 5.97939 6.09519 6.22662 6.29461 6.35844 6.43159 6.50463 6.55732 6.61063 6.75298 6.94280 7.01296 7.03180 7.37049 7.67367 7.80126 7.84566 8.44709 8.49790 9.20529 9.84049 10.40406 11.28901 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019509 B = 0.004159 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.896398 B = 6731.336431 C = 7330.366950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.020 0.980 4 C -0.139 4.139 5 C 0.154 3.846 6 H 0.072 0.928 7 N -0.705 5.705 8 C 0.544 3.456 9 O -0.550 6.550 10 C -0.142 4.142 11 H 0.124 0.876 12 C -0.169 4.169 13 H 0.130 0.870 14 C 0.073 3.927 15 O -0.379 6.379 16 C 0.073 3.927 17 C -0.171 4.171 18 H 0.134 0.866 19 C -0.154 4.154 20 C 0.176 3.824 21 N -0.586 5.586 22 C -0.251 4.251 23 H 0.069 0.931 24 C 0.003 3.997 25 N -0.904 5.904 26 Si 0.901 3.099 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.403 0.597 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.018 0.982 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.825 6.728 -10.588 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.061 3.939 3 H 0.037 0.963 4 C -0.178 4.178 5 C 0.050 3.950 6 H 0.090 0.910 7 N -0.356 5.356 8 C 0.330 3.670 9 O -0.428 6.428 10 C -0.164 4.164 11 H 0.142 0.858 12 C -0.188 4.188 13 H 0.148 0.852 14 C -0.003 4.003 15 O -0.298 6.298 16 C -0.004 4.004 17 C -0.189 4.189 18 H 0.152 0.848 19 C -0.194 4.194 20 C 0.050 3.950 21 N -0.310 5.310 22 C -0.381 4.381 23 H 0.087 0.913 24 C -0.195 4.195 25 N -0.548 5.548 26 Si 0.731 3.269 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.238 0.762 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.036 0.964 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.241 6.288 -10.743 14.401 hybrid contribution -0.638 -0.452 0.996 1.266 sum 6.603 5.836 -9.747 13.140 Atomic orbital electron populations 1.21803 0.95835 1.01495 1.00308 1.20381 0.93170 0.93118 0.87224 0.96264 1.22364 0.93901 1.02341 0.99233 1.20904 0.93084 0.82257 0.98752 0.91021 1.46059 1.13873 1.12727 1.62938 1.19373 0.81852 0.88388 0.77389 1.90659 1.61146 1.44603 1.46413 1.22090 0.92559 0.97211 1.04496 0.85849 1.24014 1.01870 0.99797 0.93089 0.85167 1.22957 1.01592 0.87630 0.88155 1.89349 1.82197 1.40474 1.17795 1.23217 0.97899 0.87014 0.92228 1.23975 0.97164 0.99687 0.98114 0.84812 1.22559 0.99803 0.99453 0.97565 1.20717 0.83095 0.97109 0.94059 1.44124 1.02942 1.65037 1.18890 1.19137 0.94887 1.37802 0.86267 0.91313 1.25067 0.97808 0.99693 0.96940 1.70005 1.23441 1.44498 1.16858 0.86401 0.79633 0.80200 0.80691 1.21083 1.21709 1.20934 0.91909 0.94306 0.92702 0.92599 0.90659 0.76161 0.88164 0.90879 0.90754 0.88473 0.91829 0.92928 0.89551 0.96413 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.95 37.16 0.30 -2.14 16 2 C 0.17 3.22 3.19 -67.60 -0.22 3.00 16 3 H 0.02 0.38 6.64 -51.93 -0.34 0.03 16 4 C -0.14 -2.29 5.08 -26.61 -0.14 -2.42 16 5 C 0.15 2.66 2.78 -67.89 -0.19 2.47 16 6 H 0.07 1.25 7.58 -51.93 -0.39 0.86 16 7 N -0.71 -11.33 4.26 -53.76 -0.23 -11.56 16 8 C 0.54 8.79 7.57 -10.98 -0.08 8.71 16 9 O -0.55 -10.50 16.00 5.56 0.09 -10.41 16 10 C -0.14 -1.86 5.55 -91.77 -0.51 -2.37 16 11 H 0.12 1.50 8.06 -51.93 -0.42 1.08 16 12 C -0.17 -2.03 6.95 -89.03 -0.62 -2.65 16 13 H 0.13 1.65 8.14 -51.93 -0.42 1.22 16 14 C 0.07 0.77 7.56 37.93 0.29 1.05 16 15 O -0.38 -4.44 11.33 -35.23 -0.40 -4.83 16 16 C 0.07 0.69 7.66 37.93 0.29 0.99 16 17 C -0.17 -1.96 6.64 -89.03 -0.59 -2.55 16 18 H 0.13 1.61 7.81 -51.93 -0.41 1.20 16 19 C -0.15 -3.03 5.77 -26.61 -0.15 -3.19 16 20 C 0.18 4.08 5.03 -3.71 -0.02 4.06 16 21 N -0.59 -13.75 2.99 -164.78 -0.49 -14.24 16 22 C -0.25 -6.53 8.60 -15.06 -0.13 -6.66 16 23 H 0.07 1.74 6.21 -52.48 -0.33 1.42 16 24 C 0.00 0.09 4.96 -17.43 -0.09 0.01 16 25 N -0.90 -25.54 11.14 55.49 0.62 -24.93 16 26 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.06 1.21 7.62 -51.93 -0.40 0.82 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.99 7.44 -51.93 -0.39 0.61 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.40 6.18 6.87 -40.82 -0.28 5.90 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 43 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -30.15 343.69 -9.15 -39.30 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.03 Total: 6.92 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.86 Total: -1.69 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.10 Total: -50.73 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.31 Total: -15.24 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.15 -9.15 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947635581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.160 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds