Wall clock time and date at job start Tue Mar 31 2020 06:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.58663 * 2 1 4 4 C 1.53190 * 109.70271 * 239.64566 * 2 1 3 5 5 C 1.53045 * 109.31162 * 185.50645 * 4 2 1 6 6 H 1.08997 * 109.44774 * 181.38057 * 5 4 2 7 7 N 1.46503 * 109.45775 * 301.34496 * 5 4 2 8 8 C 1.34781 * 119.99652 * 205.06418 * 7 5 4 9 9 O 1.21281 * 119.99802 * 0.02562 * 8 7 5 10 10 C 1.50699 * 119.99624 * 180.02562 * 8 7 5 11 11 H 1.08996 * 115.51210 * 325.36767 * 10 8 7 12 12 C 1.53002 * 117.43109 * 110.65779 * 10 8 7 13 13 H 1.08993 * 119.80866 * 355.36215 * 12 10 8 14 14 C 1.54479 * 118.06426 * 198.08033 * 12 10 8 15 15 O 1.44427 * 104.80478 * 321.13378 * 14 12 10 16 16 C 1.45920 * 105.86102 * 319.96693 * 15 14 12 17 17 C 1.53002 * 117.43054 * 180.02562 * 10 8 7 18 18 H 1.09006 * 119.80607 * 4.62882 * 17 10 8 19 19 C 1.53037 * 109.53771 * 61.36368 * 5 4 2 20 20 C 1.53188 * 109.31605 * 298.63836 * 19 5 4 21 21 N 1.46920 * 109.58785 * 120.28259 * 2 1 3 22 22 C 1.36943 * 120.63182 * 353.56172 * 21 2 1 23 23 H 1.08009 * 119.99582 * 29.00960 * 22 21 2 24 24 C 1.38805 * 120.00419 * 209.00707 * 22 21 2 25 25 N 1.31629 * 119.99881 * 15.01432 * 24 22 21 26 26 Si 1.86799 * 120.00432 * 195.01996 * 24 22 21 27 27 H 1.48491 * 109.47373 * 59.99622 * 26 24 22 28 28 H 1.48501 * 109.47572 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46633 * 299.99671 * 26 24 22 30 30 H 1.08995 * 109.46845 * 299.71432 * 1 2 3 31 31 H 1.08996 * 109.46897 * 59.71971 * 1 2 3 32 32 H 1.09004 * 109.47012 * 179.71444 * 1 2 3 33 33 H 1.08995 * 109.49980 * 65.55837 * 4 2 1 34 34 H 1.08996 * 109.50138 * 305.45523 * 4 2 1 35 35 H 0.96994 * 120.00387 * 25.07171 * 7 5 4 36 36 H 1.09000 * 110.37253 * 79.96191 * 14 12 10 37 37 H 1.08996 * 110.37682 * 202.18477 * 14 12 10 38 38 H 1.09003 * 110.59861 * 280.94996 * 16 15 14 39 39 H 1.09004 * 110.84674 * 158.13766 * 16 15 14 40 40 H 1.08998 * 109.49629 * 58.58709 * 19 5 4 41 41 H 1.09000 * 109.49988 * 178.68306 * 19 5 4 42 42 H 1.09000 * 109.59337 * 174.42376 * 20 19 5 43 43 H 1.09004 * 109.58631 * 294.84651 * 20 19 5 44 44 H 0.96999 * 120.00153 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5706 -0.8443 -1.1674 6 1 3.9428 -1.3408 -2.0635 7 7 4.1573 0.4948 -1.0720 8 6 5.4210 0.7081 -1.4892 9 8 6.0723 -0.2085 -1.9439 10 6 6.0247 2.0853 -1.3906 11 1 5.3343 2.9131 -1.5523 12 6 7.1452 2.2924 -0.3695 13 1 7.4230 1.4802 0.3021 14 6 7.4831 3.7386 0.0554 15 8 7.3719 4.5151 -1.1573 16 6 7.9483 3.6897 -2.2136 17 6 7.4630 2.2613 -1.8817 18 1 7.9811 1.4255 -2.3521 19 6 3.9603 -1.6607 0.0670 20 6 3.4654 -0.9425 1.3264 21 7 2.0226 -0.6980 1.1953 22 6 1.1534 -1.1133 2.1686 23 1 0.1365 -1.3702 1.9106 24 6 1.5791 -1.2042 3.4866 25 7 2.7006 -0.6235 3.8575 26 14 0.5606 -2.1508 4.7340 27 1 0.4347 -3.5651 4.2994 28 1 1.2270 -2.0974 6.0601 29 1 -0.7901 -1.5417 4.8345 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.7689 -0.1672 -2.1364 34 1 1.6081 -1.7257 -1.2906 35 1 3.6363 1.2278 -0.7086 36 1 6.7691 4.0923 0.7991 37 1 8.4979 3.7910 0.4497 38 1 9.0369 3.7368 -2.1862 39 1 7.5789 3.9978 -3.1918 40 1 3.5038 -2.6487 0.0086 41 1 5.0447 -1.7623 0.1085 42 1 3.6524 -1.5665 2.2003 43 1 3.9886 0.0076 1.4346 44 1 2.9983 -0.6873 4.7785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947635581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:35 Heat of formation + Delta-G solvation = -47.058024 kcal Electronic energy + Delta-G solvation = -24769.528050 eV Core-core repulsion = 21301.594111 eV Total energy + Delta-G solvation = -3467.933939 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.79081 -40.55241 -39.04312 -35.94602 -35.25566 -34.09051 -32.84265 -31.39911 -29.68620 -28.14122 -27.42019 -26.72168 -24.00814 -23.35382 -22.22270 -21.66556 -20.99157 -20.24322 -18.82876 -18.24135 -17.12995 -16.96287 -16.73467 -16.43564 -16.25576 -15.91027 -15.57092 -15.49767 -15.14105 -14.82647 -14.38916 -14.27148 -13.99108 -13.55255 -13.36345 -13.21934 -12.82489 -12.74399 -12.66949 -12.57882 -12.49772 -12.31833 -12.18935 -11.98546 -11.70944 -11.42197 -11.38831 -11.24187 -11.00580 -10.98450 -10.57916 -10.49258 -10.03279 -8.58973 -7.81815 -5.27056 1.38704 1.47565 1.49927 1.55389 2.06048 2.53547 2.57213 2.91961 3.33595 3.54370 3.60200 3.63135 3.71004 3.85377 3.91813 4.06215 4.12758 4.19276 4.32303 4.42669 4.50369 4.59784 4.66636 4.69952 4.76966 4.78262 4.82576 4.86321 4.92270 4.96793 4.99225 5.03632 5.10578 5.16564 5.41005 5.53776 5.54973 5.59321 5.70426 5.73804 5.77093 6.45044 6.54661 7.20265 7.20609 7.92708 8.43693 9.24227 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019509 B = 0.004159 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.896398 B = 6731.336431 C = 7330.366950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.160 3.840 3 H 0.024 0.976 4 C -0.125 4.125 5 C 0.159 3.841 6 H 0.077 0.923 7 N -0.703 5.703 8 C 0.543 3.457 9 O -0.582 6.582 10 C -0.153 4.153 11 H 0.135 0.865 12 C -0.175 4.175 13 H 0.118 0.882 14 C 0.077 3.923 15 O -0.395 6.395 16 C 0.076 3.924 17 C -0.160 4.160 18 H 0.128 0.872 19 C -0.142 4.142 20 C 0.189 3.811 21 N -0.601 5.601 22 C -0.249 4.249 23 H 0.076 0.924 24 C -0.052 4.052 25 N -0.937 5.937 26 Si 0.958 3.042 27 H -0.282 1.282 28 H -0.300 1.300 29 H -0.275 1.275 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.407 0.593 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.000 1.000 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.335 7.670 -12.363 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 H 0.041 0.959 4 C -0.164 4.164 5 C 0.055 3.945 6 H 0.095 0.905 7 N -0.353 5.353 8 C 0.330 3.670 9 O -0.463 6.463 10 C -0.174 4.174 11 H 0.153 0.847 12 C -0.194 4.194 13 H 0.136 0.864 14 C 0.001 3.999 15 O -0.314 6.314 16 C 0.000 4.000 17 C -0.178 4.178 18 H 0.145 0.855 19 C -0.182 4.182 20 C 0.063 3.937 21 N -0.325 5.325 22 C -0.379 4.379 23 H 0.093 0.907 24 C -0.247 4.247 25 N -0.583 5.583 26 Si 0.787 3.213 27 H -0.208 1.208 28 H -0.226 1.226 29 H -0.201 1.201 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.244 0.756 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.018 0.982 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.723 7.245 -12.547 15.972 hybrid contribution -0.473 -0.743 1.498 1.738 sum 6.250 6.502 -11.048 14.262 Atomic orbital electron populations 1.21738 0.94479 1.01435 1.01129 1.20650 0.94369 0.93162 0.86402 0.95869 1.22235 0.92690 1.02511 0.98975 1.20784 0.93962 0.82559 0.97222 0.90528 1.46025 1.14115 1.12321 1.62816 1.19865 0.81465 0.89289 0.76332 1.90638 1.61783 1.45984 1.47869 1.22037 0.93555 0.95512 1.06259 0.84685 1.24072 1.01138 1.00672 0.93499 0.86381 1.23021 1.02773 0.86137 0.87978 1.89334 1.82641 1.41001 1.18456 1.23395 0.99130 0.85100 0.92341 1.24047 0.95473 1.00898 0.97427 0.85460 1.22376 0.99032 0.99457 0.97312 1.20380 0.83500 0.95684 0.94111 1.44341 1.02578 1.65799 1.19783 1.19480 0.95322 1.36380 0.86763 0.90684 1.25744 0.98996 1.01153 0.98777 1.70161 1.25176 1.46420 1.16571 0.85476 0.78493 0.79062 0.78237 1.20802 1.22606 1.20053 0.94051 0.90496 0.93194 0.89212 0.90627 0.75644 0.88023 0.88895 0.88531 0.86928 0.92008 0.93791 0.93504 0.98239 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.95 71.98 0.57 -3.75 16 2 C 0.16 5.85 3.19 44.98 0.14 5.99 16 3 H 0.02 0.86 6.64 -2.39 -0.02 0.84 16 4 C -0.12 -3.79 5.08 30.67 0.16 -3.63 16 5 C 0.16 5.30 2.78 45.02 0.13 5.43 16 6 H 0.08 2.55 7.58 -2.39 -0.02 2.53 16 7 N -0.70 -21.90 4.26 -442.39 -1.89 -23.79 16 8 C 0.54 17.23 7.57 87.66 0.66 17.90 16 9 O -0.58 -22.10 16.00 -3.03 -0.05 -22.15 16 10 C -0.15 -3.84 5.55 -11.54 -0.06 -3.91 16 11 H 0.14 3.06 8.06 -2.39 -0.02 3.04 16 12 C -0.17 -4.07 6.95 -9.76 -0.07 -4.14 16 13 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 14 C 0.08 1.49 7.56 72.48 0.55 2.04 16 15 O -0.39 -8.33 11.33 -148.98 -1.69 -10.02 16 16 C 0.08 1.25 7.66 72.48 0.56 1.81 16 17 C -0.16 -3.44 6.64 -9.77 -0.06 -3.50 16 18 H 0.13 2.94 7.81 -2.38 -0.02 2.92 16 19 C -0.14 -5.64 5.77 30.67 0.18 -5.46 16 20 C 0.19 9.01 5.03 86.36 0.43 9.45 16 21 N -0.60 -28.20 2.99 -675.23 -2.02 -30.22 16 22 C -0.25 -12.98 8.60 84.03 0.72 -12.25 16 23 H 0.08 3.76 6.21 -2.91 -0.02 3.74 16 24 C -0.05 -2.83 4.96 84.86 0.42 -2.41 16 25 N -0.94 -54.66 11.14 21.65 0.24 -54.42 16 26 Si 0.96 44.36 29.58 68.60 2.03 46.39 16 27 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 30 H 0.04 1.53 7.62 -2.39 -0.02 1.51 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.69 7.44 -2.38 -0.02 1.67 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.41 12.02 6.87 -92.71 -0.64 11.38 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 2.60 6.06 -2.39 -0.01 2.58 16 43 H 0.00 -0.02 7.74 -2.38 -0.02 -0.04 16 44 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -65.81 343.69 1.31 -64.50 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.36 Total: 26.13 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 4.32 Total: 3.57 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -3.67 Total: -108.43 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.74 Total: -32.17 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.81 1.31 -64.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947635581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.446 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds