Wall clock time and date at job start Tue Mar 31 2020 06:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.69883 * 2 1 4 4 C 1.53190 * 109.58865 * 120.36167 * 2 1 3 5 5 C 1.53039 * 109.31102 * 174.42084 * 4 2 1 6 6 H 1.08998 * 109.46139 * 58.64301 * 5 4 2 7 7 N 1.46503 * 109.45676 * 178.61451 * 5 4 2 8 8 C 1.34776 * 120.00031 * 205.00150 * 7 5 4 9 9 O 1.21285 * 119.99656 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00459 * 180.02562 * 8 7 5 11 11 H 1.09003 * 115.50310 * 325.36861 * 10 8 7 12 12 C 1.55591 * 117.11939 * 111.43407 * 10 8 7 13 13 H 1.09002 * 120.44637 * 355.76979 * 12 10 8 14 14 C 1.54482 * 118.07982 * 197.71514 * 12 10 8 15 15 O 1.44420 * 104.80644 * 321.75461 * 14 12 10 16 16 C 1.44429 * 105.27537 * 319.48628 * 15 14 12 17 17 C 1.52998 * 117.43475 * 180.02562 * 10 8 7 18 18 H 1.09003 * 119.80917 * 5.64437 * 17 10 8 19 19 C 1.53039 * 109.54028 * 298.62916 * 5 4 2 20 20 C 1.53194 * 109.30785 * 61.36934 * 19 5 4 21 21 N 1.46928 * 108.77722 * 305.36150 * 20 19 5 22 22 C 1.36929 * 120.63365 * 233.63323 * 21 20 19 23 23 H 1.08006 * 120.00270 * 150.14180 * 22 21 20 24 24 C 1.38814 * 120.00291 * 330.14412 * 22 21 20 25 25 N 1.31625 * 119.99568 * 344.50005 * 24 22 21 26 26 Si 1.86790 * 120.00388 * 164.50139 * 24 22 21 27 27 H 1.48504 * 109.47275 * 89.99855 * 26 24 22 28 28 H 1.48503 * 109.47420 * 209.99948 * 26 24 22 29 29 H 1.48503 * 109.47338 * 329.99782 * 26 24 22 30 30 H 1.09003 * 109.46706 * 299.64016 * 1 2 3 31 31 H 1.08996 * 109.47498 * 59.64007 * 1 2 3 32 32 H 1.09002 * 109.46950 * 179.64284 * 1 2 3 33 33 H 1.09000 * 109.49766 * 54.46588 * 4 2 1 34 34 H 1.09003 * 109.52257 * 294.38909 * 4 2 1 35 35 H 0.97003 * 120.00385 * 24.99605 * 7 5 4 36 36 H 1.09005 * 110.37254 * 202.92139 * 14 12 10 37 37 H 1.08998 * 110.37276 * 80.58923 * 14 12 10 38 38 H 1.09002 * 110.37239 * 159.33904 * 16 15 14 39 39 H 1.08995 * 110.37478 * 281.68207 * 16 15 14 40 40 H 1.08996 * 109.49922 * 181.31926 * 19 5 4 41 41 H 1.08995 * 109.50098 * 301.42183 * 19 5 4 42 42 H 1.09005 * 109.58801 * 185.58059 * 20 19 5 43 43 H 1.08999 * 109.70610 * 65.21936 * 20 19 5 44 44 H 0.96998 * 119.99923 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5676 -0.8481 1.1699 6 1 4.0062 0.1472 1.0989 7 7 4.0653 -1.5160 2.3751 8 6 5.3295 -1.3024 2.7905 9 8 6.0552 -0.5576 2.1663 10 6 5.8418 -1.9898 4.0299 11 1 5.1084 -2.1349 4.8232 12 6 6.9350 -3.0799 3.8359 13 1 7.2531 -3.3711 2.8348 14 6 7.1795 -4.0779 4.9894 15 8 7.0487 -3.2902 6.1928 16 6 7.7007 -2.0354 5.8990 17 6 7.2855 -1.7048 4.4484 18 1 7.8683 -0.9574 3.9099 19 6 3.9569 -1.6658 -0.0637 20 6 3.4650 -0.9469 -1.3239 21 7 2.0225 -0.6995 -1.1946 22 6 1.1536 -1.1133 -2.1686 23 1 0.1397 -1.3808 -1.9097 24 6 1.5758 -1.1892 -3.4888 25 7 2.6863 -0.5880 -3.8602 26 14 0.5680 -2.1442 -4.7384 27 1 -0.4263 -1.2389 -5.3685 28 1 1.4680 -2.6951 -5.7833 29 1 -0.1391 -3.2581 -4.0567 30 1 -0.3633 0.5083 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3633 -1.0277 -0.0064 33 1 1.6030 -1.7254 1.2912 34 1 1.7661 -0.1675 2.1371 35 1 3.4849 -2.1119 2.8742 36 1 8.1819 -4.5004 4.9195 37 1 6.4309 -4.8699 4.9710 38 1 7.3523 -1.2583 6.5794 39 1 8.7829 -2.1446 5.9686 40 1 5.0412 -1.7697 -0.1040 41 1 3.4983 -2.6528 -0.0056 42 1 3.6517 -1.5716 -2.1974 43 1 3.9900 0.0020 -1.4343 44 1 2.9811 -0.6407 -4.7828 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947635582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:39 Heat of formation + Delta-G solvation = -30.019445 kcal Electronic energy + Delta-G solvation = -24162.420025 eV Core-core repulsion = 20695.224934 eV Total energy + Delta-G solvation = -3467.195091 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84718 -39.26807 -37.60156 -34.70639 -34.33695 -32.40692 -31.33287 -29.58617 -29.03276 -26.85519 -26.24863 -24.74396 -22.69733 -21.76775 -20.95114 -20.45149 -19.95548 -19.15642 -17.73901 -16.38318 -16.23742 -15.90182 -15.59828 -15.45108 -15.03843 -14.56279 -13.96169 -13.94785 -13.68536 -13.36667 -13.17751 -12.90758 -12.81736 -12.64729 -12.01494 -11.86516 -11.60507 -11.22562 -11.11736 -10.94361 -10.91135 -10.65938 -10.51993 -10.47455 -10.33089 -10.15550 -10.05385 -10.01855 -9.78433 -9.73289 -9.34452 -8.71368 -8.42346 -6.63345 -5.77254 -3.21427 2.41045 3.07991 3.37217 3.43120 3.44565 3.46008 3.69219 4.30938 4.39140 4.49152 4.51827 4.58593 4.98375 5.06731 5.11303 5.26070 5.29715 5.35529 5.37607 5.41220 5.44041 5.58338 5.63424 5.77147 5.80484 5.98795 6.15333 6.25126 6.31472 6.37732 6.41685 6.42369 6.51043 6.63878 6.78016 6.89029 7.02971 7.09820 7.37425 7.66479 7.71576 7.82688 8.37882 8.47381 9.22498 9.86124 10.43696 11.31584 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028358 B = 0.003204 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.124705 B = 8737.351629 C = 9071.642422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.081 0.919 7 N -0.718 5.718 8 C 0.540 3.460 9 O -0.539 6.539 10 C -0.143 4.143 11 H 0.125 0.875 12 C -0.176 4.176 13 H 0.131 0.869 14 C 0.072 3.928 15 O -0.375 6.375 16 C 0.071 3.929 17 C -0.166 4.166 18 H 0.135 0.865 19 C -0.146 4.146 20 C 0.175 3.825 21 N -0.588 5.588 22 C -0.252 4.252 23 H 0.069 0.931 24 C 0.003 3.997 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.396 0.604 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.020 0.980 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 -4.918 18.094 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.099 0.901 7 N -0.367 5.367 8 C 0.326 3.674 9 O -0.416 6.416 10 C -0.164 4.164 11 H 0.143 0.857 12 C -0.195 4.195 13 H 0.149 0.851 14 C -0.004 4.004 15 O -0.294 6.294 16 C -0.006 4.006 17 C -0.185 4.185 18 H 0.153 0.847 19 C -0.186 4.186 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.382 4.382 23 H 0.087 0.913 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.230 0.770 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.924 -4.427 17.655 19.474 hybrid contribution -0.599 -0.694 -0.758 1.190 sum 6.325 -5.121 16.896 18.754 Atomic orbital electron populations 1.21790 0.95735 1.01439 1.00302 1.20360 0.93092 0.93562 0.86624 0.95569 1.22383 0.93628 1.01681 0.99690 1.21068 0.94299 0.96727 0.83175 0.90090 1.46237 1.13002 1.48369 1.29072 1.19414 0.82160 0.81365 0.84481 1.90713 1.56458 1.37523 1.56934 1.22524 0.93272 1.01947 0.98702 0.85736 1.24455 1.02684 0.91240 1.01088 0.85130 1.22980 1.01868 0.93616 0.81964 1.89164 1.78163 1.27305 1.34738 1.22999 0.97343 0.86426 0.93817 1.24029 0.96987 1.00199 0.97237 0.84685 1.22561 0.99628 0.99602 0.96813 1.20728 0.83296 0.97275 0.93797 1.44162 1.02959 1.64914 1.19071 1.19146 0.95188 1.37728 0.86095 0.91293 1.25115 0.97889 0.99563 0.97017 1.70026 1.24103 1.43791 1.16690 0.86341 0.79395 0.79975 0.81296 1.21427 1.21636 1.20519 0.94303 0.91865 0.92751 0.91774 0.92673 0.77022 0.90800 0.88383 0.88452 0.90819 0.93006 0.92651 0.89407 0.96153 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.95 37.16 0.30 -2.18 16 2 C 0.17 3.48 3.50 -67.59 -0.24 3.24 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.23 4.84 -26.61 -0.13 -2.36 16 5 C 0.15 2.62 2.41 -67.89 -0.16 2.46 16 6 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 7 N -0.72 -10.10 5.08 -53.77 -0.27 -10.37 16 8 C 0.54 7.99 7.58 -10.99 -0.08 7.91 16 9 O -0.54 -10.16 16.01 5.55 0.09 -10.07 16 10 C -0.14 -1.59 5.68 -90.39 -0.51 -2.11 16 11 H 0.12 1.22 8.09 -51.93 -0.42 0.80 16 12 C -0.18 -1.72 7.07 -87.64 -0.62 -2.34 16 13 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.07 0.59 7.54 37.94 0.29 0.87 16 15 O -0.38 -3.70 11.34 -35.23 -0.40 -4.10 16 16 C 0.07 0.59 7.53 37.93 0.29 0.87 16 17 C -0.17 -1.69 6.60 -89.03 -0.59 -2.27 16 18 H 0.14 1.51 7.82 -51.93 -0.41 1.10 16 19 C -0.15 -2.89 5.65 -26.61 -0.15 -3.04 16 20 C 0.18 4.24 5.28 -3.71 -0.02 4.22 16 21 N -0.59 -14.37 2.99 -164.77 -0.49 -14.86 16 22 C -0.25 -6.69 8.58 -15.06 -0.13 -6.82 16 23 H 0.07 1.78 6.23 -52.48 -0.33 1.45 16 24 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 25 N -0.90 -26.15 11.23 55.49 0.62 -25.53 16 26 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 32 H 0.05 1.00 7.40 -51.93 -0.38 0.61 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.40 4.44 8.60 -40.82 -0.35 4.09 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -31.45 348.22 -9.29 -40.74 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.21 Total: 4.05 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.85 Total: -1.55 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.14 Total: -50.76 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.31 Total: -14.17 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.45 -9.29 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947635582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.721 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds