Wall clock time and date at job start Tue Mar 31 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.69883 * 2 1 4 4 C 1.53190 * 109.58865 * 120.36167 * 2 1 3 5 5 C 1.53039 * 109.31102 * 174.42084 * 4 2 1 6 6 H 1.08998 * 109.46139 * 58.64301 * 5 4 2 7 7 N 1.46503 * 109.45676 * 178.61451 * 5 4 2 8 8 C 1.34776 * 120.00031 * 205.00150 * 7 5 4 9 9 O 1.21285 * 119.99656 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00459 * 180.02562 * 8 7 5 11 11 H 1.09003 * 115.50310 * 325.36861 * 10 8 7 12 12 C 1.55591 * 117.11939 * 111.43407 * 10 8 7 13 13 H 1.09002 * 120.44637 * 355.76979 * 12 10 8 14 14 C 1.54482 * 118.07982 * 197.71514 * 12 10 8 15 15 O 1.44420 * 104.80644 * 321.75461 * 14 12 10 16 16 C 1.44429 * 105.27537 * 319.48628 * 15 14 12 17 17 C 1.52998 * 117.43475 * 180.02562 * 10 8 7 18 18 H 1.09003 * 119.80917 * 5.64437 * 17 10 8 19 19 C 1.53039 * 109.54028 * 298.62916 * 5 4 2 20 20 C 1.53194 * 109.30785 * 61.36934 * 19 5 4 21 21 N 1.46928 * 108.77722 * 305.36150 * 20 19 5 22 22 C 1.36929 * 120.63365 * 233.63323 * 21 20 19 23 23 H 1.08006 * 120.00270 * 150.14180 * 22 21 20 24 24 C 1.38814 * 120.00291 * 330.14412 * 22 21 20 25 25 N 1.31625 * 119.99568 * 344.50005 * 24 22 21 26 26 Si 1.86790 * 120.00388 * 164.50139 * 24 22 21 27 27 H 1.48504 * 109.47275 * 89.99855 * 26 24 22 28 28 H 1.48503 * 109.47420 * 209.99948 * 26 24 22 29 29 H 1.48503 * 109.47338 * 329.99782 * 26 24 22 30 30 H 1.09003 * 109.46706 * 299.64016 * 1 2 3 31 31 H 1.08996 * 109.47498 * 59.64007 * 1 2 3 32 32 H 1.09002 * 109.46950 * 179.64284 * 1 2 3 33 33 H 1.09000 * 109.49766 * 54.46588 * 4 2 1 34 34 H 1.09003 * 109.52257 * 294.38909 * 4 2 1 35 35 H 0.97003 * 120.00385 * 24.99605 * 7 5 4 36 36 H 1.09005 * 110.37254 * 202.92139 * 14 12 10 37 37 H 1.08998 * 110.37276 * 80.58923 * 14 12 10 38 38 H 1.09002 * 110.37239 * 159.33904 * 16 15 14 39 39 H 1.08995 * 110.37478 * 281.68207 * 16 15 14 40 40 H 1.08996 * 109.49922 * 181.31926 * 19 5 4 41 41 H 1.08995 * 109.50098 * 301.42183 * 19 5 4 42 42 H 1.09005 * 109.58801 * 185.58059 * 20 19 5 43 43 H 1.08999 * 109.70610 * 65.21936 * 20 19 5 44 44 H 0.96998 * 119.99923 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5676 -0.8481 1.1699 6 1 4.0062 0.1472 1.0989 7 7 4.0653 -1.5160 2.3751 8 6 5.3295 -1.3024 2.7905 9 8 6.0552 -0.5576 2.1663 10 6 5.8418 -1.9898 4.0299 11 1 5.1084 -2.1349 4.8232 12 6 6.9350 -3.0799 3.8359 13 1 7.2531 -3.3711 2.8348 14 6 7.1795 -4.0779 4.9894 15 8 7.0487 -3.2902 6.1928 16 6 7.7007 -2.0354 5.8990 17 6 7.2855 -1.7048 4.4484 18 1 7.8683 -0.9574 3.9099 19 6 3.9569 -1.6658 -0.0637 20 6 3.4650 -0.9469 -1.3239 21 7 2.0225 -0.6995 -1.1946 22 6 1.1536 -1.1133 -2.1686 23 1 0.1397 -1.3808 -1.9097 24 6 1.5758 -1.1892 -3.4888 25 7 2.6863 -0.5880 -3.8602 26 14 0.5680 -2.1442 -4.7384 27 1 -0.4263 -1.2389 -5.3685 28 1 1.4680 -2.6951 -5.7833 29 1 -0.1391 -3.2581 -4.0567 30 1 -0.3633 0.5083 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3633 -1.0277 -0.0064 33 1 1.6030 -1.7254 1.2912 34 1 1.7661 -0.1675 2.1371 35 1 3.4849 -2.1119 2.8742 36 1 8.1819 -4.5004 4.9195 37 1 6.4309 -4.8699 4.9710 38 1 7.3523 -1.2583 6.5794 39 1 8.7829 -2.1446 5.9686 40 1 5.0412 -1.7697 -0.1040 41 1 3.4983 -2.6528 -0.0056 42 1 3.6517 -1.5716 -2.1974 43 1 3.9900 0.0020 -1.4343 44 1 2.9811 -0.6407 -4.7828 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947635582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:38 Heat of formation + Delta-G solvation = -51.091881 kcal Electronic energy + Delta-G solvation = -24163.333794 eV Core-core repulsion = 20695.224934 eV Total energy + Delta-G solvation = -3468.108860 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74149 -40.46364 -39.14167 -36.16234 -35.24906 -34.22376 -32.97721 -31.33470 -29.66736 -28.20648 -27.48774 -26.48747 -24.06301 -23.25493 -21.93229 -21.61816 -21.32884 -20.59714 -18.81499 -18.19555 -17.29021 -17.02006 -16.86225 -16.40444 -16.25982 -15.81855 -15.66557 -15.46041 -15.05367 -14.91197 -14.56633 -14.38621 -14.10449 -13.51544 -13.34624 -12.97069 -12.78520 -12.73144 -12.71328 -12.61883 -12.54869 -12.36368 -12.10949 -11.87236 -11.73729 -11.52037 -11.43155 -11.29552 -11.18386 -10.94500 -10.56717 -10.55773 -10.04168 -8.65006 -7.84516 -5.31415 1.33766 1.47169 1.48787 1.57948 2.00332 2.52568 2.53555 2.95565 3.32041 3.50903 3.57656 3.61693 3.68648 3.85034 3.86127 4.04491 4.11226 4.25276 4.33394 4.37656 4.51256 4.59684 4.68759 4.71262 4.73885 4.77678 4.81592 4.83756 4.87727 4.93865 4.99434 5.05654 5.08881 5.14598 5.37134 5.46486 5.53955 5.55090 5.69342 5.72651 5.73960 6.42719 6.55885 7.16462 7.23463 7.88000 8.41498 9.23156 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028358 B = 0.003204 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.124705 B = 8737.351629 C = 9071.642422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.159 3.841 3 H 0.010 0.990 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.054 0.946 7 N -0.704 5.704 8 C 0.538 3.462 9 O -0.586 6.586 10 C -0.146 4.146 11 H 0.145 0.855 12 C -0.169 4.169 13 H 0.124 0.876 14 C 0.076 3.924 15 O -0.389 6.389 16 C 0.076 3.924 17 C -0.170 4.170 18 H 0.119 0.881 19 C -0.129 4.129 20 C 0.184 3.816 21 N -0.603 5.603 22 C -0.250 4.250 23 H 0.080 0.920 24 C -0.057 4.057 25 N -0.941 5.941 26 Si 0.965 3.035 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.266 1.266 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.416 0.584 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.054 0.946 43 H -0.014 1.014 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.317 -6.589 21.007 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.027 0.973 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.072 0.928 7 N -0.354 5.354 8 C 0.326 3.674 9 O -0.466 6.466 10 C -0.167 4.167 11 H 0.163 0.837 12 C -0.188 4.188 13 H 0.142 0.858 14 C 0.000 4.000 15 O -0.308 6.308 16 C -0.001 4.001 17 C -0.189 4.189 18 H 0.137 0.863 19 C -0.169 4.169 20 C 0.057 3.943 21 N -0.327 5.327 22 C -0.380 4.380 23 H 0.098 0.902 24 C -0.251 4.251 25 N -0.588 5.588 26 Si 0.793 3.207 27 H -0.213 1.213 28 H -0.225 1.225 29 H -0.190 1.190 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.253 0.747 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.004 0.996 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.759 -6.126 20.630 22.277 hybrid contribution -0.212 -0.106 -1.641 1.658 sum 5.547 -6.231 18.989 20.741 Atomic orbital electron populations 1.21707 0.93768 1.01753 1.01145 1.20648 0.94797 0.92825 0.86493 0.97259 1.22184 0.92316 1.02345 0.98850 1.20674 0.95080 0.95109 0.83473 0.92793 1.45952 1.13292 1.48251 1.27889 1.20059 0.81681 0.80593 0.85086 1.90701 1.57627 1.39624 1.58697 1.22413 0.94238 1.02842 0.97240 0.83705 1.24544 1.01015 0.91617 1.01599 0.85804 1.23113 1.03389 0.93100 0.80437 1.89153 1.78509 1.27824 1.35348 1.23087 0.98299 0.86278 0.92397 1.24079 0.95942 1.00187 0.98724 0.86257 1.22292 0.98892 0.99636 0.96080 1.20427 0.83742 0.95358 0.94742 1.44427 1.02590 1.65616 1.20086 1.19544 0.95700 1.36250 0.86518 0.90205 1.25903 0.99149 1.01023 0.99071 1.70206 1.26148 1.45902 1.16540 0.85317 0.77748 0.78864 0.78779 1.21282 1.22497 1.19044 0.90405 0.94183 0.92530 0.90463 0.89236 0.74738 0.89040 0.86983 0.87400 0.89085 0.93858 0.91872 0.92786 0.99603 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 7.95 71.98 0.57 -3.77 16 2 C 0.16 6.31 3.50 44.97 0.16 6.47 16 3 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 4 C -0.12 -3.62 4.84 30.67 0.15 -3.47 16 5 C 0.16 5.51 2.41 45.02 0.11 5.61 16 6 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 7 N -0.70 -18.49 5.08 -442.40 -2.25 -20.73 16 8 C 0.54 15.44 7.58 87.66 0.66 16.11 16 9 O -0.59 -22.51 16.01 -3.05 -0.05 -22.56 16 10 C -0.15 -2.97 5.68 -10.65 -0.06 -3.03 16 11 H 0.15 2.36 8.09 -2.39 -0.02 2.35 16 12 C -0.17 -2.97 7.07 -8.87 -0.06 -3.03 16 13 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.08 0.99 7.54 72.49 0.55 1.54 16 15 O -0.39 -6.45 11.34 -148.98 -1.69 -8.14 16 16 C 0.08 1.06 7.53 72.48 0.55 1.60 16 17 C -0.17 -3.21 6.60 -9.76 -0.06 -3.28 16 18 H 0.12 2.65 7.82 -2.39 -0.02 2.64 16 19 C -0.13 -5.19 5.65 30.67 0.17 -5.02 16 20 C 0.18 9.32 5.28 86.36 0.46 9.78 16 21 N -0.60 -29.94 2.99 -675.20 -2.02 -31.96 16 22 C -0.25 -13.35 8.58 84.04 0.72 -12.63 16 23 H 0.08 4.03 6.23 -2.91 -0.02 4.01 16 24 C -0.06 -3.18 4.94 84.86 0.42 -2.76 16 25 N -0.94 -57.00 11.23 21.65 0.24 -56.75 16 26 Si 0.96 44.83 29.58 68.60 2.03 46.85 16 27 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 29 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 31 H 0.04 1.54 7.67 -2.39 -0.02 1.52 16 32 H 0.06 1.91 7.40 -2.39 -0.02 1.90 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.42 7.90 8.60 -92.71 -0.80 7.10 16 36 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.05 3.08 6.15 -2.38 -0.01 3.06 16 43 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -71.34 348.22 0.79 -70.54 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.19 Total: 18.62 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 4.33 Total: 4.12 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.02 Total: -109.44 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.74 Total: -30.70 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.34 0.79 -70.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947635582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.453 kcal (2) G-P(sol) polarization free energy of solvation -71.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds