Wall clock time and date at job start Tue Mar 31 2020 06:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.59010 * 2 1 4 4 C 1.53195 * 109.58316 * 239.57450 * 2 1 3 5 5 C 1.53043 * 109.31069 * 185.57768 * 4 2 1 6 6 H 1.08994 * 109.46086 * 301.35412 * 5 4 2 7 7 N 1.46510 * 109.45977 * 181.38510 * 5 4 2 8 8 C 1.34774 * 120.00048 * 154.99969 * 7 5 4 9 9 O 1.21286 * 119.99547 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00166 * 179.97438 * 8 7 5 11 11 H 1.09001 * 115.50779 * 325.37607 * 10 8 7 12 12 C 1.53000 * 117.43124 * 110.64883 * 10 8 7 13 13 H 1.08996 * 119.80751 * 355.37373 * 12 10 8 14 14 C 1.54480 * 118.06321 * 198.08301 * 12 10 8 15 15 O 1.44425 * 104.80903 * 273.17568 * 14 12 10 16 16 C 1.44426 * 105.26985 * 40.51611 * 15 14 12 17 17 C 1.52993 * 117.43577 * 179.97438 * 10 8 7 18 18 H 1.09004 * 119.80831 * 5.65675 * 17 10 8 19 19 C 1.53041 * 109.53777 * 61.36519 * 5 4 2 20 20 C 1.53189 * 109.31378 * 298.63246 * 19 5 4 21 21 N 1.46923 * 109.58989 * 120.28549 * 2 1 3 22 22 C 1.36937 * 120.62618 * 353.11804 * 21 2 1 23 23 H 1.07999 * 120.00266 * 29.07658 * 22 21 2 24 24 C 1.38813 * 119.99719 * 209.06852 * 22 21 2 25 25 N 1.31618 * 120.00339 * 15.12971 * 24 22 21 26 26 Si 1.86809 * 119.99848 * 195.12746 * 24 22 21 27 27 H 1.48503 * 109.46962 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47086 * 120.00341 * 26 24 22 29 29 H 1.48501 * 109.46696 * 240.00214 * 26 24 22 30 30 H 1.09004 * 109.46833 * 299.71642 * 1 2 3 31 31 H 1.08998 * 109.47283 * 59.71549 * 1 2 3 32 32 H 1.08998 * 109.47129 * 179.71732 * 1 2 3 33 33 H 1.09003 * 109.49746 * 305.52460 * 4 2 1 34 34 H 1.09001 * 109.50170 * 65.62524 * 4 2 1 35 35 H 0.96996 * 119.99894 * 334.99914 * 7 5 4 36 36 H 1.08999 * 110.36787 * 154.34407 * 14 12 10 37 37 H 1.09004 * 110.46639 * 32.05969 * 14 12 10 38 38 H 1.09010 * 110.37166 * 200.65824 * 16 15 14 39 39 H 1.08993 * 110.46911 * 78.36809 * 16 15 14 40 40 H 1.09001 * 109.49808 * 58.58941 * 19 5 4 41 41 H 1.09010 * 109.49658 * 178.68184 * 19 5 4 42 42 H 1.09004 * 109.58887 * 294.84893 * 20 19 5 43 43 H 1.09000 * 109.58651 * 174.42372 * 20 19 5 44 44 H 0.96995 * 120.00537 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7309 -1.2446 5 6 3.5674 -0.8495 -1.1692 6 1 4.0060 0.1459 -1.0994 7 7 4.0651 -1.5188 -2.3737 8 6 5.3293 -1.3057 -2.7894 9 8 6.0551 -0.5602 -2.1660 10 6 5.8414 -1.9946 -4.0280 11 1 5.4578 -3.0006 -4.1982 12 6 6.1081 -1.1255 -5.2586 13 1 5.8552 -0.0655 -5.2385 14 6 6.2159 -1.8241 -6.6322 15 8 7.6019 -2.2158 -6.7394 16 6 7.9649 -2.6934 -5.4257 17 6 7.2851 -1.7101 -4.4469 18 1 7.9263 -1.1054 -3.8055 19 6 3.9568 -1.6657 0.0654 20 6 3.4651 -0.9454 1.3248 21 7 2.0226 -0.6981 1.1953 22 6 1.1543 -1.1054 2.1727 23 1 0.1353 -1.3575 1.9190 24 6 1.5840 -1.1944 3.4897 25 7 2.7088 -0.6168 3.8554 26 14 0.5659 -2.1338 4.7429 27 1 -0.6445 -2.6861 4.0833 28 1 1.3745 -3.2459 5.3039 29 1 0.1589 -1.2166 5.8375 30 1 -0.3633 0.5094 0.8926 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6029 -1.7270 -1.2892 34 1 1.7659 -0.1695 -2.1367 35 1 3.4847 -2.1152 -2.8719 36 1 5.9545 -1.1311 -7.4319 37 1 5.5700 -2.7016 -6.6652 38 1 9.0473 -2.6682 -5.2984 39 1 7.5889 -3.7046 -5.2704 40 1 3.4982 -2.6529 0.0084 41 1 5.0412 -1.7695 0.1057 42 1 3.9904 0.0038 1.4316 43 1 3.6519 -1.5691 2.1990 44 1 3.0089 -0.6787 4.7757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947635583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:41 Heat of formation + Delta-G solvation = -30.706158 kcal Electronic energy + Delta-G solvation = -24094.174175 eV Core-core repulsion = 20626.949306 eV Total energy + Delta-G solvation = -3467.224869 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92097 -39.29006 -37.63601 -34.90065 -34.50963 -32.43341 -31.34763 -29.59504 -29.06155 -26.70369 -26.17513 -24.72265 -22.80664 -21.85728 -20.99077 -20.65592 -20.07916 -19.22358 -17.70818 -16.41077 -16.20689 -16.00142 -15.59564 -15.42644 -15.05327 -14.53870 -14.09306 -13.91128 -13.64222 -13.37725 -13.18759 -13.01470 -12.82268 -12.64877 -12.08501 -11.85996 -11.62362 -11.24716 -11.12816 -10.94773 -10.93002 -10.70027 -10.66658 -10.57837 -10.31122 -10.16153 -10.06165 -10.00609 -9.83875 -9.75270 -9.36410 -8.74856 -8.43836 -6.66162 -5.77875 -3.22047 2.37457 3.10155 3.36080 3.38260 3.44113 3.45753 3.67407 4.24962 4.26779 4.47990 4.54579 4.56804 4.79807 4.91301 5.00273 5.23474 5.31337 5.33549 5.36408 5.38774 5.43350 5.56278 5.67685 5.75028 5.83877 5.96682 6.12941 6.22792 6.29248 6.33618 6.39492 6.40297 6.48579 6.62035 6.77282 6.86400 7.00899 7.07632 7.37480 7.64426 7.70009 7.81698 8.33403 8.45882 9.21449 9.85051 10.41793 11.30654 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032582 B = 0.003092 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.167038 B = 9053.805514 C = 9488.365757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.081 0.919 7 N -0.718 5.718 8 C 0.539 3.461 9 O -0.536 6.536 10 C -0.148 4.148 11 H 0.122 0.878 12 C -0.169 4.169 13 H 0.128 0.872 14 C 0.074 3.926 15 O -0.372 6.372 16 C 0.073 3.927 17 C -0.160 4.160 18 H 0.136 0.864 19 C -0.147 4.147 20 C 0.175 3.825 21 N -0.588 5.588 22 C -0.251 4.251 23 H 0.071 0.929 24 C 0.002 3.998 25 N -0.903 5.903 26 Si 0.900 3.100 27 H -0.278 1.278 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.396 0.604 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.091 0.909 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.304 -4.055 -19.019 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.099 0.901 7 N -0.367 5.367 8 C 0.324 3.676 9 O -0.413 6.413 10 C -0.169 4.169 11 H 0.140 0.860 12 C -0.188 4.188 13 H 0.145 0.855 14 C -0.002 4.002 15 O -0.291 6.291 16 C -0.004 4.004 17 C -0.179 4.179 18 H 0.154 0.846 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.312 5.312 22 C -0.380 4.380 23 H 0.089 0.911 24 C -0.197 4.197 25 N -0.547 5.547 26 Si 0.731 3.269 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.218 1.218 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.229 0.771 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.109 0.891 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.017 -3.488 -18.579 19.558 hybrid contribution -0.884 -0.786 0.787 1.421 sum 4.132 -4.274 -17.792 18.759 Atomic orbital electron populations 1.21795 0.95747 1.01389 1.00378 1.20357 0.93093 0.93558 0.86662 0.95589 1.22375 0.93601 1.01660 0.99667 1.21081 0.94302 0.96724 0.83178 0.90109 1.46247 1.12829 1.48500 1.29111 1.19415 0.82175 0.81448 0.84558 1.90725 1.56291 1.37355 1.56934 1.22448 0.99359 1.00758 0.94326 0.86011 1.24171 1.03930 1.00364 0.90327 0.85452 1.22937 0.83678 0.98431 0.95166 1.89193 1.26309 1.83544 1.30069 1.22971 1.00782 0.95790 0.80844 1.24178 0.89806 1.02256 1.01684 0.84643 1.22575 0.99723 0.99595 0.96793 1.20761 0.83185 0.97321 0.93912 1.44198 1.03053 1.65073 1.18836 1.19220 0.94729 1.37883 0.86184 0.91136 1.25105 0.97812 0.99768 0.97011 1.70022 1.23200 1.44588 1.16894 0.86254 0.79622 0.79509 0.81561 1.20289 1.21642 1.21761 0.91824 0.94298 0.92781 0.91768 0.92690 0.77070 0.88127 0.91650 0.88033 0.91697 0.92661 0.92912 0.96205 0.89103 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.94 37.16 0.30 -2.15 16 2 C 0.17 3.43 3.50 -67.60 -0.24 3.19 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.17 4.84 -26.61 -0.13 -2.30 16 5 C 0.15 2.57 2.42 -67.88 -0.16 2.41 16 6 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 7 N -0.72 -9.73 5.08 -53.76 -0.27 -10.01 16 8 C 0.54 7.72 7.57 -10.99 -0.08 7.64 16 9 O -0.54 -10.01 16.01 5.55 0.09 -9.92 16 10 C -0.15 -1.52 5.73 -91.78 -0.53 -2.04 16 11 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 12 C -0.17 -1.58 6.91 -89.08 -0.62 -2.19 16 13 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.07 0.59 7.44 37.93 0.28 0.87 16 15 O -0.37 -3.74 11.65 -35.23 -0.41 -4.15 16 16 C 0.07 0.62 7.44 37.94 0.28 0.90 16 17 C -0.16 -1.64 6.65 -89.07 -0.59 -2.23 16 18 H 0.14 1.58 7.82 -51.93 -0.41 1.17 16 19 C -0.15 -2.89 5.65 -26.61 -0.15 -3.04 16 20 C 0.17 4.20 5.28 -3.71 -0.02 4.18 16 21 N -0.59 -14.28 2.99 -164.78 -0.49 -14.77 16 22 C -0.25 -6.61 8.60 -15.06 -0.13 -6.74 16 23 H 0.07 1.81 6.21 -52.49 -0.33 1.48 16 24 C 0.00 0.04 4.96 -17.43 -0.09 -0.04 16 25 N -0.90 -26.08 11.13 55.49 0.62 -25.47 16 26 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.06 1.25 7.61 -51.93 -0.40 0.86 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.98 7.46 -51.93 -0.39 0.59 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 4.15 8.60 -40.82 -0.35 3.80 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.06 8.14 -51.92 -0.42 0.63 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -31.53 348.18 -9.33 -40.86 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.20 Total: 3.38 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.87 Total: -1.56 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.15 Total: -50.24 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.32 Total: -14.07 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.53 -9.33 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947635583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.150 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds