Wall clock time and date at job start Tue Mar 31 2020 06:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.59010 * 2 1 4 4 C 1.53195 * 109.58316 * 239.57450 * 2 1 3 5 5 C 1.53043 * 109.31069 * 185.57768 * 4 2 1 6 6 H 1.08994 * 109.46086 * 301.35412 * 5 4 2 7 7 N 1.46510 * 109.45977 * 181.38510 * 5 4 2 8 8 C 1.34774 * 120.00048 * 154.99969 * 7 5 4 9 9 O 1.21286 * 119.99547 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00166 * 179.97438 * 8 7 5 11 11 H 1.09001 * 115.50779 * 325.37607 * 10 8 7 12 12 C 1.53000 * 117.43124 * 110.64883 * 10 8 7 13 13 H 1.08996 * 119.80751 * 355.37373 * 12 10 8 14 14 C 1.54480 * 118.06321 * 198.08301 * 12 10 8 15 15 O 1.44425 * 104.80903 * 273.17568 * 14 12 10 16 16 C 1.44426 * 105.26985 * 40.51611 * 15 14 12 17 17 C 1.52993 * 117.43577 * 179.97438 * 10 8 7 18 18 H 1.09004 * 119.80831 * 5.65675 * 17 10 8 19 19 C 1.53041 * 109.53777 * 61.36519 * 5 4 2 20 20 C 1.53189 * 109.31378 * 298.63246 * 19 5 4 21 21 N 1.46923 * 109.58989 * 120.28549 * 2 1 3 22 22 C 1.36937 * 120.62618 * 353.11804 * 21 2 1 23 23 H 1.07999 * 120.00266 * 29.07658 * 22 21 2 24 24 C 1.38813 * 119.99719 * 209.06852 * 22 21 2 25 25 N 1.31618 * 120.00339 * 15.12971 * 24 22 21 26 26 Si 1.86809 * 119.99848 * 195.12746 * 24 22 21 27 27 H 1.48503 * 109.46962 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47086 * 120.00341 * 26 24 22 29 29 H 1.48501 * 109.46696 * 240.00214 * 26 24 22 30 30 H 1.09004 * 109.46833 * 299.71642 * 1 2 3 31 31 H 1.08998 * 109.47283 * 59.71549 * 1 2 3 32 32 H 1.08998 * 109.47129 * 179.71732 * 1 2 3 33 33 H 1.09003 * 109.49746 * 305.52460 * 4 2 1 34 34 H 1.09001 * 109.50170 * 65.62524 * 4 2 1 35 35 H 0.96996 * 119.99894 * 334.99914 * 7 5 4 36 36 H 1.08999 * 110.36787 * 154.34407 * 14 12 10 37 37 H 1.09004 * 110.46639 * 32.05969 * 14 12 10 38 38 H 1.09010 * 110.37166 * 200.65824 * 16 15 14 39 39 H 1.08993 * 110.46911 * 78.36809 * 16 15 14 40 40 H 1.09001 * 109.49808 * 58.58941 * 19 5 4 41 41 H 1.09010 * 109.49658 * 178.68184 * 19 5 4 42 42 H 1.09004 * 109.58887 * 294.84893 * 20 19 5 43 43 H 1.09000 * 109.58651 * 174.42372 * 20 19 5 44 44 H 0.96995 * 120.00537 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7309 -1.2446 5 6 3.5674 -0.8495 -1.1692 6 1 4.0060 0.1459 -1.0994 7 7 4.0651 -1.5188 -2.3737 8 6 5.3293 -1.3057 -2.7894 9 8 6.0551 -0.5602 -2.1660 10 6 5.8414 -1.9946 -4.0280 11 1 5.4578 -3.0006 -4.1982 12 6 6.1081 -1.1255 -5.2586 13 1 5.8552 -0.0655 -5.2385 14 6 6.2159 -1.8241 -6.6322 15 8 7.6019 -2.2158 -6.7394 16 6 7.9649 -2.6934 -5.4257 17 6 7.2851 -1.7101 -4.4469 18 1 7.9263 -1.1054 -3.8055 19 6 3.9568 -1.6657 0.0654 20 6 3.4651 -0.9454 1.3248 21 7 2.0226 -0.6981 1.1953 22 6 1.1543 -1.1054 2.1727 23 1 0.1353 -1.3575 1.9190 24 6 1.5840 -1.1944 3.4897 25 7 2.7088 -0.6168 3.8554 26 14 0.5659 -2.1338 4.7429 27 1 -0.6445 -2.6861 4.0833 28 1 1.3745 -3.2459 5.3039 29 1 0.1589 -1.2166 5.8375 30 1 -0.3633 0.5094 0.8926 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6029 -1.7270 -1.2892 34 1 1.7659 -0.1695 -2.1367 35 1 3.4847 -2.1152 -2.8719 36 1 5.9545 -1.1311 -7.4319 37 1 5.5700 -2.7016 -6.6652 38 1 9.0473 -2.6682 -5.2984 39 1 7.5889 -3.7046 -5.2704 40 1 3.4982 -2.6529 0.0084 41 1 5.0412 -1.7695 0.1057 42 1 3.9904 0.0038 1.4316 43 1 3.6519 -1.5691 2.1990 44 1 3.0089 -0.6787 4.7757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947635583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:41 Heat of formation + Delta-G solvation = -52.086908 kcal Electronic energy + Delta-G solvation = -24095.101314 eV Core-core repulsion = 20626.949306 eV Total energy + Delta-G solvation = -3468.152008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79665 -40.45919 -39.14978 -36.19041 -35.55141 -34.23238 -32.97195 -31.32959 -29.68223 -28.16226 -27.33261 -26.39797 -24.04982 -23.33171 -22.02658 -21.68704 -21.40299 -20.74432 -18.77302 -18.19938 -17.36011 -17.08258 -16.79152 -16.43299 -16.08535 -15.84233 -15.65314 -15.49405 -15.12587 -14.87158 -14.56717 -14.38097 -13.99585 -13.55634 -13.34446 -12.98305 -12.85698 -12.74577 -12.68896 -12.63421 -12.54404 -12.37244 -12.06274 -11.85618 -11.73384 -11.52154 -11.45913 -11.39556 -11.27151 -10.82765 -10.64424 -10.57138 -10.04607 -8.66533 -7.84077 -5.30855 1.33252 1.46627 1.48610 1.58621 2.02034 2.50558 2.52374 3.04793 3.31623 3.41835 3.50885 3.58729 3.75098 3.86080 3.87445 4.04227 4.10179 4.13165 4.25544 4.37709 4.41565 4.59993 4.67247 4.71434 4.74683 4.76849 4.81988 4.82826 4.94761 4.98345 5.05262 5.05823 5.09373 5.15167 5.37787 5.47131 5.54831 5.55241 5.70306 5.72721 5.72825 6.42499 6.55995 7.16385 7.23741 7.88219 8.40852 9.23380 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032582 B = 0.003092 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.167038 B = 9053.805514 C = 9488.365757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.009 0.991 4 C -0.116 4.116 5 C 0.161 3.839 6 H 0.052 0.948 7 N -0.702 5.702 8 C 0.535 3.465 9 O -0.587 6.587 10 C -0.140 4.140 11 H 0.156 0.844 12 C -0.159 4.159 13 H 0.120 0.880 14 C 0.076 3.924 15 O -0.392 6.392 16 C 0.077 3.923 17 C -0.175 4.175 18 H 0.112 0.888 19 C -0.130 4.130 20 C 0.183 3.817 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.082 0.918 24 C -0.059 4.059 25 N -0.942 5.942 26 Si 0.964 3.036 27 H -0.260 1.260 28 H -0.295 1.295 29 H -0.297 1.297 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.417 0.583 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.042 0.958 42 H -0.016 1.016 43 H 0.056 0.944 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 -5.855 -22.155 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.027 0.973 4 C -0.156 4.156 5 C 0.056 3.944 6 H 0.071 0.929 7 N -0.352 5.352 8 C 0.322 3.678 9 O -0.467 6.467 10 C -0.161 4.161 11 H 0.173 0.827 12 C -0.178 4.178 13 H 0.138 0.862 14 C 0.000 4.000 15 O -0.311 6.311 16 C 0.001 3.999 17 C -0.194 4.194 18 H 0.130 0.870 19 C -0.170 4.170 20 C 0.056 3.944 21 N -0.327 5.327 22 C -0.377 4.377 23 H 0.100 0.900 24 C -0.253 4.253 25 N -0.590 5.590 26 Si 0.793 3.207 27 H -0.184 1.184 28 H -0.222 1.222 29 H -0.224 1.224 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.254 0.746 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.002 0.998 43 H 0.074 0.926 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.232 -5.315 -21.781 22.652 hybrid contribution -0.315 -0.127 1.733 1.766 sum 2.917 -5.442 -20.048 20.978 Atomic orbital electron populations 1.21713 0.93759 1.01785 1.01168 1.20655 0.94815 0.92811 0.86546 0.97342 1.22173 0.92225 1.02385 0.98787 1.20670 0.95122 0.95053 0.83506 0.92935 1.45938 1.13095 1.48366 1.27841 1.20138 0.81690 0.80645 0.85290 1.90716 1.57575 1.39636 1.58796 1.22372 0.99288 1.01892 0.92536 0.82660 1.24239 1.02546 1.00058 0.90950 0.86237 1.23108 0.83098 0.99534 0.94217 1.89179 1.27553 1.83780 1.30586 1.23035 1.01236 0.95951 0.79669 1.24189 0.89899 1.03195 1.02150 0.87031 1.22307 0.98904 0.99705 0.96118 1.20453 0.83679 0.95364 0.94897 1.44464 1.02640 1.65777 1.19868 1.19614 0.95254 1.36259 0.86573 0.90018 1.25891 0.99077 1.01272 0.99097 1.70203 1.25246 1.46755 1.16749 0.85239 0.78617 0.77792 0.79034 1.18411 1.22198 1.22421 0.94201 0.90375 0.92485 0.90327 0.89150 0.74561 0.86669 0.89394 0.87337 0.89802 0.91758 0.93911 0.99761 0.92551 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 7.94 71.98 0.57 -3.70 16 2 C 0.16 6.18 3.50 44.97 0.16 6.34 16 3 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 4 C -0.12 -3.46 4.84 30.67 0.15 -3.31 16 5 C 0.16 5.37 2.42 45.02 0.11 5.48 16 6 H 0.05 2.08 7.58 -2.39 -0.02 2.07 16 7 N -0.70 -17.39 5.08 -442.39 -2.25 -19.64 16 8 C 0.54 14.68 7.57 87.66 0.66 15.35 16 9 O -0.59 -22.38 16.01 -3.05 -0.05 -22.43 16 10 C -0.14 -2.52 5.73 -11.54 -0.07 -2.59 16 11 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 12 C -0.16 -2.60 6.91 -9.79 -0.07 -2.67 16 13 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 14 C 0.08 0.94 7.44 72.49 0.54 1.48 16 15 O -0.39 -6.80 11.65 -148.98 -1.74 -8.54 16 16 C 0.08 1.13 7.44 72.49 0.54 1.67 16 17 C -0.18 -3.36 6.65 -9.79 -0.07 -3.42 16 18 H 0.11 2.68 7.82 -2.38 -0.02 2.66 16 19 C -0.13 -5.19 5.65 30.67 0.17 -5.02 16 20 C 0.18 9.22 5.28 86.36 0.46 9.68 16 21 N -0.60 -29.68 2.99 -675.23 -2.02 -31.70 16 22 C -0.25 -13.08 8.60 84.03 0.72 -12.36 16 23 H 0.08 4.09 6.21 -2.91 -0.02 4.07 16 24 C -0.06 -3.29 4.96 84.86 0.42 -2.87 16 25 N -0.94 -56.97 11.13 21.65 0.24 -56.73 16 26 Si 0.96 44.71 29.58 68.60 2.03 46.74 16 27 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 30 H 0.04 1.51 7.61 -2.39 -0.02 1.49 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.88 7.46 -2.39 -0.02 1.87 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.42 7.01 8.60 -92.71 -0.80 6.21 16 36 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 42 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 43 H 0.06 3.22 6.06 -2.39 -0.01 3.20 16 44 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -72.62 348.18 0.72 -71.90 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.19 Total: 16.34 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 4.30 Total: 4.05 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -4.03 Total: -108.07 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.78 Total: -30.97 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -72.62 0.72 -71.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947635583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.816 kcal (2) G-P(sol) polarization free energy of solvation -72.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds